From 4cbcc855382a06088e2f016f62cafdbcb7e40665 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@koprulu.sector>
Date: Sun, 20 Mar 2022 00:40:44 +0000
Subject: gentoo resync : 20.03.2022

---
 eclass/emboss-r3.eclass | 131 ++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 131 insertions(+)
 create mode 100644 eclass/emboss-r3.eclass

(limited to 'eclass/emboss-r3.eclass')

diff --git a/eclass/emboss-r3.eclass b/eclass/emboss-r3.eclass
new file mode 100644
index 000000000000..bc372152cd93
--- /dev/null
+++ b/eclass/emboss-r3.eclass
@@ -0,0 +1,131 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+# @ECLASS: emboss-r3.eclass
+# @MAINTAINER:
+# sci-biology@gentoo.org
+# @AUTHOR:
+# Original author: Author Olivier Fisette <ofisette@gmail.com>
+# Next gen author: Justin Lecher <jlec@gentoo.org>
+# Next gen author: Ted Tanberry <ted.tanberry@gmail.com>
+# @SUPPORTED_EAPIS: 8
+# @BLURB: Use this to easy install EMBOSS and EMBASSY programs (EMBOSS add-ons).
+# @DESCRIPTION:
+# The inheriting ebuild must provide EBO_DESCRIPTION before the inherit line.
+#
+# Example:
+#
+# EAPI=8
+#
+# EBO_DESCRIPTION="applications from the CBS group"
+#
+# inherit emboss-r3
+
+# @ECLASS-VARIABLE: EBO_DESCRIPTION
+# @PRE_INHERIT
+# @DEFAULT_UNSET
+# @DESCRIPTION:
+# Completes the generic description of the embassy module as follows:
+#
+# EMBOSS integrated version of ${EBO_DESCRIPTION}, e.g.
+#
+# "EMBOSS integrated version of applications from the CBS group"
+#
+# Defaults to the upstream name of the module.
+
+case ${EAPI} in
+	8) ;;
+	*) die "${ECLASS}: EAPI ${EAPI:-0} not supported" ;;
+esac
+
+if [[ ! ${_EMBOSS_R3_ECLASS} ]]; then
+_EMBOSS_R3_ECLASS=1
+
+inherit flag-o-matic
+
+HOMEPAGE="http://emboss.sourceforge.net/"
+
+LICENSE="LGPL-2 GPL-2"
+SLOT="0"
+IUSE="mysql pdf png postgres X"
+
+RDEPEND="
+	dev-libs/expat
+	dev-libs/libpcre:3
+	sci-libs/plplot:=
+	sys-libs/zlib
+	mysql? ( dev-db/mysql-connector-c:0= )
+	pdf? ( media-libs/libharu:= )
+	png? ( media-libs/gd:2=[png] )
+	postgres? ( dev-db/postgresql:= )
+	X? ( x11-libs/libXt )"
+
+if [[ ${PN} == embassy-* ]]; then
+	EMBASSY_PACKAGE=yes
+	# The EMBASSY package name, retrieved from the inheriting ebuild's name
+	EN=${PN:8}
+	# The full name and version of the EMBASSY package (excluding the Gentoo
+	# revision number)
+	EF="${EN^^}-${PV}"
+
+	[[ ${EBO_DESCRIPTION} ]] || die "EBO_DESCRIPTION was not set before inheriting emboss-r3.eclass"
+
+	DESCRIPTION="EMBOSS integrated version of ${EBO_DESCRIPTION}"
+	SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/${EF}.tar.gz -> embassy-${EN}-${PV}.tar.gz"
+	RDEPEND+=" >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]"
+
+	S="${WORKDIR}/${EF}"
+fi
+
+DEPEND="${RDEPEND}"
+
+# @FUNCTION: emboss-r3_src_configure
+# @DESCRIPTION:
+# runs econf with following options.
+#
+#  --enable-shared
+#  $(use_with X x)
+#  $(use_with png pngdriver)
+#  $(use_with pdf hpdf)
+#  $(use_with mysql mysql)
+#  $(use_with postgres postgresql)
+#  --enable-large
+#  --without-java
+#  --enable-systemlibs
+#
+#  can be appended to like econf, e.g.
+#    emboss-r3_src_configure --enable-foo
+
+emboss-r3_src_configure() {
+	local myconf=(
+		--enable-shared
+		$(use_with X x)
+		$(use_with png pngdriver "${ESYSROOT}"/usr)
+		$(use_with pdf hpdf "${ESYSROOT}"/usr)
+		$(use_with mysql mysql "${EPREFIX}"/usr/bin/mysql_config)
+		$(use_with postgres postgresql "${EPREFIX}"/usr/bin/pg_config)
+		--enable-large
+		--without-java
+		--enable-systemlibs
+	)
+
+	[[ ${EMBASSY_PACKAGE} == yes ]] &&
+		append-cppflags "-I${ESYSROOT}/usr/include/emboss"
+
+	econf "${myconf[@]}" "$@"
+}
+
+# @FUNCTION: emboss-r3_src_install
+# @DESCRIPTION:
+# Installs the package into the staging area and removes unnecessary .la files.
+
+emboss-r3_src_install() {
+	default
+
+	# delete .la files
+	find "${ED}" -name '*.la' -delete || die
+}
+
+fi
+
+EXPORT_FUNCTIONS src_configure src_install
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