From b49088575eb777ced2551f484da86317332d6087 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Sat, 24 Jul 2021 02:11:45 +0100
Subject: gentoo resync : 24.07.2021
---
dev-lang/R/Manifest | 4 +-
dev-lang/R/R-4.0.5-r1.ebuild | 2 +-
dev-lang/R/R-4.1.0-r1.ebuild | 235 -------------------------------------------
dev-lang/R/R-4.1.0-r2.ebuild | 235 +++++++++++++++++++++++++++++++++++++++++++
4 files changed, 238 insertions(+), 238 deletions(-)
delete mode 100644 dev-lang/R/R-4.1.0-r1.ebuild
create mode 100644 dev-lang/R/R-4.1.0-r2.ebuild
(limited to 'dev-lang/R')
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index a0f7f4011fec..dc08c951cc0c 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -7,6 +7,6 @@ DIST R-4.0.5.tar.gz 32466444 BLAKE2B 5dbbd289f4fd6347b4109eecaf65b50b5793a83eddd
DIST R-4.1.0.tar.gz 33714683 BLAKE2B 22ba966b5a29f153f3ce6cbc467e815c397e7c6aade0db62c7d2ae044056d9227da4dcb8fbf33e661548f4f434c328415e297c6b07b3932ef3f47358c2543f42 SHA512 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
EBUILD R-4.0.4.ebuild 7311 BLAKE2B 63fc04096321ca5d5e3c947816ad02bf1b1fee47ea9e4500006ebc356dbf4aa70aca631497988ac33fb5a1e8ab2999a23f6b1d4519206a73993cefb79d2f9884 SHA512 6bcae68392035fcb25cf55e5e0dda41ad746ab5dcd1868477da801d8d7af82b0e3d0b52fa2d82009b43ea892bd9cf2c5b57c62aca4a7ee36a431e6f55b4cdf44
-EBUILD R-4.0.5-r1.ebuild 7315 BLAKE2B 0eca2b7badbd113c8acfcc8b76dd5fa505b93f8e7db26c54738b1d7454866567ad7c4e999ed7cb31f512501fbc4de5e2bb81f630a7aea3af200799ae7a99a3d0 SHA512 f1c78cbda7bce8ab0b32f7f01c4050e83c0b9da268b66bb86638fe6e5ccfa67b6409c8debdb6106a29b8fdfc43268ec602f7b865e134b72fb4bb2371ace26762
-EBUILD R-4.1.0-r1.ebuild 7080 BLAKE2B 312412a327e25891d3b4236f648d4958b0d7ffcada36add367baeced3f325af645cb21c5126190643bfd92eba34d169c14a68e2cdfdc3b9c98de7e7254171e3b SHA512 978cf3808415dbcea5fcbf81a3e9877e236317bb89a821b2f812f0673631fee2e4be63a66c9b26ced3f85ef429ddca4482624e7e8d87b9c9172e87707d7325c8
+EBUILD R-4.0.5-r1.ebuild 7314 BLAKE2B 8b5d585e08797e7990b1e4fb4cb26e111b6e264798a62c06ba826524258e6f76e8c80b16d6a807b7e0b1fc04c04e41965fcf3ac16766364b3066e6220a62c577 SHA512 6280b8f1482fc997b9a4719056a9e404c2114c48d2488c422fa0eedc94ceb0d1b3fd126eb9927ebf4066b49d5bfe32f2ac3098395c4d0afde0bd5e6e68cad805
+EBUILD R-4.1.0-r2.ebuild 7080 BLAKE2B 312412a327e25891d3b4236f648d4958b0d7ffcada36add367baeced3f325af645cb21c5126190643bfd92eba34d169c14a68e2cdfdc3b9c98de7e7254171e3b SHA512 978cf3808415dbcea5fcbf81a3e9877e236317bb89a821b2f812f0673631fee2e4be63a66c9b26ced3f85ef429ddca4482624e7e8d87b9c9172e87707d7325c8
MISC metadata.xml 1260 BLAKE2B eb0399a7ff9cb5c8a2f26944065ea176fb379bfd509fe2f6115dc0deb625d0c92a6cf62736572024f9c1342865cbd8a6ed43f8c427939a08ded55dd73f5514df SHA512 71c20b8afc3a72627e89bf032db5c19369738bfe35fc6d3a2550f21bf70be1eec1a697ec13690f48a1f2604cd3973140311af6b745719fd724dea595b964e6ae
diff --git a/dev-lang/R/R-4.0.5-r1.ebuild b/dev-lang/R/R-4.0.5-r1.ebuild
index 330656c3f483..e8bfafd7f0a7 100644
--- a/dev-lang/R/R-4.0.5-r1.ebuild
+++ b/dev-lang/R/R-4.0.5-r1.ebuild
@@ -16,7 +16,7 @@ SRC_URI="
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
-KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc ~x86 ~amd64-linux ~x86-linux"
+KEYWORDS="amd64 ~arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
# One test required profiling in v4.0.2, check the upstream bug:
diff --git a/dev-lang/R/R-4.1.0-r1.ebuild b/dev-lang/R/R-4.1.0-r1.ebuild
deleted file mode 100644
index ebf4b5c27c2e..000000000000
--- a/dev-lang/R/R-4.1.0-r1.ebuild
+++ /dev/null
@@ -1,235 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
-
-REQUIRED_USE="png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )
-"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-BDEPEND="virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-DEPEND="
- app-arch/bzip2:0=
- app-arch/xz-utils:0=
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- net-libs/libtirpc
- net-misc/curl
- virtual/blas:0
- || ( sys-apps/coreutils app-misc/realpath )
- cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
- icu? ( dev-libs/icu:= )
- jpeg? ( virtual/jpeg:0 )
