From e52012895af4c92f008daac78c3d8b6d691a5dd1 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Mon, 26 Jun 2023 19:33:08 +0100 Subject: gentoo auto-resync : 26:06:2023 - 19:33:07 --- dev-python/numpy/Manifest | 4 +- .../files/numpy-1.25.0-fix-long-double-check.patch | 151 +++++++++++++++++ ...y-1.25.0-skip-python3.12-irrelevant-tests.patch | 187 +++++++++++++++++++++ dev-python/numpy/numpy-1.25.0.ebuild | 9 +- 4 files changed, 348 insertions(+), 3 deletions(-) create mode 100644 dev-python/numpy/files/numpy-1.25.0-fix-long-double-check.patch create mode 100644 dev-python/numpy/files/numpy-1.25.0-skip-python3.12-irrelevant-tests.patch (limited to 'dev-python/numpy') diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest index 0b939a1b35d5..7b233fd9d96e 100644 --- a/dev-python/numpy/Manifest +++ b/dev-python/numpy/Manifest @@ -1,5 +1,7 @@ AUX numpy-1.22.0-no-hardcode-blasv2.patch 2710 BLAKE2B 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ca4581f61fb1350803915bcc8e3198bd13c75e0c7e178c86e72682222cbafff396f23afad9d7427d9d2a4be625f84626c899493045a0b8cc7ee3d031d36712c3 SHA512 cce36c856beb2254436f2753ed94b7a933d1e4c06fe0a96c2be70d944f91bb13f3358f50981398d0b9169c0e01b64695c3adb797db15cb6b695488318e276886 AUX numpy-1.25.0_rc1-meson-pyproject.toml.patch 16917 BLAKE2B 6cdda647c1c4f003adcaff3d634cbaa2f6c1624f2e44bfff1b6542189693a1dc99bf8a3da38d5e9a5dd2b3a6382d0430f03eb3c39811cf3b72e85a1bbae9ea0e SHA512 0a51b1c84356704f373ba1188dc63152e45fdb7bc71881e8ab08b67bfbf2e8f1e9b5544eedf6e3d8b4b872e294e28233e9f059dfdad42ff835bba22ee66d0d93 DIST numpy-1.24.0.tar.gz 10897101 BLAKE2B 59e2b913f90de76589d8fbb2f07e2d389012c7f6ce9bd641bc4837776465ce9c41c34f19f92bee55d4bae6245c1d2c84315b359ef0b089fd68d31cd7e7ec44b1 SHA512 3b4e6255b8d39e8504a50ecd3c2ba09d5b16d3f6c70b23b67e4dbf03d1fe390c55030f46090341d39a1ee8228c61ad6212fdc6e4579fcec9e26b4dbe70268661 DIST numpy-1.24.2.tar.gz 10906862 BLAKE2B e48f65eab709f0c57ec378d813a7b65bcaca6d5960b559d6db1c60726e5cf12517f4b2e1636b0ff815a2109925edccba200270db5170fd0aff5fd635919165ac SHA512 145fd7fb3919a185f75076d51b92c54a7fb1b776b637752ca15fdee15b239d6a517ef1bb8cded7c92e059cf6cda0146c24943c042d19b791e81125bc0ad4b820 @@ -9,5 +11,5 @@ EBUILD numpy-1.24.0.ebuild 4196 BLAKE2B a7359b00b007339381f458502457b2d2f9f07daf EBUILD numpy-1.24.2.ebuild 4366 BLAKE2B a596f2a7404747dacfe7ce08be400836ca89a39c7c63137bc4b1f089d71b5bc1dae6cdf6e8226ebd871665f2ea1058d55836fba3222d8cf316be749974881be4 SHA512 7842c22c4e2b321627f7b8ca0eb8ee3a8717ef42f25327df606188355e323ceb2a825b08faff5fbc9e2dcc8e8f9b6cde6e0d63bf24e41b1a9e41209322fa6aa5 EBUILD numpy-1.24.3-r1.ebuild 4631 BLAKE2B 89d426ee6284e84f8603c9fdd4e1adc6ab97be8e2504c67ec3545a95fc47d03024602816a1198fbfc6771d256d2fbc23e181307370d5acce144b0417c5c2391f SHA512 c5e33896690a50f83d14f7544920f4755ca0d927982dd9271da400a23cfb3226abe779fe117e15b3776e31c8fc96751955ec55ce69e46ab58a3e2874a94f6f8d EBUILD numpy-1.24.3.ebuild 4581 BLAKE2B 0ab41b83e18c8395c19885f292a186407f62c584a94ff2eeeaf2e72847b1973581b9eab51b351898171ad51610d7eea6b9d3545f4a771c143f752e6790924345 