From 721e451ec418e1712f6962404e111f0ebd487389 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Fri, 27 Dec 2024 06:30:35 +0000 Subject: gentoo auto-resync : 27:12:2024 - 06:30:34 --- sci-biology/seaview/Manifest | 2 +- sci-biology/seaview/seaview-4.6-r1.ebuild | 82 ------------------------------- sci-biology/seaview/seaview-4.6-r2.ebuild | 82 +++++++++++++++++++++++++++++++ 3 files changed, 83 insertions(+), 83 deletions(-) delete mode 100644 sci-biology/seaview/seaview-4.6-r1.ebuild create mode 100644 sci-biology/seaview/seaview-4.6-r2.ebuild (limited to 'sci-biology/seaview') diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest index bef0a16e2247..29e8e2895ab7 100644 --- a/sci-biology/seaview/Manifest +++ b/sci-biology/seaview/Manifest @@ -1,5 +1,5 @@ AUX seaview-4.6-Wreserved-user-defined-literal.patch 3271 BLAKE2B 695411acffed448ecc792753a9c8f969e4e88fea711b163a9b45f7b5878e44f5504d162991924958d8910c5eb7241b893ae27ea328a5efb754ba13ed0ddf7422 SHA512 fe9837a85e68e486fcc1a1903af027a71916aa70bf54d8616f5be6b13c52ca4ca7f5d2901724e3ec2e3e754c2772c59d3db78fb6e75432ef7f67e99692571bfe AUX seaview-4.6-fno-common.patch 3171 BLAKE2B a3dfdb8d90279cdc16489d5e304eb81d3893f63d55ec5363d86fce5d90aa87c003fb2f41dafb09f46002aa1b45871161ff5b0de6e22bd24d77c98727880818d5 SHA512 89b1d46956232b6c7a3979c804339e2bc4e9f99224c7c06091a2526c92ddd55415762a39d183e0249ae7251afada28bfb6f863bd91167ea647d76d4c548c1f6a DIST seaview_4.6.tar.gz 424258 BLAKE2B e958ff4b1f6bb283a2122d65917a352914f33e5c9593c34c449800fbcac74b0dd4fa98bb1f47c45e11f24e07dfebb3ced54fbd8440b2bcd2b1df32dc398d5892 SHA512 e005d9dcc9e03c5636404e94f0059f7d4a9289fe77ecdab765e3ca2b59d826b8711a344f3824d079383a7ede0fe17b3b06694dfb7b709bb6a0a1e38cef6ee1d6 -EBUILD seaview-4.6-r1.ebuild 2106 BLAKE2B 6a7d4e6295285cd072db997acc3f9467fb46a813a8da640372ec55228792d85f43fce137b2c5f90d60c6e77918280192967001ad7ac6a2a80a69c390cf6ed218 SHA512 76b24794f87383ec39638569e7c61c5f500ea84a89cabb04d1bbcf101bffecc97e99729a4e29f3d4252a980c8a40889d1e4161ebea272a09946a78ecd4b75f4c +EBUILD seaview-4.6-r2.ebuild 2110 BLAKE2B e0da4f6c8fc7fdc90fdc913be385d2be82c6058b3787014dbcd05f4419f3aabc099b4393d4cbc80f669719c518b6404c78ac7f1fc5201f8f5cb9b6c5a04779d4 SHA512 7c1ec6c746b08b54f885e5e0491cfa8ebcfaf1f5222bbf835a1c580c5cb53cf441bd1f8f6298c957836246151f0a4f664498af1cae4aeeb6b3710ea1848e6b22 MISC metadata.xml 622 BLAKE2B 3b86dd7c735c8040c3fe5b0dfc24450efcda632d2e7b785094ff7da08b7dacad6cecbc698def1db693507b2f2d7503199f5e453d5221d6211ca4e5b5e674cfcf SHA512 efb6a829a8c287dd058d132ad5db56d41d1c555c5610e66ee907edbd34ed28f6e6168def8d746b3ab0a14ec4a713b1b11018ffe948a6a83895d48462bf0d06e6 diff --git a/sci-biology/seaview/seaview-4.6-r1.ebuild b/sci-biology/seaview/seaview-4.6-r1.ebuild deleted file mode 100644 index 469f88728120..000000000000 --- a/sci-biology/seaview/seaview-4.6-r1.ebuild +++ /dev/null @@ -1,82 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit desktop toolchain-funcs - -DESCRIPTION="A graphical multiple sequence alignment editor" -HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" -SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz" - -LICENSE="public-domain" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="+xft" - -RDEPEND=" - sci-biology/clustalw:2 - sci-biology/phyml - || ( - sci-libs/libmuscle - sci-biology/muscle - ) - sys-libs/zlib - x11-libs/fltk:1[xft?] - x11-libs/libX11 - xft? ( x11-libs/libXft )" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -S="${WORKDIR}/${PN}" -PATCHES=( - "${FILESDIR}"/${PN}-4.6-fno-common.patch - "${FILESDIR}"/${PN}-4.6-Wreserved-user-defined-literal.patch -) - -src_prepare() { - default - - # respect CXXFLAGS (package uses them as CFLAGS) - sed \ - -e "s:^CC.