From 2719f73b6813d11d13a9650cdd2ab8ec6e69385d Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sat, 9 Jul 2022 15:43:36 +0100 Subject: gentoo resync : 09.07.2022 --- sci-biology/transfac/Manifest | 2 +- sci-biology/transfac/transfac-3.2-r1.ebuild | 43 ----------------------------- sci-biology/transfac/transfac-3.2-r2.ebuild | 42 ++++++++++++++++++++++++++++ 3 files changed, 43 insertions(+), 44 deletions(-) delete mode 100644 sci-biology/transfac/transfac-3.2-r1.ebuild create mode 100644 sci-biology/transfac/transfac-3.2-r2.ebuild (limited to 'sci-biology/transfac') diff --git a/sci-biology/transfac/Manifest b/sci-biology/transfac/Manifest index c4eeebdb8540..7f05368bd6ca 100644 --- a/sci-biology/transfac/Manifest +++ b/sci-biology/transfac/Manifest @@ -1,3 +1,3 @@ DIST transfac32.tar.Z 3346266 BLAKE2B 3bd6cfacd7e4ea75946dce5e77bae84a7d199daa84750fe21cd3c393fa66cdf09518a4043ac15f2fbe7bc19f001482e14b65743f1a89aec34bcb28409277370e SHA512 d7004f90e57fa2b8839714e50b9ce1f67357db404adc1a5caddd1e9b86c8e3e9f4e85bbda15c4d6afed85da82ae8615f63260f9a3df9cfd79897d38896893b9f -EBUILD transfac-3.2-r1.ebuild 999 BLAKE2B 58cbaa6a935993519549d6dfe768fa5f5a5a8eaf70ce0d42e03d3dcc72a25067a81f8b695a0a001f8c698f7132cda44a1761a975a081409a6edd8f8feae986b1 SHA512 7b3680b0fa6887ea1214f7f90e5bd979f8111f995e037fd0eb7ec8d129117bb5721c2aa185301ad0b57c2f83d2abf4bdc2d478be726d54ddd0d09ab8c969dc80 +EBUILD transfac-3.2-r2.ebuild 1002 BLAKE2B 1fbb9b280ffe7afdf5809a312ba1ea8944b2ca16a57d3c3a74593c41e0ef3e8f826e139dd3a40c684634f56f2eff2569dcfca52a6e7b5f00f42d20c56435e59a SHA512 131b794d586366ca5441e364087a413d72cb8c66d550bf13cca522fa2c1851a47064064c9d22870b627931ec46778fb1a03309fe39843b9b3d518507ed423c75 MISC metadata.xml 697 BLAKE2B cfcb8ec7dfc62e50cbec8a92bb511e39577203ca2743a6e9b845a257553428cfb0ef4b5793309c59dae581e0faa58f077a19aee9c8036dc16dccaf01dddeb32a SHA512 0cf54f59885bff6391873c4db379f321c08e0357e24335fe18debcb52c6126ba44feb03fb3a1edd7731460395601b3eaa4e9a79f7faca2f018892831672c0587 diff --git a/sci-biology/transfac/transfac-3.2-r1.ebuild b/sci-biology/transfac/transfac-3.2-r1.ebuild deleted file mode 100644 index 91b16f4b4fe4..000000000000 --- a/sci-biology/transfac/transfac-3.2-r1.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -DESCRIPTION="A database of eucaryotic transcription factors" -HOMEPAGE="http://www.gene-regulation.com/pub/databases.html" -SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}32.tar.Z" - -LICENSE="public-domain" -SLOT="3" -# Minimal build keeps only the indexed files (if applicable) and the documentation. -# The non-indexed database is not installed. -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="emboss minimal" - -DEPEND="emboss? ( sci-biology/emboss )" -RDEPEND="${DEPEND}" - -S=${WORKDIR} - -src_compile() { - if use emboss; then - einfo - einfo "Indexing TRANSFAC for usage with EMBOSS" - EMBOSS_DATA="." tfextract -auto -infile class.dat || die "Indexing TRANSFAC failed" - einfo - fi -} - -src_install() { - newdoc readme.txt README - - if ! use minimal; then - insinto /usr/share/${PN}-${SLOT} - doins *.dat - fi - - if use emboss; then - insinto /usr/share/EMBOSS/data - doins tf* - fi -} diff --git a/sci-biology/transfac/transfac-3.2-r2.ebuild b/sci-biology/transfac/transfac-3.2-r2.ebuild new file mode 100644 index 000000000000..2fce474da2ad --- /dev/null +++ b/sci-biology/transfac/transfac-3.2-r2.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DESCRIPTION="A database of eucaryotic transcription factors" +HOMEPAGE="http://www.gene-regulation.com/pub/databases.html" +SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}32.tar.Z" +S="${WORKDIR}" + +LICENSE="public-domain" +SLOT="3" +# Minimal build keeps only the indexed files (if applicable) and the documentation. +# The non-indexed database is not installed. +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="emboss minimal" + +BDEPEND="emboss? ( sci-biology/emboss )" +RDEPEND="${BDEPEND}" + +src_compile() { + if use emboss; then + einfo + einfo "Indexing TRANSFAC for usage with EMBOSS" + EMBOSS_DATA="." tfextract -auto -infile class.dat || die "Indexing TRANSFAC failed" + einfo + fi +} + +src_install() { + newdoc readme.txt README + + if ! use minimal; then + insinto /usr/share/transfac-${SLOT} + doins *.dat + fi + + if use emboss; then + insinto /usr/share/EMBOSS/data + doins tf* + fi +} -- cgit v1.2.3