- lapack? ( virtual/lapack:0 )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:0= )
- readline? ( sys-libs/readline:0= )
- tiff? ( media-libs/tiff:0= )
- tk? ( dev-lang/tk:0= )
- X? ( x11-libs/libXmu:0= x11-libs/libXt x11-misc/xdg-utils )"
-
-RDEPEND="${DEPEND}
- sys-libs/zlib:0[minizip]
- java? ( >=virtual/jre-1.8:* )"
-
-RESTRICT="minimal? ( test )
- !test? ( test )"
-
-PATCHES=(
- "${FILESDIR}"/${PN}-3.4.1-parallel.patch
- "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
- "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- FORTRAN_NEED_OPENMP=1
- fi
- fortran-2_pkg_setup
- filter-ldflags -Wl,-Bdirect -Bdirect
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack && \
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl && \
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
- # Fix for Darwin (OS X)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
- fi
- fi
- AT_M4DIR=m4
- eautoreconf
-}
-
-src_configure() {
- # --with-system-tre \
- # tre is patched from upstream
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_enable static-libs static) \
- $(use_enable static-libs R-static-lib) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}/fonts"
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone \
- shared $(use static-libs && echo static) AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- cat > 99R <<-EOF
- LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
- R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
- EOF
- doenvd 99R
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
- "${mod}"
- done
- popd > /dev/null
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x "/usr/share/doc/${PF}/${f}"
- done
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-4.1.0-r2.ebuild b/dev-lang/R/R-4.1.0-r2.ebuild
new file mode 100644
index 000000000000..ebf4b5c27c2e
--- /dev/null
+++ b/dev-lang/R/R-4.1.0-r2.ebuild
@@ -0,0 +1,235 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
+
+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
+
+DESCRIPTION="Language and environment for statistical computing and graphics"
+HOMEPAGE="https://www.r-project.org/"
+SRC_URI="
+ mirror://cran/src/base/R-4/${P}.tar.gz
+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
+
+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~sparc ~x86 ~amd64-linux ~x86-linux"
+IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline static-libs test tiff tk X"
+
+REQUIRED_USE="png? ( || ( cairo X ) )
+ jpeg? ( || ( cairo X ) )
+ tiff? ( || ( cairo X ) )
+"
+
+# At least one package installation in the test suite requires TeX,
+# and will fail without it (bug #718056).
+BDEPEND="virtual/pkgconfig
+ doc? (
+ virtual/latex-base
+ dev-texlive/texlive-fontsrecommended
+ )
+ test? ( virtual/latex-base )"
+DEPEND="
+ app-arch/bzip2:0=
+ app-arch/xz-utils:0=
+ app-text/ghostscript-gpl
+ dev-libs/libpcre2:=
+ net-libs/libtirpc
+ net-misc/curl
+ virtual/blas:0
+ || ( sys-apps/coreutils app-misc/realpath )
+ cairo? ( x11-libs/cairo:0=[X=] x11-libs/pango:0= )
+ icu? ( dev-libs/icu:= )
+ jpeg? ( virtual/jpeg:0 )
+ lapack? ( virtual/lapack:0 )
+ perl? ( dev-lang/perl )
+ png? ( media-libs/libpng:0= )
+ readline? ( sys-libs/readline:0= )
+ tiff? ( media-libs/tiff:0= )
+ tk? ( dev-lang/tk:0= )
+ X? ( x11-libs/libXmu:0= x11-libs/libXt x11-misc/xdg-utils )"
+
+RDEPEND="${DEPEND}
+ sys-libs/zlib:0[minizip]
+ java? ( >=virtual/jre-1.8:* )"
+
+RESTRICT="minimal? ( test )
+ !test? ( test )"
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch
+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
+ "${FILESDIR}"/${PN}-3.6.2-no-gzip-doc.patch
+)
+
+pkg_pretend() {
+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
+ FORTRAN_NEED_OPENMP=1
+ fi
+ fortran-2_pkg_setup
+ filter-ldflags -Wl,-Bdirect -Bdirect
+ # avoid using existing R installation
+ unset R_HOME
+}
+
+src_prepare() {
+ default
+
+ # fix packages.html for doc (gentoo bug #205103)
+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
+ -i src/library/tools/R/Rd.R || die
+
+ # fix Rscript path when installed (gentoo bug #221061)
+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT}/usr/$(get_libdir)/${PN}\"':" \
