From 90a73bb153519a9eac2a23eb9029b99b759e7892 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sat, 9 Dec 2023 11:11:11 +0000 Subject: gentoo auto-resync : 09:12:2023 - 11:11:11 --- dev-python/pandas/Manifest | 3 + .../pandas/files/pandas-2.1.4-khash-dep.patch | 45 +++++ dev-python/pandas/pandas-2.1.4.ebuild | 221 +++++++++++++++++++++ 3 files changed, 269 insertions(+) create mode 100644 dev-python/pandas/files/pandas-2.1.4-khash-dep.patch create mode 100644 dev-python/pandas/pandas-2.1.4.ebuild (limited to 'dev-python/pandas') diff --git a/dev-python/pandas/Manifest b/dev-python/pandas/Manifest index 227b8a963eb4..414e0f0a79e9 100644 --- a/dev-python/pandas/Manifest +++ b/dev-python/pandas/Manifest @@ -1,11 +1,14 @@ AUX pandas-2.1.1-which.patch 393 BLAKE2B d5a988d64efbe28a1d2e533eae2d2ac88a31a08697a112682af1fce07429fff7e7846fe378d6ab487cf8aebf30b357c022763f5fc578e6b90c7ced1ea1af97f1 SHA512 3e7895561aab74e3b3afbad46f371f97fa4ae7b7f8158961896114a9c62e9a4544e81f9cdce983029809a95cc23350bb9698d8b4acc92f34e3a5b844b7811edb +AUX pandas-2.1.4-khash-dep.patch 1970 BLAKE2B fcd7b7426156de6061831a4a88c29a129cd2e860e8df33b44c4824a0dad448f088b0636cf5d9cfbc12894855580be990a30574e3a2374167240bf69239075dd5 SHA512 7a3a4bb61f4578b9a9b32134d5ff4c2772a387fcc77ec3c71a62bf9b33874c51a15e4f9097e922a1ac669cc150acd2d2f6ab086f759b838694105d5fd17a9a31 DIST pandas-1.5.3.tar.gz 5203060 BLAKE2B 846a6caa8ead6a2556303494f92e2091582d8fcde2aee424fa172c4e29c189a7305261f6a931a20249e969668646ff4a3d605ee1b57785fa3677dfbd137b3602 SHA512 3c725c33dcaf78b952d2eb966ced73ff0073162a01d3cbcb722d58d8f12a82163e6e684c27284c735bdfb32dea263b960f70f6a80ff93e6b316316d40835ae35 DIST pandas-2.1.1.tar.gz 4266250 BLAKE2B 9d8256300db65b606e34b16d7f3884b602794fe3c14d66115056db4a4658603fbe7a7a3082dfc781760517d643d6e21a6d4d43441131ec6aed5965b6fa8a0e9c SHA512 346e13e06805948c569712028c9b8d756c67ca2fab040999a51a4e759206d50d8ee25be38ac3c7cb3d2e692a02d85c1ec198841311fe43cb04b64f2741627a4e DIST pandas-2.1.2.tar.gz 4271419 BLAKE2B 2f22035c9b7d6a0403b28ebe506550328e096f0ed87984dba28d2f49950393ed8a5a3c0c71c5391385d9f5361319431d5de3736f7381eb7670045415b05137a7 SHA512 dad04f1fcc5a59485c34ebfed0698fd47ad9eeffafaddf91642c084f4ffde8a55ce543f9dadb6e7a5066b1809489961d34fe3fe8860f64f9bd2d90b445d92063 DIST pandas-2.1.3.tar.gz 4272855 BLAKE2B 73717926bb0af44acb9a2d12964df7bf70affd61ca19468b3af4376f9c8084d3612895a9ac5117be97658fd5b7ff0275cd7b2c6f1b9b0e00afb951fd50a1f103 SHA512 71012b47b76444e19507e444c8ef88497e3b286856690216886cbb67ad70786c2f5014a7cf6c89f8378769560109fb5593a8c82c21a034a1059769e15c843b92 +DIST pandas-2.1.4.tar.gz 4274800 BLAKE2B 71cd374964d5e751a9ea0b29cb341d7de521de8de3bbe0963fc821eb6fa2babf2a5cb87c0f49fab88fd451bd331d83fd216f199c75876d7c1ea367ba53c20178 SHA512 de02944829ea4df6a3913788c2ae30683504d70a1cef5789c927245dab8700981edd50de18af3619d30ac97f4658fce67f6c7637acf496bd464ad3a4109bfd1c EBUILD pandas-1.5.3.ebuild 7208 BLAKE2B fff882d8fa0b073fc458773aff5c2b722dd71da4169f9f9d2976ba45808356203b91d89964a23175cec16399455ec746dce28dd009d2bf502f7901c475f37575 SHA512 c4856c03c7239d3a9abecb78230c329a93d193f84ffeb5373b147c761c131d447d1bd7633f3fc8fb94c79d7dca93f9c3aa77b8ff24a0b875b1acf8a661c993d5 EBUILD pandas-2.1.1-r1.ebuild 