SHA512 cc1204442685b83ca2f9103f52fe8f338729e62eae4299a511bad54b71c99a77bbb50d22b77f08b8ddf1924340211360d17e0886f20ac55572a130e941250b80 -EBUILD numpy-1.25.0.ebuild 2793 BLAKE2B af7a6b2015cdfd41d196615ff1f5ee1e563932f5eb928983cea0a85f35a43c2564dec50e6302eae286b46abc14aa8920e3bfa1445b69009147634a7b9d69958a SHA512 01a0935c5a3097e49f67e0aa6375e50d78332e7ba5316faa83e5421b07dc2af868266329fcc629ca1c83ae1bcd47b48a30c9f089472e9157bf1f73604f9600df +EBUILD numpy-1.25.0.ebuild 3159 BLAKE2B 4922ee982a5fe23a28d832bb634b55bdce81be2e20d459a70002f53bd16020ceb688ca66879ae74646d21451bb92cd4058242429f6f086403d56aa6f89eea69a SHA512 3efd47da84609257837bebc9854f932ea85ce2c9ada614af5da551bb87b88b5dd58f0f9370b98afa2f128a1b5537de37782c766be6011b34796597b30aa0b83c MISC metadata.xml 932 BLAKE2B 7a4af31f613bab05ff542da48bf6ff1484d9df2459f559516e71329451dd739d3df0fead507c8033d94ab9ed516b68efe7f21819a8cd6ca303643d8c8bc34e86 SHA512 32cb8c1ab61521a02cbec38f6ea383f074e50d46aa3462ddcb85710f9d348e8e628cf2a5725e3cd921cc32f02885a1b5f02125639f0ec885384eeeff7f468a06 diff --git a/dev-python/numpy/files/numpy-1.25.0-fix-long-double-check.patch b/dev-python/numpy/files/numpy-1.25.0-fix-long-double-check.patch new file mode 100644 index 000000000000..4f3ef21c93b3 --- /dev/null +++ b/dev-python/numpy/files/numpy-1.25.0-fix-long-double-check.patch @@ -0,0 +1,151 @@ +https://github.com/numpy/numpy/commit/de0b2d5c6dee9303c4a055e7591978ed5a06e403 + +From de0b2d5c6dee9303c4a055e7591978ed5a06e403 Mon Sep 17 00:00:00 2001 +From: matoro +Date: Sun, 18 Jun 2023 19:39:06 -0400 +Subject: [PATCH] BLD: Port long double identification to C for meson + +This ports the old Python code for identifying the long double +representation to C, so that it can be easily invoked by meson. The +original implementation is at https://github.com/numpy/numpy/blob/eead09a3d02c09374942cdc787c0b5e4fe9e7472/numpy/core/setup_common.py#L264-L434 + +The C portion of the code has been tested and confirmed to work on +systems with the following formats, either natively or via an +alternative ABI: INTEL_EXTENDED_16_BYTES_LE, IEEE_QUAD_BE, +IEEE_QUAD_LE, IBM_DOUBLE_DOUBLE_BE, IBM_DOUBLE_DOUBLE_LE, +IEEE_DOUBLE_BE, INTEL_EXTENDED_12_BYTES_LE. + +The original meson port includes an error condition with the comment +"This should not be possible, 12 bits of "content" should still result +in sizeof() being 16." As far as I can tell this is incorrect, as +compiling on an x86_64 system with 32-bit ABI (gcc -m32) does indeed +have sizeof(long double)==12. This is reflected in the C code. + +Closes gh-23972, closes +https://github.com/mesonbuild/meson/issues/11068. +--- + numpy/core/meson.build | 110 ++++++++++++++++++++++++++++++++--------- + 1 file changed, 87 insertions(+), 23 deletions(-) + +diff --git a/numpy/core/meson.build b/numpy/core/meson.build +index 3427de408f1..92b393e4bc1 100644 +--- a/numpy/core/meson.build ++++ b/numpy/core/meson.build +@@ -361,29 +361,93 @@ foreach intrin: optional_intrinsics + endif + endforeach + +-# long