From 4f2d7949f03e1c198bc888f2d05f421d35c57e21 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Mon, 9 Oct 2017 18:53:29 +0100
Subject: reinit the tree, so we can have metadata

---
 sci-biology/mummer/mummer-3.23.ebuild | 46 +++++++++++++++++++++++++++++++++++
 1 file changed, 46 insertions(+)
 create mode 100644 sci-biology/mummer/mummer-3.23.ebuild

(limited to 'sci-biology/mummer/mummer-3.23.ebuild')

diff --git a/sci-biology/mummer/mummer-3.23.ebuild b/sci-biology/mummer/mummer-3.23.ebuild
new file mode 100644
index 000000000000..4839053f4191
--- /dev/null
+++ b/sci-biology/mummer/mummer-3.23.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit flag-o-matic toolchain-funcs
+
+DESCRIPTION="A rapid whole genome aligner"
+HOMEPAGE="http://mummer.sourceforge.net/"
+SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc"
+
+DEPEND=""
+RDEPEND="
+	app-shells/tcsh
+	dev-lang/perl"
+
+S=${WORKDIR}/MUMmer${PV}
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-3.23-fix-build-system.patch
+	"${FILESDIR}"/${PN}-3.23-fix-c++-qa.patch
+	"${FILESDIR}"/${PN}-3.23-fix-shebangs.patch
+)
+
+src_configure() {
+	use amd64 && append-cppflags -DSIXTYFOURBITS
+	tc-export AR CC CXX
+}
+
+src_install() {
+	dobin src/kurtz/mm3src/mummer
+	dobin src/tigr/{combineMUMs,delta-filter,gaps,mgaps,postnuc,postpro,prenuc,prepro,repeat-match,show-aligns,show-coords,show-tiling,show-snps,show-diff}
+	dobin scripts/{exact-tandems,mapview,mummerplot,dnadiff,nucmer,promer,run-mummer1,run-mummer3,nucmer2xfig}
+	newbin src/tigr/annotate mummer-annotate
+
+	insinto /usr/share/${PN}/lib
+	doins scripts/Foundation.pm
+
+	einstalldocs
+	use doc && dodoc -r docs/.
+}
-- 
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