8997 BLAKE2B 83b58674a2d1438f6f519768591307ba02a5fa36ad217cefec514cd83e0a8691cd52ffab68cb31dd359129edac75f3e3a0d1c8727ede6b655e145e9448343780 SHA512 06d20f7de75e0d71c83fab958a56f1f41eb9e22d6356b1807f04ae394608f502452949e61ea78bc924d0f24fb8160c5b9ee46969e2b0f0d182997c6e38699549 EBUILD pandas-2.1.1.ebuild 8640 BLAKE2B bbe6beafa3ad8f31bd18c9bc81974b881bf73c5c998d7c971cf4f8e97966c82d090b393eddc27ffc2d994fdab17eb7406a0752e5ff5ffb7601a6d92841ed8960 SHA512 2b900d7af96cd1842be557df89f44bf99e9e82e141a5b269e54027a1a588c53d91e2c13c6cb0fbaf4c36204078114ce497cd66e97445385eae5bd86daef10034 EBUILD pandas-2.1.2.ebuild 9010 BLAKE2B 97e206b691fd170cc2bff25fdc752da4b55ec3f881f54a2dff7db60484b2968bcbe4a9277bf000b6d30716e6afe8a544a067fb3ff099e47788f964b1e9232568 SHA512 a6718cefaec96d59e4d0d6b7ed23d2645074237a7a43c5bcd42058467dfb48ef4521ef00a6e5724b31f3ad31cf9b5851b099ed4961d27277f88a52be85ffe6fc EBUILD pandas-2.1.3.ebuild 8969 BLAKE2B ce3e49dcd527352a8bfcc6390d38d69857eebb7627561519d17a754cef5f275164849e2528fe9f662de6c45f5d736821d62cfb25cd62e68f07e35c28dce418b1 SHA512 2f31371bbcde6c6aad89abfb0c40c90853663468c974ed0e5de23d877a051bd713980ddf19133ef5336729a66ea01491d9c594b03a810122e66ae0291b03c21e +EBUILD pandas-2.1.4.ebuild 9189 BLAKE2B 4a3f9326950bfe522c5fe05219c315736004077cccfb6b68d8b0e7dc0ff98c19bc4e83af3563ffc1fd08e98c71616569e55ab7363668f34b418310d8c5ce231c SHA512 d0e7458f0fb7435d1ea017d6c9e87a8e2c1b19623006c8769dca626039e6d45ae7edd635ef9d89bb56f29a774a838a7ebf10bd77f9e544619fad2f978246cd03 MISC metadata.xml 920 BLAKE2B d6bd854acdd851d578038657d91adaedf4f220dbdc5905ebba5e35e74437c6d5bc2384061f7796a6f359aa128c526485635debfd0e1a9646d09daed740167c87 SHA512 dcd949e89cae9df918acb3cf8be5ad8c396ee5e646d2179aa2b646fafa15ffc11e9ccf853df8d7fdcc787f88ce7063639d8d87715aaba943774edc8ad98b540a diff --git a/dev-python/pandas/files/pandas-2.1.4-khash-dep.patch b/dev-python/pandas/files/pandas-2.1.4-khash-dep.patch new file mode 100644 index 000000000000..f8bbff5fed37 --- /dev/null +++ b/dev-python/pandas/files/pandas-2.1.4-khash-dep.patch @@ -0,0 +1,45 @@ +From e31a6865958442435ae9b31f312129c44f66eb5e Mon Sep 17 00:00:00 2001 +From: Ville Aikas <11279988+vaikas@users.noreply.github.com> +Date: Mon, 6 Nov 2023 09:24:40 -0800 +Subject: [PATCH] Add missing dependencies for: _khash_primitive_helper + (#55795) + +* Add missing dependencies for: _khash_primitive_helper + +Signed-off-by: Ville Aikas + +* source->dep change. + +Signed-off-by: Ville Aikas + +* Remove dep from arrays. + +Signed-off-by: Ville Aikas + +--------- + +Signed-off-by: Ville Aikas +--- + pandas/_libs/meson.build | 6 +++--- + 1 file changed, 3 insertions(+), 3 deletions(-) + +diff --git a/pandas/_libs/meson.build b/pandas/_libs/meson.build +index b4662d6bf8dd2..c27386743c6e9 100644 +--- a/pandas/_libs/meson.build ++++ b/pandas/_libs/meson.build +@@ -61,12 +61,12 @@ subdir('tslibs') + libs_sources = { + # Dict of extension name -> dict of {sources, include_dirs, and deps} + # numpy include dir is implicitly included +- 'algos': {'sources': ['algos.pyx', _algos_common_helper, _algos_take_helper, _khash_primitive_helper]}, ++ 'algos': {'sources': ['algos.pyx', _algos_common_helper, _algos_take_helper], 'deps': _khash_primitive_helper_dep}, + 