From 4f2d7949f03e1c198bc888f2d05f421d35c57e21 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Mon, 9 Oct 2017 18:53:29 +0100
Subject: reinit the tree, so we can have metadata

---
 sci-biology/transfac/Manifest               |  5 ++++
 sci-biology/transfac/metadata.xml           | 16 +++++++++++
 sci-biology/transfac/transfac-3.2-r1.ebuild | 43 +++++++++++++++++++++++++++++
 3 files changed, 64 insertions(+)
 create mode 100644 sci-biology/transfac/Manifest
 create mode 100644 sci-biology/transfac/metadata.xml
 create mode 100644 sci-biology/transfac/transfac-3.2-r1.ebuild

(limited to 'sci-biology/transfac')

diff --git a/sci-biology/transfac/Manifest b/sci-biology/transfac/Manifest
new file mode 100644
index 000000000000..4e3f2a1a7606
--- /dev/null
+++ b/sci-biology/transfac/Manifest
@@ -0,0 +1,5 @@
+DIST transfac32.tar.Z 3346266 SHA256 cf5c64e6f23037d73562d66f9dde56a767a8f31974a1c0906ec68edea3731a7f SHA512 d7004f90e57fa2b8839714e50b9ce1f67357db404adc1a5caddd1e9b86c8e3e9f4e85bbda15c4d6afed85da82ae8615f63260f9a3df9cfd79897d38896893b9f WHIRLPOOL c96ce40f5deb4e411ac754904bbd0a34636a21cab919efb10395547b381d2af71083c84d83f2fec12328b42f2c1e5e030eb3c9c66c73631429d5f81f48acf9e5
+EBUILD transfac-3.2-r1.ebuild 999 SHA256 8234a4464754bc43c038ead418adca13c70f9d95b89e7cf36b7d2c722e38b631 SHA512 7b3680b0fa6887ea1214f7f90e5bd979f8111f995e037fd0eb7ec8d129117bb5721c2aa185301ad0b57c2f83d2abf4bdc2d478be726d54ddd0d09ab8c969dc80 WHIRLPOOL 15a93c1f19ced586d587ea7ef33a9f937faefa978eeec8528de3d28792c89f37be1ce5dc685e454ed26296282313f8b3c05b2f79abeaea153c5f8e7ac41c026d
+MISC ChangeLog 2429 SHA256 ebde02d5b9d5b4b31e4edf56ad5b0ff00afa8a216f776b973739e648d2611c2e SHA512 5f9c64432cce206739501dbe7c2564f9db6c53099ec99fa93ed7aa6e09140824c70b63229e0fa54abfa884a8b0971a54bbac284f910404d84d9037bf2a265a4e WHIRLPOOL b40e770039c35e51a9c273e2564952af651239dbb56af30bd09781b588ac6ec3253e4010d5d2bab435c2a59db6da1818817fc0050fab163d438564c41823e673
+MISC ChangeLog-2015 2317 SHA256 4975078ba982076d639c909d799f0220d7d800c5b24a491f181ab443b2f2a13a SHA512 0a6ad259808c1cadd7fb2b6045422776881738da851f61ad98c65a958c75002daef7f898c9628836ea75144a873dc4b91e96e71f4d1ccc012b4b73a9e9331e74 WHIRLPOOL 2a5d0e3ef8245216854c8ffec6007f499610039aa37803bd5fc1ac79f89e419af641b5e522966ea4758838d5d787493351eeddaf01ae1b3be5ea4d952c7c8ada
+MISC metadata.xml 696 SHA256 b2775254abb111a223173f6834b77d035e84a791bd8b948a21002681c3ab324d SHA512 22cb9c39a7dbd3830cc64082657d8ab0b04b217f3540c912c1f06256e45a285ae9fa56a334ed5ccda2c58fa4a9407977c8f26906cb3e7000e3a69270dded6159 WHIRLPOOL 99dc591db6a468c7e7f45c2d2f835fdaa3f2bef0f359f35facf648b8e77dcda627181f1787a90a5018f6fd9632d80dd8ef4eeefa8232384252932f62b4f4a384
diff --git a/sci-biology/transfac/metadata.xml b/sci-biology/transfac/metadata.xml
new file mode 100644
index 000000000000..a8cecf4529c2
--- /dev/null
+++ b/sci-biology/transfac/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+	<longdescription>
+		TRANSFAC® is a database of eukaryotic transcription factors, of their
+		genomic binding sites and DNA-binding profiles. TRANSFAC 3.2 is an old
+		public version available at the European Bioinformatics Institute.
+		TRANSFAC® is currently maintained by the BIOBASE company. Altough they
+		offer public access to a more recent version of the database, they
+		offer no free downloadable version.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/transfac/transfac-3.2-r1.ebuild b/sci-biology/transfac/transfac-3.2-r1.ebuild
new file mode 100644
index 000000000000..91b16f4b4fe4
--- /dev/null
+++ b/sci-biology/transfac/transfac-3.2-r1.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="A database of eucaryotic transcription factors"
+HOMEPAGE="http://www.gene-regulation.com/pub/databases.html"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}32.tar.Z"
+
+LICENSE="public-domain"
+SLOT="3"
+# Minimal build keeps only the indexed files (if applicable) and the documentation.
+# The non-indexed database is not installed.
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="emboss minimal"
+
+DEPEND="emboss? ( sci-biology/emboss )"
+RDEPEND="${DEPEND}"
+
+S=${WORKDIR}
+
+src_compile() {
+	if use emboss; then
+		einfo
+		einfo "Indexing TRANSFAC for usage with EMBOSS"
+		EMBOSS_DATA="." tfextract -auto -infile class.dat || die "Indexing TRANSFAC failed"
+		einfo
+	fi
+}
+
+src_install() {
+	newdoc readme.txt README
+
+	if ! use minimal; then
+		insinto /usr/share/${PN}-${SLOT}
+		doins *.dat
+	fi
+
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data
+		doins tf*
+	fi
+}
-- 
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