From 7bc9c63c9da678a7e6fceb095d56c634afd22c56 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sun, 15 Dec 2019 18:09:03 +0000 Subject: gentoo resync : 15.12.2019 --- dev-python/numpy/Manifest | 14 +- .../files/numpy-1.17.4-no-hardcode-blas.patch | 55 ++++++++ dev-python/numpy/numpy-1.14.5.ebuild | 1 + dev-python/numpy/numpy-1.15.4.ebuild | 1 + dev-python/numpy/numpy-1.16.1.ebuild | 1 + dev-python/numpy/numpy-1.17.4.ebuild | 157 +++++++++++++++++++++ dev-python/numpy/numpy-1.8.2.ebuild | 146 ------------------- 7 files changed, 221 insertions(+), 154 deletions(-) create mode 100644 dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch create mode 100644 dev-python/numpy/numpy-1.17.4.ebuild delete mode 100644 dev-python/numpy/numpy-1.8.2.ebuild (limited to 'dev-python/numpy') diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest index ce2fad54a0ae..888578ee8d95 100644 --- a/dev-python/numpy/Manifest +++ b/dev-python/numpy/Manifest @@ -1,30 +1,28 @@ AUX 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new file mode 100644 index 000000000000..8c2a58a19401 --- /dev/null +++ b/dev-python/numpy/files/numpy-1.17.4-no-hardcode-blas.patch @@ -0,0 +1,55 @@ +diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py +index ba2b1f46c..09db18e69 100644 +--- a/numpy/distutils/system_info.py ++++ b/numpy/distutils/system_info.py +@@ -374,28 +374,7 @@ def get_info(name, notfound_action=0): + 1 - display warning message + 2 - raise error + """ +- cl = {'atlas': atlas_info, # use lapack_opt or blas_opt instead +- 'atlas_threads': atlas_threads_info, # ditto +- 'atlas_blas': atlas_blas_info, +- 'atlas_blas_threads': atlas_blas_threads_info, +- 'lapack_atlas': lapack_atlas_info, # use lapack_opt instead +- 'lapack_atlas_threads': lapack_atlas_threads_info, # ditto +- 'atlas_3_10': atlas_3_10_info, # use lapack_opt or blas_opt instead +- 'atlas_3_10_threads': atlas_3_10_threads_info, # ditto +- 'atlas_3_10_blas': atlas_3_10_blas_info, +- 'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info, +- 'lapack_atlas_3_10': lapack_atlas_3_10_info, # use lapack_opt instead +- 'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info, # ditto +- 'flame': flame_info, # use lapack_opt instead +- 'mkl': mkl_info, +- # openblas which may or may not have embedded lapack +- 'openblas': openblas_info, # use blas_opt instead +- # openblas with embedded lapack +- 'openblas_lapack': openblas_lapack_info, # use blas_opt instead +- 'openblas_clapack': openblas_clapack_info, # use blas_opt instead +- 'blis': blis_info, # use blas_opt instead +- 'lapack_mkl': lapack_mkl_info, # use lapack_opt instead +- 'blas_mkl': blas_mkl_info, # use blas_opt instead ++ cl = {'flame': flame_info, # use lapack_opt instead + 'accelerate': accelerate_info, # use blas_opt instead + 'x11': x11_info, + 'fft_opt': fft_opt_info, +@@ -796,10 +775,7 @@ class system_info(object): + return [b for b in [a.strip() for a in libs.split(',')] if b] + + def get_libraries(self, key='libraries'): +- if hasattr(self, '_lib_names'): +- return self.get_libs(key, default=self._lib_names) +- else: +- return self.get_libs(key, '') ++ return self.get_libs(key, '') + + def library_extensions(self): + c = customized_ccompiler() +@@ -1842,7 +1818,7 @@ class blas_info(system_info): + lib = self.get_cblas_libs(info) + if lib is not None: + info['language'] = 'c' +- info['libraries'] = lib ++ info['libraries'] = [lib] + info['define_macros'] = [('HAVE_CBLAS', None)] + self.set_info(**info) + diff --git a/dev-python/numpy/numpy-1.14.5.ebuild b/dev-python/numpy/numpy-1.14.5.ebuild index d6c2f8e6d8ff..55a472e0bc84 100644 --- a/dev-python/numpy/numpy-1.14.5.ebuild +++ b/dev-python/numpy/numpy-1.14.5.ebuild @@ -26,6 +26,7 @@ LICENSE="BSD" SLOT="0" KEYWORDS="alpha amd64 arm ~arm64 hppa ia64 ~mips ppc ppc64 s390 ~sh sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris" IUSE="doc lapack test" +RESTRICT="!test? ( test )" RDEPEND="lapack? ( virtual/cblas virtual/lapack )" DEPEND="${RDEPEND} diff --git a/dev-python/numpy/numpy-1.15.4.ebuild b/dev-python/numpy/numpy-1.15.4.ebuild index dc2377ac8e46..8a97cad7ac9c 100644 --- a/dev-python/numpy/numpy-1.15.4.ebuild +++ b/dev-python/numpy/numpy-1.15.4.ebuild @@ -26,6 +26,7 @@ LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris" IUSE="doc lapack test" +RESTRICT="!test? ( test )" RDEPEND="lapack? ( virtual/cblas virtual/lapack )" DEPEND="${RDEPEND} diff --git a/dev-python/numpy/numpy-1.16.1.ebuild b/dev-python/numpy/numpy-1.16.1.ebuild index 7b450c102e86..b923d3d6d813 100644 --- a/dev-python/numpy/numpy-1.16.1.ebuild +++ b/dev-python/numpy/numpy-1.16.1.ebuild @@ -26,6 +26,7 @@ LICENSE="BSD" SLOT="0" KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris" IUSE="doc lapack test" +RESTRICT="!test? ( test )" RDEPEND="lapack? ( virtual/cblas diff --git a/dev-python/numpy/numpy-1.17.4.ebuild b/dev-python/numpy/numpy-1.17.4.ebuild new file mode 100644 index 000000000000..607f5f55d31f --- /dev/null +++ b/dev-python/numpy/numpy-1.17.4.ebuild @@ -0,0 +1,157 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{5,6,7,8} ) +PYTHON_REQ_USE="threads(+)" + +FORTRAN_NEEDED=lapack + +inherit distutils-r1 flag-o-matic fortran-2 multiprocessing toolchain-funcs + +DOC_PV="1.16.4" +DESCRIPTION="Fast array and numerical python library" +HOMEPAGE="https://www.numpy.org" +SRC_URI=" + mirror://pypi/${PN:0:1}/${PN}/${P}.zip + doc? ( + https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-html.zip -> numpy-html-${DOC_PV}.zip + https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-ref.pdf -> numpy-ref-${DOC_PV}.pdf + https://numpy.org/doc/$(ver_cut 1-2 ${DOC_PV})/numpy-user.pdf -> numpy-user-${DOC_PV}.pdf + )" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris" +IUSE="doc lapack test" +RESTRICT="!test? ( test )" + +RDEPEND=" + lapack? ( + virtual/cblas + virtual/lapack + )" +DEPEND="${RDEPEND}" +BDEPEND="app-arch/unzip + dev-python/setuptools[${PYTHON_USEDEP}] + lapack? ( virtual/pkgconfig ) + test? ( + dev-python/pytest[${PYTHON_USEDEP}] + )" + +PATCHES=( + "${FILESDIR}"/${PN}-1.17.4-no-hardcode-blas.patch +) + +src_unpack() { + default + if use doc; then + unzip -qo "${DISTDIR}"/numpy-html-${DOC_PV}.zip -d html || die + fi +} + +pc_incdir() { + $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ + sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libdir() { + $(tc-getPKG_CONFIG) --libs-only-L $@ | \ + sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' +} + +pc_libs() { + $(tc-getPKG_CONFIG) --libs-only-l $@ | \ + sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ + -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ + | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' +} + +python_prepare_all() { + if use lapack; then + append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)" + local incdir="${EPREFIX}"/usr/include + local libdir="${EPREFIX}"/usr/$(get_libdir) + cat >> site.cfg <<-EOF || die + [blas] + include_dirs = $(pc_incdir cblas):${incdir} + library_dirs = $(pc_libdir cblas blas):${libdir} + blas_libs = $(pc_libs cblas blas) + [lapack] + library_dirs = $(pc_libdir lapack):${libdir} + lapack_libs = $(pc_libs lapack) + EOF + else + export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None + fi + + export CC="$(tc-getCC) ${CFLAGS}" + + append-flags -fno-strict-aliasing + + # See progress in http://projects.scipy.org/scipy/numpy/ticket/573 + # with the subtle difference that we don't want to break Darwin where + # -shared is not a valid linker argument + if [[ ${CHOST} != *-darwin* ]]; then + append-ldflags -shared + fi + + # only one fortran to link with: + # linking with cblas and lapack library will force + # autodetecting and linking to all available fortran compilers + append-fflags -fPIC + if use lapack; then + NUMPY_FCONFIG="config_fc --noopt --noarch" + # workaround bug 335908 + [[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95" + fi + + # don't version f2py, we will handle it. + sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die + + # disable fuzzed tests + find numpy/*/tests -name '*.py' -exec sed -i \ + -e 's:def \(.*_fuzz\):def _\1:' {} + || die + # very memory- and disk-hungry + sed -i -e 's:test_large_zip:_&:' numpy/lib/tests/test_io.py || die + + distutils-r1_python_prepare_all +} + +python_compile() { + export MAKEOPTS=-j1 #660754 + + local python_makeopts_jobs="" + python_is_python3 || python_makeopts_jobs="-j $(makeopts_jobs)" + distutils-r1_python_compile \ + ${python_makeopts_jobs} \ + ${NUMPY_FCONFIG} +} + +python_test() { + distutils_install_for_testing --single-version-externally-managed \ + --record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG} + + cd "${TMPDIR}" || die + + "${EPYTHON}" -c " +import numpy, sys +r = numpy.test(label='full', verbose=3) +sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}" +} + +python_install() { + distutils-r1_python_install ${NUMPY_FCONFIG} + python_optimize +} + +python_install_all() { + local DOCS=( THANKS.txt ) + + if use doc; then + local HTML_DOCS=( "${WORKDIR}"/html/. ) + DOCS+=( "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf ) + fi + + distutils-r1_python_install_all +} diff --git a/dev-python/numpy/numpy-1.8.2.ebuild b/dev-python/numpy/numpy-1.8.2.ebuild deleted file mode 100644 index aecde8252ff8..000000000000 --- a/dev-python/numpy/numpy-1.8.2.ebuild +++ /dev/null @@ -1,146 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="threads(+)" - -FORTRAN_NEEDED=lapack - -inherit distutils-r1 eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator - -DOC_PV="1.8.1" -DOC_P="${PN}-${DOC_PV}" - -DESCRIPTION="Fast array and numerical python library" -HOMEPAGE="https://www.numpy.org" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz - doc? ( - http://docs.scipy.org/doc/${DOC_P}/${PN}-html-${DOC_PV}.zip - http://docs.scipy.org/doc/${DOC_P}/${PN}-ref-${DOC_PV}.pdf - http://docs.scipy.org/doc/${DOC_P}/${PN}-user-${DOC_PV}.pdf - )" -# It appears the docs haven't been upgraded, still @ 1.8.1 -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris" -IUSE="doc lapack test" - -RDEPEND="dev-python/setuptools[${PYTHON_USEDEP}] - lapack? ( virtual/cblas virtual/lapack )" -DEPEND="${RDEPEND} - doc? ( app-arch/unzip ) - lapack? ( virtual/pkgconfig ) - test? ( dev-python/nose[${PYTHON_USEDEP}] )" - -# Uses distutils.command.config. -DISTUTILS_IN_SOURCE_BUILD=1 - -PATCHES=( - "${FILESDIR}"/${PN}-1.8.0-no-hardcode-blas.patch -) - -src_unpack() { - default - if use doc; then - unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die - fi -} - -pc_incdir() { - $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ - sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libdir() { - $(tc-getPKG_CONFIG) --libs-only-L $@ | \ - sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' -} - -pc_libs() { - $(tc-getPKG_CONFIG) --libs-only-l $@ | \ - sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ - -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ - | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' -} - -python_prepare_all() { - if use lapack; then - append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)" - local incdir="${EPREFIX}"/usr/include - local libdir="${EPREFIX}"/usr/$(get_libdir) - # make sure _dotblas.so gets built - sed -i -e '/NO_ATLAS_INFO/,+1d' numpy/core/setup.py || die - cat >> site.cfg <<-EOF - [blas] - include_dirs = $(pc_incdir cblas):${incdir} - library_dirs = $(pc_libdir cblas blas):${libdir} - blas_libs = $(pc_libs cblas blas) - [lapack] - library_dirs = $(pc_libdir lapack):${libdir} - lapack_libs = $(pc_libs lapack) - EOF - else - export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None - fi - - export CC="$(tc-getCC) ${CFLAGS}" - - append-flags -fno-strict-aliasing - - # See progress in http://projects.scipy.org/scipy/numpy/ticket/573 - # with the subtle difference that we don't want to break Darwin where - # -shared is not a valid linker argument - if [[ ${CHOST} != *-darwin* ]]; then - append-ldflags -shared - fi - - # only one fortran to link with: - # linking with cblas and lapack library will force - # autodetecting and linking to all available fortran compilers - append-fflags -fPIC - if use lapack; then - NUMPY_FCONFIG="config_fc --noopt --noarch" - # workaround bug 335908 - [[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95" - fi - - # don't version f2py, we will handle it. - sed -i -e '/f2py_exe/s:+os\.path.*$::' numpy/f2py/setup.py || die - - distutils-r1_python_prepare_all -} - -python_compile() { - distutils-r1_python_compile ${NUMPY_FCONFIG} -} - -python_test() { - distutils_install_for_testing ${NUMPY_FCONFIG} - - cd "${TMPDIR}" || die - ${EPYTHON} -c " -import numpy, sys -r = numpy.test(label='full', verbose=3) -sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}" -} - -python_install() { - distutils-r1_python_install ${NUMPY_FCONFIG} -} - -python_install_all() { - distutils-r1_python_install_all - - dodoc COMPATIBILITY DEV_README.txt THANKS.txt - - if use doc; then - dohtml -r "${WORKDIR}"/html/* - dodoc "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf - fi - - docinto f2py - dodoc numpy/f2py/docs/*.txt - doman numpy/f2py/f2py.1 -} -- cgit v1.2.3