double representation detection (see setup_common.py) +-# TODO: this is still incomplete, and different from how it's done in the +-# numpy.distutils based build, see https://github.com/mesonbuild/meson/issues/11068 +-longdouble_size = cc.sizeof('long double') +-if longdouble_size == 8 +- if host_machine.endian() == 'little' +- longdouble_format = 'IEEE_DOUBLE_LE' +- else +- longdouble_format = 'IEEE_DOUBLE_BE' +- endif +-elif longdouble_size == 12 +- error('This should not be possible, 12 bits of "content" should still result in sizeof() being 16. Please report this error!' +- ) +-elif longdouble_size == 16 +- if host_machine.endian() == 'little' +- # FIXME: this varies, there's multiple formats here! Not yet implemented. +- # TBD how we deal with the mess of old long double formats. +- longdouble_format = 'INTEL_EXTENDED_16_BYTES_LE' +- else +- error('No idea what this is ....') +- endif +-else +- error('Unknown long double size: ' + londouble_size) ++# This is a port of the old python code for identifying the long double ++# representation to C. The old Python code is in this range: ++# https://github.com/numpy/numpy/blob/eead09a3d02c09374942cdc787c0b5e4fe9e7472/numpy/core/setup_common.py#L264-L434 ++# This port is in service of solving gh-23972 ++# as well as https://github.com/mesonbuild/meson/issues/11068 ++longdouble_format = meson.get_compiler('c').run( ++''' ++#include ++#include ++ ++#define repcmp(z) (memcmp((const char *)&foo.x, z, sizeof(foo.x)) == 0) ++ ++const struct { ++ char before[16]; ++ long double x; ++ char after[8]; ++} foo = {{'\0'}, -123456789.0, {'\0'}}; ++ ++int main(void) { ++ switch (sizeof(foo.x)) { ++ case 8: { ++ if (repcmp( ++ ((const char[]){0000, 0000, 0000, 0124, 0064, 0157, 0235, 0301}))) { ++ fprintf(stdout, "IEEE_DOUBLE_LE"); ++ return 0; ++ } ++ if (repcmp( ++ ((const char[]){0301, 0235, 0157, 0064, 0124, 0000, 0000, 0000}))) { ++ fprintf(stdout, "IEEE_DOUBLE_BE"); ++ return 0; ++ } ++ fprintf(stdout, "UNKNOWN"); ++ return 1; ++ } ++ case 12: { ++ if (repcmp(((const char[]){0000, 0000, 0000, 0000, 0240, 0242, 0171, 0353, ++ 0031, 0300, 0000, 0000}))) { ++ fprintf(stdout, "INTEL_EXTENDED_12_BYTES_LE"); ++ return 0; ++ } ++ if (repcmp(((const char[]){0300, 0031, 0000, 0000, 0353, 0171, 0242, 0240, ++ 0000, 0000, 0000, 0000}))) { ++ fprintf(stdout, "MOTOROLA_EXTENDED_12_BYTES_BE"); ++ return 0; ++ } ++ fprintf(stdout, "UNKNOWN"); ++ return 1; ++ } ++ case 16: { ++ if (repcmp( ++ ((const char[]){0000, 0000, 0000, 0000, 0240, 0242, 0171, 0353, ++ 0031, 0300, 0000, 0000, 0000, 0000, 0000, 0000}))) { ++ fprintf(stdout, "INTEL_EXTENDED_16_BYTES_LE"); ++ return 0; ++ } ++ if (repcmp( ++ ((const char[]){0300, 0031, 0326, 0363, 0105, 0100, 0000, 0000, ++ 0000, 0000, 0000, 0000, 0000, 0000, 0000, 0000}))) { ++ fprintf(stdout, "IEEE_QUAD_BE"); ++ return 0; ++ } ++ if (repcmp( ++ ((const char[]){0000, 0000, 0000, 0000, 0000, 0000, 0000, 0000, ++ 0000, 0000, 0100, 0105, 0363, 0326, 0031, 0300}))) { ++ fprintf(stdout, "IEEE_QUAD_LE"); ++ return 0; ++ } ++ if (repcmp( ++ ((const char[]){0000, 0000, 0000, 0124, 0064, 0157, 0235, 0301, ++ 0000, 0000, 0000, 0000, 0000, 0000, 0000, 0000}))) { ++ fprintf(stdout, "IBM_DOUBLE_DOUBLE_LE"); ++ return 0; ++ } ++ if (repcmp( ++ ((const char[]){0301, 0235, 0157, 0064, 0124, 0000, 0000, 0000, ++ 0000, 0000, 0000, 0000, 0000, 0000, 0000, 0000}))) { ++ fprintf(stdout, "IBM_DOUBLE_DOUBLE_BE"); ++ return 0; ++ } ++ fprintf(stdout, "UNKNOWN"); ++ return 1; ++ } ++ } ++} ++''').stdout() ++if longdouble_format == 'UNKNOWN' or longdouble_format == 'UNDEFINED' ++ error('Unknown long double format of size: ' + cc.sizeof('long double').to_string()) + endif + cdata.set10('HAVE_LDOUBLE_' + longdouble_format, true) + + diff --git a/dev-python/numpy/files/numpy-1.25.0-skip-python3.12-irrelevant-tests.patch b/dev-python/numpy/files/numpy-1.25.0-skip-python3.12-irrelevant-tests.patch new file mode 100644 index 000000000000..cd829c5ef08e --- /dev/null +++ b/dev-python/numpy/files/numpy-1.25.0-skip-python3.12-irrelevant-tests.patch @@ -0,0 +1,187 @@ +https://github.com/numpy/numpy/commit/515403f2c637cb58f8dc326d88dd6f768f027cf4 +https://github.com/numpy/numpy/commit/b0872b858e2e6ebc394e95c81a024dcf1573c690 +https://github.com/numpy/numpy/commit/e42fc93b54a6d41dab72d86921f96e5ebc4c4198 +https://github.com/numpy/numpy/commit/4552b6cb0083502f731794e961cd30b9b62ba2e3 + +From 515403f2c637cb58f8dc326d88dd6f768f027cf4 Mon Sep 17 00:00:00 2001 +From: Ralf Gommers +Date: Sun, 18 Jun 2023 15:56:23 +0200 +Subject: [PATCH] TST: disable `test_new_policy` test for memory allocator. + +This is way too slow, running a large part of the test suite twice. +Issue 23975 tracks changing how this feature is tested. +--- + numpy/core/tests/test_mem_policy.py | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/numpy/core/tests/test_mem_policy.py b/numpy/core/tests/test_mem_policy.py +index b4e2f65916c..0855d60771a 100644 +--- a/numpy/core/tests/test_mem_policy.py ++++ b/numpy/core/tests/test_mem_policy.py +@@ -359,7 +359,7 @@ def test_thread_locality(get_module): + assert np.core.multiarray.get_handler_name() == orig_policy_name + + +-@pytest.mark.slow ++@pytest.mark.skip(reason="too slow, see gh-23975") + def test_new_policy(get_module): + a = np.arange(10) + orig_policy_name = np.core.multiarray.get_handler_name(a) + +From b0872b858e2e6ebc394e95c81a024dcf1573c690 Mon Sep 17 00:00:00 2001 +From: Ralf Gommers +Date: Mon, 19 Jun 2023 11:07:19 +0200 +Subject: [PATCH] TST: skip refcount related tests on py312 + +Python 3.12 has immortal refcounts; the initial and final +values will be the same when accessing `sys.getrefcount` inside a +test. + +Closes gh-23986 +--- a/numpy/core/tests/test_dtype.py ++++ b/numpy/core/tests/test_dtype.py +@@ -755,6 +755,11 @@ def iter_struct_object_dtypes(): + yield pytest.param(dt, p, 12, obj, id="") + + ++@pytest.mark.skipif( ++ sys.version_info >= (3, 12), ++ reason="Python 3.12 has immortal refcounts, this test will no longer " ++ "work. See gh-23986" ++) + @pytest.mark.skipif(not