*:CC = $(tc-getCC):" \ - -e "s:^CXX.*:CXX = $(tc-getCXX):" \ - -e "s:\$(OPT):${CXXFLAGS}:" \ - -e "s:^OPT:#OPT:" \ - -e "s:^FLTK = .*$:FLTK = ${EPREFIX}/usr/include/fltk-1:" \ - -e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cflags):" \ - -e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \ - -e "s:^USE_XFT:#USE_XFT:" \ - -e "s:^#HELPFILE:HELPFILE:" \ - -e "s:/usr/share/doc/seaview/seaview.htm:${EPREFIX}/usr/share/seaview/seaview.htm:" \ - -e "s:^#PHYMLNAME:PHYMLNAME:" \ - -e 's:-lXinerama::g' \ - -e 's:-lpng::g' \ - -e 's:-ljpeg::g' \ - -e 's:-lfontconfig::g' \ - -i Makefile || die "sed failed while editing Makefile" - - if use xft; then - sed \ - -e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $($(tc-getPKG_CONFIG) --cflags xft):" \ - -e "s:-lXft:$($(tc-getPKG_CONFIG) --libs xft):" \ - -i Makefile || die "sed failed while editing Makefile to enable xft" - else - sed -i -e "s:-lXft::" Makefile || die - fi -} - -src_install() { - dobin seaview - - # /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile - insinto /usr/share/seaview - doins example.nxs seaview.html - - insinto /usr/share/seaview/images - doins seaview.xpm - - make_desktop_entry seaview Seaview - - doman seaview.1 -} diff --git a/sci-biology/seaview/seaview-4.6-r2.ebuild b/sci-biology/seaview/seaview-4.6-r2.ebuild new file mode 100644 index 000000000000..d02cb1b027e6 --- /dev/null +++ b/sci-biology/seaview/seaview-4.6-r2.ebuild @@ -0,0 +1,82 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit desktop toolchain-funcs + +DESCRIPTION="A graphical multiple sequence alignment editor" +HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" +SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz" + +LICENSE="public-domain" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="+xft" + +RDEPEND=" + sci-biology/clustalw:2 + sci-biology/phyml + || ( + sci-libs/libmuscle + sci-biology/muscle + ) + sys-libs/zlib + x11-libs/fltk:1=[xft(+)?] + x11-libs/libX11 + xft? ( x11-libs/libXft )" +DEPEND="${RDEPEND}" +BDEPEND="virtual/pkgconfig" + +S="${WORKDIR}/${PN}" +PATCHES=( + "${FILESDIR}"/${PN}-4.6-fno-common.patch + "${FILESDIR}"/${PN}-4.6-Wreserved-user-defined-literal.patch +) + +src_prepare() { + default + + # respect CXXFLAGS (package uses them as CFLAGS) + sed \ + -e "s:^CC.*:CC = $(tc-getCC):" \ + -e "s:^CXX.*:CXX = $(tc-getCXX):" \ + -e "s:\$(OPT):${CXXFLAGS}:" \ + -e "s:^OPT:#OPT:" \ + -e "s:^FLTK = .*$:FLTK = ${EPREFIX}/usr/include/fltk-1:" \ + -e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cflags):" \ + -e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \ + -e "s:^USE_XFT:#USE_XFT:" \ + -e "s:^#HELPFILE:HELPFILE:" \ + -e "s:/usr/share/doc/seaview/seaview.htm:${EPREFIX}/usr/share/seaview/seaview.htm:" \ + -e "s:^#PHYMLNAME:PHYMLNAME:" \ + -e 's:-lXinerama::g' \ + -e 's:-lpng::g' \ + -e 's:-ljpeg::g' \ + -e 's:-lfontconfig::g' \ + -i Makefile || die "sed failed while editing Makefile" + + if use xft; then + sed \ + -e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $($(tc-getPKG_CONFIG) --cflags xft):" \ + -e "s:-lXft:$($(tc-getPKG_CONFIG) --libs xft):" \ + -i Makefile || die "sed failed while editing Makefile to enable xft" + else + sed -i -e "s:-lXft::" Makefile || die + fi +} + +src_install() { + dobin seaview + + # /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile + insinto /usr/share/seaview + doins example.nxs seaview.html + + insinto /usr/share/seaview/images + doins seaview.xpm + + make_desktop_entry seaview Seaview + + doman seaview.1 +} -- cgit v1.2.3