From 46eedbedafdb0040c37884982d4c775ce277fb7b Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Wed, 20 Oct 2021 10:22:14 +0100 Subject: gentoo resync : 20.10.2021 --- sci-biology/bcftools/Manifest | 2 -- sci-biology/bcftools/bcftools-1.10.2.ebuild | 43 ----------------------------- 2 files changed, 45 deletions(-) delete mode 100644 sci-biology/bcftools/bcftools-1.10.2.ebuild (limited to 'sci-biology/bcftools') diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest index 359793c2e6bc..572ee9298e8a 100644 --- a/sci-biology/bcftools/Manifest +++ b/sci-biology/bcftools/Manifest @@ -1,5 +1,3 @@ -DIST bcftools-1.10.2.tar.bz2 3702679 BLAKE2B 51acce94d463868562199206504dc8afb50c671c11139c5a96f52cedf135bb7a46115c69411b9943b970a2395e3c866275c85e345a4a40a90194d1094698314e SHA512 f07e405efa16b9b1b18521342df3eaf840ed1b3028b736a6b4d139012ea85769ddfb3cd3a2c94958415d984d07805dfcd3d4bbec0db401b3f071b861a56d1300 DIST bcftools-1.13.tar.bz2 6906796 BLAKE2B 4c02d65733d28684f9a976e082913d79dbac4463c9471fc26d8ee0cbe7ad25af429cf7d01b9771bc34309386ccd2d77ebd54fbf64ed4183d1c2ebfbc0e727afb SHA512 aa533233dd2fec2279859204be39430c4fc630137a91d57fe917fd7a220044d5202ddc3d44bcffc3bd5bd5bb64f6ea4c8ec3c31e5e1ec72399998f1e6f23a55a -EBUILD bcftools-1.10.2.ebuild 864 BLAKE2B b98c493d6e50d982917ecbf32c424a45231c3f512a49a0c9cd675cbb3d5f21a57d62cc53a20556663b6fd1d58a68df01a9ed56185dd5f400b8ee5b5c7b5497fd SHA512 c8c3173376a35824ce10413e7cba172d6a90dae91352a292df5603f1a7e17cd5987fc91b463b030221b577bce5424ae7a219625cb684cb3fa2f6777581bb19bb EBUILD bcftools-1.13.ebuild 896 BLAKE2B 74b1387b81ec75926bd76d62033d7cf0708ac3b9a0b0b0573fec1c70efb47b84bd3fa626f3ff3144e380f07822bd3d9e56f4ddb1e09a4a09082cb1d6d3229b39 SHA512 bb0f18c2102fbfa8d5ee636c81308ea8a0ef6de80943423377846ebd2180881ca745e7eddd94be7ad7b34a2313acc43553d8a31ee474542de5d29d4874e935e4 MISC metadata.xml 344 BLAKE2B 37f8e82e8a5a9ad572580a7e5ae6daa6911d672f17b8526f81b236cbc2e50a32c4cd2566aaed9f5feee016d7e2de7db2a40b60616e86c3e8cae307d60cebc70e SHA512 0160c9606089d610613d71dc0aa9c9c5e5266483fdc9c407b6e0ed911eac8f8b32ffaf5a49bbb427393c8240e9868df51f0fc68b2f45467f65d9b3d54b0ddde1 diff --git a/sci-biology/bcftools/bcftools-1.10.2.ebuild b/sci-biology/bcftools/bcftools-1.10.2.ebuild deleted file mode 100644 index a484f69133e5..000000000000 --- a/sci-biology/bcftools/bcftools-1.10.2.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{8..9} ) - -inherit python-single-r1 - -DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files" -HOMEPAGE="http://www.htslib.org" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - dev-lang/perl - $(python_gen_cond_dep ' - dev-python/matplotlib[${PYTHON_USEDEP}] - ') - =sci-libs/htslib-${PV}*:= - sys-libs/zlib:= - ${PYTHON_DEPS}" -DEPEND="${RDEPEND}" - -src_prepare() { - default - - python_fix_shebang misc/{guess-ploidy,plot-roh}.py - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --disable-bcftools-plugins \ - --disable-libgsl \ - --with-htslib=system -} -- cgit v1.2.3