HAS_REFCOUNT, reason="Python lacks refcounts") + class TestStructuredObjectRefcounting: + """These tests cover various uses of complicated structured types which +--- a/numpy/core/tests/test_regression.py ++++ b/numpy/core/tests/test_regression.py +@@ -1465,6 +1465,10 @@ def test_structured_arrays_with_objects1(self): + x[x.nonzero()] = x.ravel()[:1] + assert_(x[0, 1] == x[0, 0]) + ++ @pytest.mark.skipif( ++ sys.version_info >= (3, 12), ++ reason="Python 3.12 has immortal refcounts, this test no longer works." ++ ) + @pytest.mark.skipif(not HAS_REFCOUNT, reason="Python lacks refcounts") + def test_structured_arrays_with_objects2(self): + # Ticket #1299 second test + +From e42fc93b54a6d41dab72d86921f96e5ebc4c4198 Mon Sep 17 00:00:00 2001 +From: Ralf Gommers +Date: Mon, 19 Jun 2023 11:14:38 +0200 +Subject: [PATCH] TST: skip memory allocator and `array_interface` tests on + py312 + +They require numpy.distutils, which isn't available on >=3.12 +The `numpy.testing.extbuild` utility will need changing to make this +work again. Could either use plain `setuptools` or `meson`. +--- a/numpy/core/tests/test_array_interface.py ++++ b/numpy/core/tests/test_array_interface.py +@@ -128,6 +128,9 @@ def get_module(tmp_path): + more_init=more_init) + + ++# FIXME: numpy.testing.extbuild uses `numpy.distutils`, so this won't work on ++# Python 3.12 and up. ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + @pytest.mark.slow + def test_cstruct(get_module): + +--- a/numpy/core/tests/test_mem_policy.py ++++ b/numpy/core/tests/test_mem_policy.py +@@ -9,6 +9,11 @@ + import sys + + ++# FIXME: numpy.testing.extbuild uses `numpy.distutils`, so this won't work on ++# Python 3.12 and up. It's an internal test utility, so for now we just skip ++# these tests. ++ ++ + @pytest.fixture + def get_module(tmp_path): + """ Add a memory policy that returns a false pointer 64 bytes into the +@@ -213,6 +218,7 @@ def get_module(tmp_path): + more_init=more_init) + + ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + def test_set_policy(get_module): + + get_handler_name = np.core.multiarray.get_handler_name +@@ -241,6 +247,7 @@ def test_set_policy(get_module): + assert get_handler_name() == orig_policy_name + + ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + def test_default_policy_singleton(get_module): + get_handler_name = np.core.multiarray.get_handler_name + +@@ -262,6 +269,7 @@ def test_default_policy_singleton(get_module): + assert def_policy_1 is def_policy_2 is get_module.get_default_policy() + + ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + def test_policy_propagation(get_module): + # The memory policy goes hand-in-hand with flags.owndata + +@@ -320,6 +328,7 @@ async def async_test_context_locality(get_module): + assert np.core.multiarray.get_handler_name() == orig_policy_name + + ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + def test_context_locality(get_module): + if (sys.implementation.name == 'pypy' + and sys.pypy_version_info[:3] < (7, 3, 6)): +@@ -341,6 +350,7 @@ def