diff options
Diffstat (limited to 'sci-biology/t-coffee/t-coffee-11.00-r2.ebuild')
-rw-r--r-- | sci-biology/t-coffee/t-coffee-11.00-r2.ebuild | 54 |
1 files changed, 54 insertions, 0 deletions
diff --git a/sci-biology/t-coffee/t-coffee-11.00-r2.ebuild b/sci-biology/t-coffee/t-coffee-11.00-r2.ebuild new file mode 100644 index 000000000000..df1859afb208 --- /dev/null +++ b/sci-biology/t-coffee/t-coffee-11.00-r2.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs + +MY_HASH="4466924" +MY_PV="${PV}.${MY_HASH}" +MY_P="${PN^^}_distribution_Version_${MY_PV}" + +DESCRIPTION="A multiple sequence alignment package" +HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html" +SRC_URI="http://www.tcoffee.org/Packages/Beta/Latest/${MY_P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND=" + sci-biology/clustalw + sci-chemistry/tm-align" +DEPEND="" + +S="${WORKDIR}/${MY_P}" +PATCHES=( + "${FILESDIR}"/${P}-mayhem.patch + "${FILESDIR}"/${P}-set_proper_dir_permissions.patch + "${FILESDIR}"/${P}-cxx11.patch + "${FILESDIR}"/${P}-gcc7.patch +) + +src_prepare() { + default + sed \ + -e '/@/s:.*;:\t:g' \ + -e '/Linking/s:$(CC):$(CC) $(CFLAGS) $(LDFLAGS):g' \ + -i t_coffee_source/makefile || die +} + +src_compile() { + emake \ + V=1 \ + CC="$(tc-getCXX)" \ + CFLAGS="${CXXFLAGS} -Wno-write-strings -Wno-unused-result" \ + -C t_coffee_source t_coffee +} + +src_install() { + dobin t_coffee_source/t_coffee + + insinto /usr/share/${PN} + doins -r example +} |