From 5a31d854eec302fd1efb1466af757e520ae4e1dc Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sun, 19 Nov 2023 17:06:50 +0000 Subject: gentoo auto-resync : 19:11:2023 - 17:06:49 --- dev-python/scipy/Manifest | 5 +- dev-python/scipy/scipy-1.11.3-r1.ebuild | 14 +-- dev-python/scipy/scipy-1.11.4.ebuild | 147 ++++++++++++++++++++++++++++++++ 3 files changed, 159 insertions(+), 7 deletions(-) create mode 100644 dev-python/scipy/scipy-1.11.4.ebuild (limited to 'dev-python/scipy') diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest index 79033d75bb1c..7dd5cff75f47 100644 --- a/dev-python/scipy/Manifest +++ b/dev-python/scipy/Manifest @@ -5,12 +5,15 @@ DIST scipy-1.11.0.tar.gz 56030121 BLAKE2B e700bf8f9cffa7bc0f4832722010dcf2e03d8f DIST scipy-1.11.1.tar.gz 56031509 BLAKE2B 456a80103f8c31c456f80e06b25d765f7ad5655dbdd49e99f476e78273f4291c578a8e99fda3f3a1e848c0e75e08629a09a8146b4a798e85edcaffb7ed1d34a9 SHA512 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74a21c6e1a9bef95b3d74a9513c59d302f473725c04fa32a9991b6108113c0f4b78179ce4a628140e7aa870c24ca60bddf7a00063b6b73dd45110112311371d8 diff --git a/dev-python/scipy/scipy-1.11.3-r1.ebuild b/dev-python/scipy/scipy-1.11.3-r1.ebuild index 7abc66ad2ceb..8796c0eb8138 100644 --- a/dev-python/scipy/scipy-1.11.3-r1.ebuild +++ b/dev-python/scipy/scipy-1.11.3-r1.ebuild @@ -110,6 +110,12 @@ python_test() { # Crashes with assertion, not a regression # https://github.com/scipy/scipy/issues/19321 scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object + + # timeouts + scipy/sparse/linalg/tests/test_propack.py::test_examples + # hang or incredibly slow + scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient + scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient ) local EPYTEST_IGNORE=() @@ -122,13 +128,9 @@ python_test() { case ${EPYTHON} in pypy3) EPYTEST_DESELECT+=( - # TODO: fd leaks? + # fd leaks in tests + # https://github.com/scipy/scipy/issues/19553 scipy/fft/_pocketfft/tests/test_real_transforms.py - # timeouts - scipy/sparse/linalg/tests/test_propack.py::test_examples - # hang or incredibly slow - scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient - scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient # TODO 'scipy/special/tests/test_data.py::test_boost[]' ) diff --git a/dev-python/scipy/scipy-1.11.4.ebuild b/dev-python/scipy/scipy-1.11.4.ebuild new file mode 100644 index 000000000000..fb211087c17a --- /dev/null +++ b/dev-python/scipy/scipy-1.11.4.ebuild @@ -0,0 +1,147 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran +DISTUTILS_EXT=1 +DISTUTILS_USE_PEP517=meson-python +PYTHON_COMPAT=( pypy3 python3_{10..12} ) +PYTHON_REQ_USE="threads(+)" + +inherit fortran-2 distutils-r1 multiprocessing + +DESCRIPTION="Scientific algorithms library for Python" +HOMEPAGE=" + https://scipy.org/ + https://github.com/scipy/scipy/ + https://pypi.org/project/scipy/ +" + +if [[ ${PV} == *9999* ]] ; then + inherit git-r3 + + # Need submodules, so git for now. + EGIT_REPO_URI="https://github.com/scipy/scipy" + EGIT_BRANCH="maintenance/$(ver_cut 1-2).x" + EGIT_SUBMODULES=( '*' ) +else + inherit pypi + + # Upstream is often behind with doc updates + #DOC_PV=${PV} + DOC_PV=1.11.2 + + SRC_URI+=" + doc? ( + https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip + )" + + if [[ ${PV} != *rc* ]] ; then + KEYWORDS="~amd64 ~arm ~arm64 ~loong ~riscv ~sparc ~x86" + fi +fi + +LICENSE="BSD LGPL-2" +SLOT="0" +IUSE="doc +fortran test-rust" + +# umfpack is technically optional but it's preferred to have it available. +DEPEND=" + >=dev-python/numpy-1.21.6[lapack,${PYTHON_USEDEP}] + sci-libs/arpack:= + sci-libs/umfpack + virtual/cblas + >=virtual/lapack-3.8 +" +RDEPEND=" + ${DEPEND} + dev-python/pillow[${PYTHON_USEDEP}] +" +BDEPEND=" + dev-lang/swig + >=dev-python/cython-0.29.35[${PYTHON_USEDEP}] + >=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}] + >=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}] + >=dev-util/meson-1.1.0 + !kernel_Darwin? ( dev-util/patchelf ) + virtual/pkgconfig + doc? ( app-arch/unzip ) + fortran? ( dev-python/pythran[${PYTHON_USEDEP}] ) + test? ( + dev-python/pytest-xdist[${PYTHON_USEDEP}] + ) + test-rust? ( + dev-python/pooch[${PYTHON_USEDEP}] + ) +" + +distutils_enable_tests pytest + +src_unpack() { + default + + if use doc; then + unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die + fi +} + +python_configure_all() { + DISTUTILS_ARGS=( + -Dblas=blas + -Dlapack=lapack + -Duse-pythran=$(usex fortran true false) + ) +} + +python_test() { + cd "${BUILD_DIR}/install$(python_get_sitedir)" || die + + local EPYTEST_DESELECT=( + # Network + scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all + scipy/datasets/tests/test_data.py::TestDatasets::test_ascent + scipy/datasets/tests/test_data.py::TestDatasets::test_face + scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram + + # Precision issue with diff. blas? + scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799 + + # Crashes with assertion, not a regression + # https://github.com/scipy/scipy/issues/19321 + scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object + + # timeouts + scipy/sparse/linalg/tests/test_propack.py::test_examples + # hang or incredibly slow + scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient + scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient + ) + local EPYTEST_IGNORE=() + + if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then + EPYTEST_IGNORE+=( + scipy/datasets/tests/test_data.py + ) + fi + + case ${EPYTHON} in + pypy3) + EPYTEST_DESELECT+=( + # fd leaks in tests + # https://github.com/scipy/scipy/issues/19553 + scipy/fft/_pocketfft/tests/test_real_transforms.py + # TODO + 'scipy/special/tests/test_data.py::test_boost[]' + ) + ;; + esac + + epytest -n "$(makeopts_jobs)" --dist=worksteal scipy +} + +python_install_all() { + use doc && local HTML_DOCS=( "${WORKDIR}"/html/. ) + + distutils-r1_python_install_all +} -- cgit v1.2.3