+ -i src/unix/Makefile.in || die "sed unix Makefile failed"
+
+ # fix HTML links to manual (gentoo bug #273957)
+ sed -e 's:\.\./manual/:manual/:g' \
+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
+
+ use lapack && \
+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
+
+ if use X; then
+ export R_BROWSER="$(type -p xdg-open)"
+ export R_PDFVIEWER="$(type -p xdg-open)"
+ fi
+ use perl && \
+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
+
+ # don't search /usr/local
+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
+ # Fix for Darwin (OS X)
+ if use prefix; then
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
+ -e "/SHLIB_EXT/s/\.so/.dylib/" \
+ -i configure.ac || die
+ # sort of "undo" 2.14.1-rmath-shared.patch
+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT}/usr/$(get_libdir)/libRmath.dylib:" \
+ -i src/nmath/standalone/Makefile.in || die
+ else
+ append-ldflags -Wl,-rpath="${EROOT}/usr/$(get_libdir)/R/lib"
+ fi
+ fi
+ AT_M4DIR=m4
+ eautoreconf
+}
+
+src_configure() {
+ # --with-system-tre \
+ # tre is patched from upstream
+ econf \
+ --enable-byte-compiled-packages \
+ --enable-R-shlib \
+ --disable-R-framework \
+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
+ $(use_enable java) \
+ $(use_enable lto lto R) \
+ $(use_enable nls) \
+ $(use_enable openmp) \
+ $(use_enable profile R-profiling) \
+ $(use_enable profile memory-profiling) \
+ $(use_enable static-libs static) \
+ $(use_enable static-libs R-static-lib) \
+ $(use_with cairo) \
+ $(use_with icu ICU) \
+ $(use_with jpeg jpeglib) \
+ $(use_with lapack) \
+ $(use_with !minimal recommended-packages) \
+ $(use_with png libpng) \
+ $(use_with readline) \
+ $(use_with tiff libtiff) \
+ $(use_with tk tcltk) \
+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \
+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \
+ $(use_with X x)
+}
+
+src_compile() {
+ export VARTEXFONTS="${T}/fonts"
+ emake AR="$(tc-getAR)"
+ emake -C src/nmath/standalone \
+ shared $(use static-libs && echo static) AR="$(tc-getAR)"
+ use doc && emake info pdf
+}
+
+src_install() {
+ default
+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
+
+ if use doc; then
+ emake DESTDIR="${D}" install-info install-pdf
+ dosym ../manual /usr/share/doc/${PF}/html/manual
+ fi
+
+ cat > 99R <<-EOF
+ LDPATH=${EROOT}/usr/$(get_libdir)/${PN}/lib
+ R_HOME=${EROOT}/usr/$(get_libdir)/${PN}
+ EOF
+ doenvd 99R
+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
+ # The buildsystem has a different understanding of install_names than
+ # we require. Since it builds modules like shared objects (wrong), many
+ # objects (all modules) get an incorrect install_name. Fixing the build
+ # system here is not really trivial.
+ if [[ ${CHOST} == *-darwin* ]] ; then
+ local mod
+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null
+ for mod in $(find . -name "*.dylib") ; do
+ mod=${mod#./}
+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \
+ "${mod}"
+ done
+ popd > /dev/null
+ fi
+
+ # Users are encouraged to access some of the the R documentation
+ # interactively, through functions like "contributors()" that
+ # tries to open the "AUTHORS" file. Other files can be accessed
+ # by name with RShowDoc(), and the documentation for e.g. license()
+ # and RShowDoc() suggests a few of these names. Here we try to
+ # collect as many names as possible that a user might actually
+ # try to view through R, because if we don't decompress them,
+ # then R doesn't know what to do with 'em. Bug #556706.
+ INTERACTIVE_DOCS=(
+ AUTHORS
+ COPYING
+ FAQ
+ NEWS
+ THANKS
+ )
+
+ # Other data sources that are shipped as "documentation," but which
+ # need to be accessible via their original unmolested filenames.
+ INTERACTIVE_DATA=(
+ BioC_mirrors.csv
+ CRAN_mirrors.csv
+ KEYWORDS.db
+ NEWS.rds
+ )
+
+ NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
+
+ for f in "${NOCOMPRESS_DOCS[@]}"; do
+ docompress -x "/usr/share/doc/${PF}/${f}"
+ done
+}
+
+pkg_postinst() {
+ if use java; then
+ einfo "Re-initializing java paths for ${P}"
+ R CMD javareconf
+ fi
+}
--
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