'arrays': {'sources': ['arrays.pyx']}, + 'groupby': {'sources': ['groupby.pyx']}, + 'hashing': {'sources': ['hashing.pyx']}, +- 'hashtable': {'sources': ['hashtable.pyx', _khash_primitive_helper, _hashtable_class_helper, _hashtable_func_helper]}, +- 'index': {'sources': ['index.pyx', _index_class_helper]}, ++ 'hashtable': {'sources': ['hashtable.pyx', _hashtable_class_helper, _hashtable_func_helper], 'deps': _khash_primitive_helper_dep}, ++ 'index': {'sources': ['index.pyx', _index_class_helper], 'deps': _khash_primitive_helper_dep}, + 'indexing': {'sources': ['indexing.pyx']}, + 'internals': {'sources': ['internals.pyx']}, + 'interval': {'sources': ['interval.pyx', _intervaltree_helper], diff --git a/dev-python/pandas/pandas-2.1.4.ebuild b/dev-python/pandas/pandas-2.1.4.ebuild new file mode 100644 index 000000000000..f4a73c081111 --- /dev/null +++ b/dev-python/pandas/pandas-2.1.4.ebuild @@ -0,0 +1,221 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DISTUTILS_EXT=1 +DISTUTILS_USE_PEP517=meson-python +PYTHON_COMPAT=( python3_{10..12} ) +PYTHON_REQ_USE="threads(+)" + +VIRTUALX_REQUIRED="manual" + +inherit distutils-r1 optfeature pypi virtualx + +DESCRIPTION="Powerful data structures for data analysis and statistics" +HOMEPAGE=" + https://pandas.pydata.org/ + https://github.com/pandas-dev/pandas/ + https://pypi.org/project/pandas/ +" + +SLOT="0" +LICENSE="BSD" +KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86" +IUSE="full-support minimal test X" +RESTRICT="!test? ( test )" + +RECOMMENDED_DEPEND=" + >=dev-python/bottleneck-1.3.4[${PYTHON_USEDEP}] + >=dev-python/numexpr-2.8.0[${PYTHON_USEDEP}] +" + +# TODO: add pandas-gbq to the tree +# TODO: Re-add dev-python/statsmodel[python3_11] dep once it supports python3_11 +# https://github.com/statsmodels/statsmodels/issues/8287 +OPTIONAL_DEPEND=" + >=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}] + dev-python/blosc[${PYTHON_USEDEP}] + >=dev-python/html5lib-1.1[${PYTHON_USEDEP}] + >=dev-python/jinja-3.1.2[${PYTHON_USEDEP}] + >=dev-python/lxml-4.8.0[${PYTHON_USEDEP}] + >=dev-python/matplotlib-3.6.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-3.0.7[${PYTHON_USEDEP}] + >=dev-python/sqlalchemy-1.4.36[${PYTHON_USEDEP}] + >=dev-python/tables-3.7.0[${PYTHON_USEDEP}] + >=dev-python/tabulate-0.8.10[${PYTHON_USEDEP}] + >=dev-python/xarray-2022.3.0[${PYTHON_USEDEP}] + >=dev-python/xlrd-2.0.1[${PYTHON_USEDEP}] + >=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}] + >=dev-python/xlwt-1.3.0[${PYTHON_USEDEP}] + !hppa? ( + $(python_gen_cond_dep ' + dev-python/statsmodels[${PYTHON_USEDEP}] + ' python3_{8..10} ) + >=dev-python/scipy-1.8.1[${PYTHON_USEDEP}] + ) + X? ( + || ( + >=dev-python/PyQt5-5.15.6[${PYTHON_USEDEP}] + >=dev-python/QtPy-2.2.0[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) + ) +" +DEPEND=" + >=dev-python/numpy-1.23.2[${PYTHON_USEDEP}] +" +COMMON_DEPEND=" + ${DEPEND} + >=dev-python/python-dateutil-2.8.2[${PYTHON_USEDEP}] + >=dev-python/pytz-2020.1[${PYTHON_USEDEP}] +" +BDEPEND=" + ${COMMON_DEPEND} + >=dev-util/meson-1.2.1 + >=dev-python/cython-0.29.33[${PYTHON_USEDEP}] + >=dev-python/versioneer-0.28[${PYTHON_USEDEP}] + test? ( + ${VIRTUALX_DEPEND} + ${RECOMMENDED_DEPEND} + ${OPTIONAL_DEPEND} + >=dev-python/beautifulsoup4-4.11.1[${PYTHON_USEDEP}] + >=dev-python/hypothesis-6.46.1[${PYTHON_USEDEP}] + >=dev-python/openpyxl-3.0.10[${PYTHON_USEDEP}] + >=dev-python/pymysql-1.0.2[${PYTHON_USEDEP}] + >=dev-python/psycopg-2.9.3:2[${PYTHON_USEDEP}] + >=dev-python/xlsxwriter-3.0.3[${PYTHON_USEDEP}] + x11-misc/xclip + x11-misc/xsel + ) +" +RDEPEND=" + ${COMMON_DEPEND} + dev-python/tzdata[${PYTHON_USEDEP}] + !minimal? ( ${RECOMMENDED_DEPEND} ) + full-support? ( ${OPTIONAL_DEPEND} ) +" + +PATCHES=( + # a quick hack, it's already fixed in main + "${FILESDIR}/pandas-2.1.1-which.patch" + # https://github.com/pandas-dev/pandas/commit/e31a6865958442435ae9b31f312129c44f66eb5e + "${FILESDIR}/pandas-2.1.4-khash-dep.patch" +) + +EPYTEST_XDIST=1 +distutils_enable_tests pytest + +src_test() { + virtx distutils-r1_src_test +} + +python_test() { + local EPYTEST_DESELECT=( + # test for rounding errors, fails if we have better precision + # e.g. on amd64 with FMA or on arm64 + # https://github.com/pandas-dev/pandas/issues/38921 + tests/window/test_rolling.py::test_rolling_var_numerical_issues + + # TODO; unhappy about DISPLAY? + tests/test_downstream.py::test_seaborn + + # OOMs + tests/io/parser/test_c_parser_only.py::test_bytes_exceed_2gb + + # TODO: numexpr says "forbidden control characters" + tests/computation/test_eval.py::TestOperations::test_multi_line_expression_local_variable + 'tests/computation/test_eval.py::test_query_token[numexpr-Temp(\xb0C)]' + tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_lots_of_operators_string + tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_multiple_spaces + tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_parenthesis + tests/frame/test_query_eval.py::TestDataFrameQueryBacktickQuoting::test_start_with_spaces + tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_syntax + tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_local_variable_with_in + tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_nested_scope + tests/frame/test_query_eval.py::TestDataFrameQueryNumExprPandas::test_query_scope + + # TODO: missing data not covered by --no-strict-data-files? + tests/io/xml/test_xml.py::test_empty_stylesheet + tests/io/xml/test_xml.py::test_wrong_file_path + + # TODO + tests/frame/test_arithmetic.py::TestFrameFlexArithmetic::test_floordiv_axis0_numexpr_path + + # deprecation warning + tests/io/pytables/test_retain_attributes.py::test_retain_index_attributes2 + 'tests/computation/test_eval.py::TestEval::test_scalar_unary[numexpr-pandas]' + + # Needs 64-bit time_t (TODO: split into 32-bit arch only section) + tests/tseries/offsets/test_year.py::test_add_out_of_pydatetime_range + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessDay]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessHour]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthEnd]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BusinessMonthBegin]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterEnd]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-BQuarterBegin]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessDay]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessHour]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthEnd]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-CustomBusinessMonthBegin]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthEnd]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-MonthBegin]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthBegin]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-SemiMonthEnd]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-QuarterEnd]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-LastWeekOfMonth]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-WeekOfMonth]' + 'tests/tseries/offsets/test_common.py::test_apply_out_of_range[tzlocal()-Week]' + + # hdf / pytables have alignment problems: bug #911660 + # https://github.com/pandas-dev/pandas/issues/54396 + tests/io/pytables/test_append.py::test_append_frame_column_oriented + tests/io/pytables/test_store.py::test_select_filter_corner + + # blosc2 version + tests/io/pytables/test_file_handling.py::test_complibs\[blosc2-{1..9}\] + ) + + case ${EPYTHON} in + python3.12) + EPYTEST_DESELECT+=( + tests/io/pytables/test_select.py::test_select_dtypes + tests/io/pytables/test_select.py::test_frame_select + # deprecation warnings + tests/io/excel/test_writers.py::TestRoundTrip::test_read_excel_parse_dates + # some pytest-xdist problem? + tests/base/test_unique.py::test_unique_bad_unicode + ) + ;; + esac + + local -x LC_ALL=C.UTF-8 + cd "${BUILD_DIR}/install$(python_get_sitedir)" || die + "${EPYTHON}" -c "import pandas; pandas.show_versions()" || die + # --no-strict-data-files is necessary since upstream prevents data + # files from even being included in GitHub archives, sigh + # https://github.com/pandas-dev/pandas/issues/54907 + local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1 + epytest pandas/tests \ + --no-strict-data-files \ + -m "not single and not slow and not network" || + die "Tests failed with ${EPYTHON}" + rm test-data.xml || die +} + +pkg_postinst() { + optfeature "accelerating certain types of NaN evaluations, using specialized cython routines to achieve large speedups." dev-python/bottleneck + optfeature "accelerating certain numerical operations, using multiple cores as well as smart chunking and caching to achieve large speedups" ">=dev-python/numexpr-2.1" + optfeature "needed for pandas.io.html.read_html" dev-python/beautifulsoup4 dev-python/html5lib dev-python/lxml + optfeature "for msgpack compression using blosc" dev-python/blosc + optfeature "Template engine for conditional HTML formatting" dev-python/jinja + optfeature "Plotting support" dev-python/matplotlib + optfeature "Needed for Excel I/O" ">=dev-python/openpyxl-3.0.10" dev-python/xlsxwriter dev-python/xlrd dev-python/xlwt + optfeature "necessary for HDF5-based storage" ">=dev-python/tables-3.7.0" + optfeature "R I/O support" dev-python/rpy + optfeature "Needed for parts of pandas.stats" dev-python/statsmodels + optfeature "SQL database support" ">=dev-python/sqlalchemy-1.4.36" + optfeature "miscellaneous statistical functions" dev-python/scipy + optfeature "necessary to use pandas.io.clipboard.read_clipboard support" dev-python/PyQt5 dev-python/QtPy dev-python/pygtk x11-misc/xclip x11-misc/xsel +} -- cgit v1.2.3