From 4cbcc855382a06088e2f016f62cafdbcb7e40665 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sun, 20 Mar 2022 00:40:44 +0000 Subject: gentoo resync : 20.03.2022 --- sci-biology/bioperl/Manifest | 2 +- sci-biology/bioperl/bioperl-1.6.9-r1.ebuild | 64 +++++++++++++++++++++++++++ sci-biology/bioperl/bioperl-1.6.9.ebuild | 67 ----------------------------- 3 files changed, 65 insertions(+), 68 deletions(-) create mode 100644 sci-biology/bioperl/bioperl-1.6.9-r1.ebuild delete mode 100644 sci-biology/bioperl/bioperl-1.6.9.ebuild (limited to 'sci-biology/bioperl') diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest index c7533e05fdc8..e08d199b50f6 100644 --- a/sci-biology/bioperl/Manifest +++ b/sci-biology/bioperl/Manifest @@ -1,3 +1,3 @@ DIST BioPerl-1.6.901.tar.gz 12284856 BLAKE2B 004947fde9d02355ac96f71b67a33a27d6d0163892c978ac9059e70e089fb83b473e21252c5217dfba8faaa65bc3d2eebb8826d03f29a13409e2b6d337316b42 SHA512 227387437c940da1435ed83fad6ec2168ca12a729c90dc557e84750c6474213874c23a8f23e50db4027909469627baee581faa11be6208c8e0a5453a01c7eca4 -EBUILD bioperl-1.6.9.ebuild 1542 BLAKE2B 199c44bf5e2b018efa79c387c247adcade5e477199b9ac7c9dcff8fa98db413520d8365c16ebfe2e38afd799cbd3f1f07a49a24272f3afa3bb8a9aa6a326a493 SHA512 f810d4f0290cfffc3efadc3ce597de747e877c02a302de0614b82209b776dc8c631eeabc3331e9ee4cb590255c5aeb75703f48361453f779c477ed7b64ae8c03 +EBUILD bioperl-1.6.9-r1.ebuild 1488 BLAKE2B 7a8ad3ad21b292fed0453d9965694aad7f383539f4ff2a689c26c0ff129e8a3d40a8fced69222423e39344e947fb58489620b34fb6bf904f1d4bc6747aa53d42 SHA512 2c41a0018ec7f11f3f45a9c2b003921a88e7205b22ac82fd4255267e825080e5f0e8bd1adb2b86b3c204eafb8920bad4ac9f34b4a100b71103469fb1dd46a9e3 MISC metadata.xml 542 BLAKE2B 3ad1ab0c76d1fa604901646d0431a46718a0c01ce90c964e0f3855d3f487ae4a36d1550737cb5f4dc3f800d0a81329e742c9ed9b5fec346a4d53c71cf7543cae SHA512 289ed0f5f8fff5dee11c050dd37b53418ef9278071dc5700288392ae5e3e44b706692eb89ad61a31327218458926017aefa7320c8c51395c5c6400d10eb4b516 diff --git a/sci-biology/bioperl/bioperl-1.6.9-r1.ebuild b/sci-biology/bioperl/bioperl-1.6.9-r1.ebuild new file mode 100644 index 000000000000..2896271e137a --- /dev/null +++ b/sci-biology/bioperl/bioperl-1.6.9-r1.ebuild @@ -0,0 +1,64 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DIST_AUTHOR=CJFIELDS +DIST_NAME=BioPerl +DIST_VERSION=1.6.901 +inherit perl-module + +SUBPROJECTS="+db +network +run" +MIN_PV="${PV}" + +DESCRIPTION="Perl tools for bioinformatics - Core modules" +HOMEPAGE="http://www.bioperl.org/" + +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="minimal graphviz sqlite ${SUBPROJECTS}" +REQUIRED_USE="minimal? ( !graphviz )" + +RDEPEND=" + dev-perl/libwww-perl + !minimal? ( + dev-perl/Algorithm-Munkres + dev-perl/Array-Compare + dev-perl/YAML + dev-perl/Bio-ASN1-EntrezGene + dev-perl/Clone + dev-perl/Convert-Binary-C + dev-perl/Data-Stag + dev-perl/GD + dev-perl/Graph + >=dev-perl/HTML-Parser-3.60 + dev-perl/List-MoreUtils + dev-perl/Math-Random + dev-perl/PostScript + dev-perl/Set-Scalar + dev-perl/SOAP-Lite + dev-perl/Sort-Naturally + dev-perl/Spreadsheet-ParseExcel + >=virtual/perl-Storable-2.05 + >=dev-perl/SVG-2.26 + >=dev-perl/SVG-Graph-0.01 + dev-perl/URI + >=dev-perl/XML-DOM-XPath-0.13 + dev-perl/XML-Parser + >=dev-perl/XML-SAX-0.15 + dev-perl/XML-Simple + dev-perl/XML-Twig + >=dev-perl/XML-Writer-0.4 + dev-perl/XML-DOM + dev-perl/XML-XPath + ) + graphviz? ( dev-perl/GraphViz ) + sqlite? ( dev-perl/DBD-SQLite )" +DEPEND="${RDEPEND}" +PDEPEND=" + db? ( >=sci-biology/bioperl-db-${MIN_PV} ) + network? ( >=sci-biology/bioperl-network-${MIN_PV} ) + run? ( >=sci-biology/bioperl-run-${MIN_PV} )" +BDEPEND="dev-perl/Module-Build" + +mydoc="AUTHORS BUGS FAQ" diff --git a/sci-biology/bioperl/bioperl-1.6.9.ebuild b/sci-biology/bioperl/bioperl-1.6.9.ebuild deleted file mode 100644 index c39c6244592b..000000000000 --- a/sci-biology/bioperl/bioperl-1.6.9.ebuild +++ /dev/null @@ -1,67 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI="5" - -MY_PN=BioPerl -MODULE_AUTHOR=CJFIELDS -MODULE_VERSION=1.6.901 -inherit perl-module - -SUBPROJECTS="+db +network +run" -MIN_PV=${PV} - -DESCRIPTION="Perl tools for bioinformatics - Core modules" -HOMEPAGE="http://www.bioperl.org/" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="minimal graphviz sqlite ${SUBPROJECTS}" - -REQUIRED_USE="minimal? ( !graphviz )" - -CDEPEND=" - dev-perl/libwww-perl - !minimal? ( - dev-perl/Algorithm-Munkres - dev-perl/Array-Compare - dev-perl/YAML - dev-perl/Bio-ASN1-EntrezGene - dev-perl/Clone - dev-perl/Convert-Binary-C - dev-perl/Data-Stag - dev-perl/GD - dev-perl/Graph - >=dev-perl/HTML-Parser-3.60 - dev-perl/List-MoreUtils - dev-perl/Math-Random - dev-perl/PostScript - dev-perl/Set-Scalar - dev-perl/SOAP-Lite - dev-perl/Sort-Naturally - dev-perl/Spreadsheet-ParseExcel - >=virtual/perl-Storable-2.05 - >=dev-perl/SVG-2.26 - >=dev-perl/SVG-Graph-0.01 - dev-perl/URI - >=dev-perl/XML-DOM-XPath-0.13 - dev-perl/XML-Parser - >=dev-perl/XML-SAX-0.15 - dev-perl/XML-Simple - dev-perl/XML-Twig - >=dev-perl/XML-Writer-0.4 - dev-perl/XML-DOM - dev-perl/XML-XPath - ) - graphviz? ( dev-perl/GraphViz ) - sqlite? ( dev-perl/DBD-SQLite )" -DEPEND="dev-perl/Module-Build - ${CDEPEND}" -RDEPEND="${CDEPEND}" -PDEPEND="db? ( >=sci-biology/bioperl-db-${MIN_PV} ) - network? ( >=sci-biology/bioperl-network-${MIN_PV} ) - run? ( >=sci-biology/bioperl-run-${MIN_PV} )" - -src_install() { - mydoc="AUTHORS BUGS FAQ" - perl-module_src_install -} -- cgit v1.2.3