From e91a1aaa5ec8fab37f0fd082ac6024d41c6651e2 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Sat, 7 Apr 2018 13:16:39 +0100
Subject: gentoo resync : 07.04.2018

---
 sci-biology/Manifest.gz                | Bin 25454 -> 25455 bytes
 sci-biology/qrna/Manifest              |   2 +-
 sci-biology/qrna/qrna-2.0.3c-r2.ebuild |  58 ---------------------------------
 sci-biology/qrna/qrna-2.0.3c-r3.ebuild |  58 +++++++++++++++++++++++++++++++++
 4 files changed, 59 insertions(+), 59 deletions(-)
 delete mode 100644 sci-biology/qrna/qrna-2.0.3c-r2.ebuild
 create mode 100644 sci-biology/qrna/qrna-2.0.3c-r3.ebuild

(limited to 'sci-biology')

diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index 37e662608946..625d4d8a2ee3 100644
Binary files a/sci-biology/Manifest.gz and b/sci-biology/Manifest.gz differ
diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest
index 2c08f3038817..fc5186011f1b 100644
--- a/sci-biology/qrna/Manifest
+++ b/sci-biology/qrna/Manifest
@@ -2,5 +2,5 @@ AUX 26qrna 30 BLAKE2B 07faad9f2143edab789c29f999182e76a87ae82b9e6fca3346fc6391f7
 AUX qrna-2.0.3c-glibc-2.10.patch 7571 BLAKE2B 3361fa6c31af0fa7f01e3c32bce2a8570df69b06517f9eb46a2f4f249acc972ac15da4fa5b9c1211efeaa91ee7d41f5c5e2392d89ead41252b5f5675826d4c21 SHA512 afa8767baadf99dafbb0ce4fa8b31017f6a12e1eadbcbd41a7e04e571d3f059395356178df3ab28f8c03c10f227123361590357c6ace6256727322ade00228e6
 AUX qrna-2.0.3c-ldflags.patch 1368 BLAKE2B b3f5cee42c370545e348e86627981d4568a84a673faf32d041b0ebbce0e782c8cab1aaa41c2c48f43704886035431c64b035a99b98225363f5ca2d0b8b9c0dc2 SHA512 4b1be14c664056eebb914e8c8223686ef0f345c860bd5aca82dced67b9580a205ef9539c563c0b0c646a9781ed0c58c4cec69d71bceb2c410dc485e9b5881c54
 DIST qrna-2.0.3c.tar.bz2 6423705 BLAKE2B 42bb2f03bac4034da9bcdedcd7c09ce7d1892ceb14d5682745d77c7575a84ae1a6a598406895be2a844ceaffee045ec6357ad08cc0d67a1312458d11b6540fda SHA512 98710bcf8993e2c09ec1eb33632a18ac993ab817dc95a865200b0868f79b95ff61f5f7d3f0c1c33de6d26f674025ea11a8c7d8175b96071e4594daa252fa52b5
-EBUILD qrna-2.0.3c-r2.ebuild 1112 BLAKE2B 4a72757056575d7aa9036fa21158393f6eede3c0e1965ab59c04704c725ba10dd037776d6e3c353a9942b1cbd464da182c375289ee6d45a3d5d74fc40d85958b SHA512 70e7e97f322970434fc5ee5abd8b75ae085fb588ea467673e01ede4b4778e819e41df83f9df1fc1d10e6ede9b52d5356519f8c4987d654f4038fbd7c5c90e853
+EBUILD qrna-2.0.3c-r3.ebuild 1114 BLAKE2B 737bf8541a3812727d8d2c8adba527cc259b52fa88ed411c56c91a5783b3bc41d001da59b67ae79f02df48fda79859fae352a00dae452de291f1a7bce93676cf SHA512 008cb677ee7548fbae56f87e0394f135cc89c9811ad598157cb1b2ce2f708a715bb8a9b841b5348ef2647dd4a488905960d0a6448d5c13fcd05be61361c4de37
 MISC metadata.xml 261 BLAKE2B 3768c926bca545090342a947ba83e706a8954c51b99a5e7b3476ba5198cd326fe1c3b8efb51dfd6be1800682556b8ceea065e388981463ab32f3d687951872f3 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a
diff --git a/sci-biology/qrna/qrna-2.0.3c-r2.ebuild b/sci-biology/qrna/qrna-2.0.3c-r2.ebuild
deleted file mode 100644
index ea79f2d548f6..000000000000
--- a/sci-biology/qrna/qrna-2.0.3c-r2.ebuild
+++ /dev/null
@@ -1,58 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit toolchain-funcs
-
-DESCRIPTION="Prototype ncRNA genefinder"
-HOMEPAGE="http://selab.janelia.org/software.html"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
-	dev-lang/perl
-	sci-biology/hmmer"
-DEPEND="${RDEPEND}"
-
-PATCHES=(
-	"${FILESDIR}"/${P}-glibc-2.10.patch
-	"${FILESDIR}"/${P}-ldflags.patch
-)
-
-src_prepare() {
-	default
-	sed \
-		-e "s:^CC.*:CC = $(tc-getCC):" \
-		-e "/^AR/s:ar:$(tc-getAR):g" \
-		-e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
-		-e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
-		-i {src,squid,squid02}/Makefile || die
-	rm -v squid*/*.a || die
-}
-
-src_compile() {
-	local d
-	for d in squid squid02 src; do
-		emake -C ${d}
-	done
-}
-
-src_install() {
-	dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
-
-	newdoc 00README README
-	dodoc -r documentation/.
-
-	insinto /usr/share/${PN}/data
-	doins -r lib/.
-	insinto /usr/share/${PN}/demos
-	doins -r Demos/.
-
-	# Sets the path to the QRNA data files
-	doenvd "${FILESDIR}"/26qrna
-}
diff --git a/sci-biology/qrna/qrna-2.0.3c-r3.ebuild b/sci-biology/qrna/qrna-2.0.3c-r3.ebuild
new file mode 100644
index 000000000000..5c580a24d2a3
--- /dev/null
+++ b/sci-biology/qrna/qrna-2.0.3c-r3.ebuild
@@ -0,0 +1,58 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit toolchain-funcs
+
+DESCRIPTION="Prototype ncRNA genefinder"
+HOMEPAGE="http://selab.janelia.org/software.html"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	dev-lang/perl
+	sci-biology/hmmer:2"
+DEPEND="${RDEPEND}"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-glibc-2.10.patch
+	"${FILESDIR}"/${P}-ldflags.patch
+)
+
+src_prepare() {
+	default
+	sed \
+		-e "s:^CC.*:CC = $(tc-getCC):" \
+		-e "/^AR/s:ar:$(tc-getAR):g" \
+		-e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
+		-e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
+		-i {src,squid,squid02}/Makefile || die
+	rm -v squid*/*.a || die
+}
+
+src_compile() {
+	local d
+	for d in squid squid02 src; do
+		emake -C ${d}
+	done
+}
+
+src_install() {
+	dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
+
+	newdoc 00README README
+	dodoc -r documentation/.
+
+	insinto /usr/share/${PN}/data
+	doins -r lib/.
+	insinto /usr/share/${PN}/demos
+	doins -r Demos/.
+
+	# Sets the path to the QRNA data files
+	doenvd "${FILESDIR}"/26qrna
+}
-- 
cgit v1.2.3