From 4f2d7949f03e1c198bc888f2d05f421d35c57e21 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Mon, 9 Oct 2017 18:53:29 +0100
Subject: reinit the tree, so we can have metadata

---
 sci-biology/sibsim4/Manifest            |  5 +++++
 sci-biology/sibsim4/metadata.xml        | 11 +++++++++++
 sci-biology/sibsim4/sibsim4-0.20.ebuild | 35 +++++++++++++++++++++++++++++++++
 3 files changed, 51 insertions(+)
 create mode 100644 sci-biology/sibsim4/Manifest
 create mode 100644 sci-biology/sibsim4/metadata.xml
 create mode 100644 sci-biology/sibsim4/sibsim4-0.20.ebuild

(limited to 'sci-biology/sibsim4')

diff --git a/sci-biology/sibsim4/Manifest b/sci-biology/sibsim4/Manifest
new file mode 100644
index 000000000000..5245b963984d
--- /dev/null
+++ b/sci-biology/sibsim4/Manifest
@@ -0,0 +1,5 @@
+DIST SIBsim4-0.20.tar.gz 32118 SHA256 ee02ae5f678d6843cf3ba267140dfccf9648a60d1f01263ae70d405723a35463 SHA512 3802520095e83d3c691804b661696095a4198c4b2a16385c55ccdc8e4e836f82cc9c2251a5d37cb5918c2ee80aeb81737d751e6b065fbfe9c64f1aee3e0ea0c8 WHIRLPOOL b6117192170a7c8b6bcc441c8b31b392410116d25045203ce33e5274a0a65608de408626df5a29fddbbbe34973869b055603defd58d06cbc6240925556b63282
+EBUILD sibsim4-0.20.ebuild 639 SHA256 395e41c62f5f6c5b37c030e277f208f515cf838257783e3cd57f51e4e8ce9a38 SHA512 ef670faca5998f05252622a170e9faa3748b55a10af9a0556a49ef912cdd2e1d985100001846033da0708479112321557a34fb20ccb1b3e82149a79b2da92195 WHIRLPOOL 49c1e3f87ad11eb093945a1de14ad7718ae027f25aed6fb9647f687e273e0e64f3a77eba27171755bb9ea677c395dd9ca16a157ab63be2ab331ec92d0c30157f
+MISC ChangeLog 2428 SHA256 11641bf63c21a992118ec72fee3a36fb58a30f45278e20628669e6ef6c47c4c1 SHA512 135e53902c39bcca6455577a225cfbe7314e89b37a9b53b1042f7d0e69ba8c7fdb14d083d97eed67ef8bc5324a51e70a98fe9f0ba069147ec15ca86756997f27 WHIRLPOOL 79c3530e4faeb251824bb1ef0428c4314b57b3828a558e3daa9bcce61a92d97e9dea148891477c356d473bb711f1839215a32dd11687a8005b326e0b2d8dd287
+MISC ChangeLog-2015 1077 SHA256 21794dd8153ff64ed6c4f7a4bfe62341008b891272e58dfbc3c7557912882af0 SHA512 df27a124758be1a2eae4f599955190aa19af76f5d66acc3c6a55001b6e6191b35923b15e819e690888713956e4989090a37f22097b740accb4431ecfcf5d34c2 WHIRLPOOL 938b2fff3d2775393ac4d7bd610cc00083e2f5879aedca081e1def10ef335957de548f2af2605ce592e13af9bb42fcb169833f671eda615d582a44a2ad6bf0ae
+MISC metadata.xml 348 SHA256 774d5e527cccd9a5739047115b9a6fdc2d75c98a6a209bab6509c0453d97bc81 SHA512 9628452f960b9837192126173a46e916bfa1f16421a470166ce3812d7e8d455a2f8eb5ba78ccb6f52e5d0acbbc009f31f0eabd5619bc864790c258220333aba0 WHIRLPOOL 55a780440a68708361153b73650a514a3b27073112b7425239812a963df11ec9379d96bcb48bb386e4cbbf16027946f51eb138f5a395f06f9907734681ce07a4
diff --git a/sci-biology/sibsim4/metadata.xml b/sci-biology/sibsim4/metadata.xml
new file mode 100644
index 000000000000..9445a4950bc0
--- /dev/null
+++ b/sci-biology/sibsim4/metadata.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+  <upstream>
+    <remote-id type="sourceforge">sibsim4</remote-id>
+  </upstream>
+</pkgmetadata>
diff --git a/sci-biology/sibsim4/sibsim4-0.20.ebuild b/sci-biology/sibsim4/sibsim4-0.20.ebuild
new file mode 100644
index 000000000000..bf431c666920
--- /dev/null
+++ b/sci-biology/sibsim4/sibsim4-0.20.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+inherit toolchain-funcs
+
+DESCRIPTION="A rewrite and improvement upon sim4, a DNA-mRNA aligner"
+HOMEPAGE="http://sibsim4.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/SIBsim4-${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="amd64 x86"
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/SIBsim4-${PV}"
+
+src_prepare() {
+	sed \
+		-e 's/CFLAGS = /CFLAGS +=/' \
+		-e '/^CC/s:=:?=:' \
+		-e '/^OPT/d' \
+		-e "s:-o:${LDFLAGS} -o:g" \
+		-i "${S}/Makefile" || die
+	tc-export CC
+}
+
+src_install() {
+	dobin SIBsim4
+	doman SIBsim4.1
+}
-- 
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