concurrent_thread2(get_module, event): + get_module.set_secret_data_policy() + + ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + def test_thread_locality(get_module): + orig_policy_name = np.core.multiarray.get_handler_name() + +@@ -359,6 +369,7 @@ def test_thread_locality(get_module): + assert np.core.multiarray.get_handler_name() == orig_policy_name + + ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + @pytest.mark.skip(reason="too slow, see gh-23975") + def test_new_policy(get_module): + a = np.arange(10) +@@ -388,6 +399,8 @@ def test_new_policy(get_module): + c = np.arange(10) + assert np.core.multiarray.get_handler_name(c) == orig_policy_name + ++ ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + @pytest.mark.xfail(sys.implementation.name == "pypy", + reason=("bad interaction between getenv and " + "os.environ inside pytest")) +@@ -420,6 +433,8 @@ def test_switch_owner(get_module, policy): + else: + os.environ['NUMPY_WARN_IF_NO_MEM_POLICY'] = oldval + ++ ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="no numpy.distutils") + def test_owner_is_base(get_module): + a = get_module.get_array_with_base() + with pytest.warns(UserWarning, match='warn_on_free'): + + +From 4552b6cb0083502f731794e961cd30b9b62ba2e3 Mon Sep 17 00:00:00 2001 +From: Ralf Gommers +Date: Mon, 19 Jun 2023 12:07:32 +0200 +Subject: [PATCH] TST: skip test using `np.load` on py2-saved .npy file on + py312 + +--- a/numpy/lib/tests/test_format.py ++++ b/numpy/lib/tests/test_format.py +@@ -527,6 +527,7 @@ def test_load_padded_dtype(tmpdir, dt): + assert_array_equal(arr, arr1) + + ++@pytest.mark.skipif(sys.version_info >= (3, 12), reason="see gh-23988") + @pytest.mark.xfail(IS_WASM, reason="Emscripten NODEFS has a buggy dup") + def test_python2_python3_interoperability(): + fname = 'win64python2.npy' diff --git a/dev-python/numpy/numpy-1.25.0.ebuild b/dev-python/numpy/numpy-1.25.0.ebuild index 9261cf73b3ba..b9b702ebe7a8 100644 --- a/dev-python/numpy/numpy-1.25.0.ebuild +++ b/dev-python/numpy/numpy-1.25.0.ebuild @@ -5,7 +5,7 @@ EAPI=8 DISTUTILS_EXT=1 DISTUTILS_USE_PEP517=meson-python -PYTHON_COMPAT=( python3_{10..11} ) +PYTHON_COMPAT=( python3_{10..12} ) PYTHON_REQ_USE="threads(+)" FORTRAN_NEEDED=lapack @@ -22,7 +22,7 @@ LICENSE="BSD" SLOT="0" IUSE="lapack" if [[ ${PV} != *_rc* ]] ; then - KEYWORDS="~amd64" + KEYWORDS="~amd64 ~arm ~arm64 ~ia64 ~ppc64" fi RDEPEND=" @@ -52,6 +52,8 @@ BDEPEND=" PATCHES=( "${FILESDIR}"/${PN}-1.25.0_rc1-meson-pyproject.toml.patch + "${FILESDIR}"/${PN}-1.25.0-skip-python3.12-irrelevant-tests.patch + "${FILESDIR}"/${PN}-1.25.0-fix-long-double-check.patch ) distutils_enable_tests pytest @@ -107,6 +109,9 @@ python_test() { EPYTEST_DESELECT+=( # too large for 32-bit platforms core/tests/test_ufunc.py::TestUfunc::test_identityless_reduction_huge_array + 'core/tests/test_multiarray.py::TestDot::test_huge_vectordot[float64]' + 'core/tests/test_multiarray.py::TestDot::test_huge_vectordot[complex128]' + lib/tests/test_histograms.py::TestHistogram::test_big_arrays ) ;; *) -- cgit v1.2.3