From f9fff8823e0cd1f6570b01337ac99e5bd49c824a Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Mon, 26 Dec 2022 02:06:21 +0000 Subject: gentoo auto-resync : 26:12:2022 - 02:06:21 --- sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild | 37 ---------------------- sci-chemistry/MDAnalysis/MDAnalysis-2.0.0.ebuild | 37 ---------------------- sci-chemistry/MDAnalysis/MDAnalysis-2.4.1.ebuild | 39 ++++++++++++++++++++++++ sci-chemistry/MDAnalysis/Manifest | 6 ++-- 4 files changed, 41 insertions(+), 78 deletions(-) delete mode 100644 sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild delete mode 100644 sci-chemistry/MDAnalysis/MDAnalysis-2.0.0.ebuild create mode 100644 sci-chemistry/MDAnalysis/MDAnalysis-2.4.1.ebuild (limited to 'sci-chemistry/MDAnalysis') diff --git a/sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild b/sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild deleted file mode 100644 index 1f9c2ac3aa5e..000000000000 --- a/sci-chemistry/MDAnalysis/MDAnalysis-1.0.0.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..10} ) - -inherit distutils-r1 - -DESCRIPTION="A python library to analyze and manipulate molecular dynamics trajectories" -HOMEPAGE="https://www.mdanalysis.org" -SRC_URI="mirror://pypi/M/${PN}/${P}.tar.gz" - -SLOT="0" -LICENSE="GPL-2" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="test" - -RDEPEND=" - >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}] - >=dev-python/scipy-1.0.0[${PYTHON_USEDEP}] - >=sci-biology/biopython-1.71[${PYTHON_USEDEP}] - >=dev-python/networkx-1.0[${PYTHON_USEDEP}] - >=dev-python/GridDataFormats-0.4.0[${PYTHON_USEDEP}] - >=dev-python/joblib-0.12[${PYTHON_USEDEP}] - >=dev-python/matplotlib-1.5.1[${PYTHON_USEDEP}] - dev-python/netcdf4-python[${PYTHON_USEDEP}] - >=dev-python/mmtf-python-1.0.0[${PYTHON_USEDEP}] - >=dev-python/gsd-1.9.3[${PYTHON_USEDEP}] - dev-python/mock[${PYTHON_USEDEP}] - dev-python/duecredit[${PYTHON_USEDEP}] - >=dev-python/six-1.4.0[${PYTHON_USEDEP}] - >=dev-python/tqdm-4.43.0[${PYTHON_USEDEP}] -" -BDEPEND="${RDEPEND}" - -distutils_enable_tests nose diff --git a/sci-chemistry/MDAnalysis/MDAnalysis-2.0.0.ebuild b/sci-chemistry/MDAnalysis/MDAnalysis-2.0.0.ebuild deleted file mode 100644 index aee4e82b683e..000000000000 --- a/sci-chemistry/MDAnalysis/MDAnalysis-2.0.0.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{8..10} ) - -inherit distutils-r1 - -DESCRIPTION="A python library to analyze and manipulate molecular dynamics trajectories" -HOMEPAGE="https://www.mdanalysis.org" -SRC_URI="mirror://pypi/M/${PN}/${P}.tar.gz" - -SLOT="0" -LICENSE="GPL-2" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" - -# TODO: fix this -# ImportError: MDAnalysis not installed properly. This can happen if your C extensions have not been built. -RESTRICT="test" - -RDEPEND=" - >=dev-python/numpy-1.16.0[${PYTHON_USEDEP}] - >=dev-python/scipy-1.0.0[${PYTHON_USEDEP}] - >=sci-biology/biopython-1.71[${PYTHON_USEDEP}] - >=dev-python/networkx-1.0[${PYTHON_USEDEP}] - >=dev-python/GridDataFormats-0.4.0[${PYTHON_USEDEP}] - >=dev-python/joblib-0.12[${PYTHON_USEDEP}] - >=dev-python/matplotlib-1.5.1[${PYTHON_USEDEP}] - >=dev-python/mmtf-python-1.0.0[${PYTHON_USEDEP}] - >=dev-python/tqdm-4.43.0[${PYTHON_USEDEP}] - >=dev-python/gsd-1.9.3[${PYTHON_USEDEP}] - dev-python/threadpoolctl[${PYTHON_USEDEP}] -" -BDEPEND="${RDEPEND}" - -distutils_enable_tests nose diff --git a/sci-chemistry/MDAnalysis/MDAnalysis-2.4.1.ebuild b/sci-chemistry/MDAnalysis/MDAnalysis-2.4.1.ebuild new file mode 100644 index 000000000000..5d561772ca51 --- /dev/null +++ b/sci-chemistry/MDAnalysis/MDAnalysis-2.4.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{8..10} ) + +DISTUTILS_USE_PEP517=setuptools + +inherit distutils-r1 + +DESCRIPTION="A python library to analyze and manipulate molecular dynamics trajectories" +HOMEPAGE="https://www.mdanalysis.org" +SRC_URI="mirror://pypi/M/${PN}/${P}.tar.gz" + +SLOT="0" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +# TODO: fix this +# ImportError: MDAnalysis not installed properly. This can happen if your C extensions have not been built. +RESTRICT="test" + +RDEPEND=" + >=dev-python/numpy-1.16.0[${PYTHON_USEDEP}] + >=dev-python/scipy-1.0.0[${PYTHON_USEDEP}] + >=sci-biology/biopython-1.71[${PYTHON_USEDEP}] + >=dev-python/networkx-1.0[${PYTHON_USEDEP}] + >=dev-python/GridDataFormats-0.4.0[${PYTHON_USEDEP}] + >=dev-python/joblib-0.12[${PYTHON_USEDEP}] + >=dev-python/matplotlib-1.5.1[${PYTHON_USEDEP}] + >=dev-python/mmtf-python-1.0.0[${PYTHON_USEDEP}] + >=dev-python/tqdm-4.43.0[${PYTHON_USEDEP}] + >=dev-python/gsd-1.9.3[${PYTHON_USEDEP}] + dev-python/threadpoolctl[${PYTHON_USEDEP}] +" +BDEPEND="${RDEPEND}" + +distutils_enable_tests pytest diff --git a/sci-chemistry/MDAnalysis/Manifest b/sci-chemistry/MDAnalysis/Manifest index 031694c2bcde..b1e1df7f7ab2 100644 --- a/sci-chemistry/MDAnalysis/Manifest +++ b/sci-chemistry/MDAnalysis/Manifest @@ -1,5 +1,3 @@ -DIST MDAnalysis-1.0.0.tar.gz 19552874 BLAKE2B dab625a898d71a67a37ac5b58eb23ded9487f475e3c76f6c335a0ed5b32a43785d0473d089fcfc56c07263d82248bf5ee7b50c513441b10fc97f97b49411cc5f SHA512 4a001f45695308dd5f296bd2850d5d585c065e6b0f55efca65d91e452d78c85f13fd614eca0176a8d330e14a1c9e8ccbb919c3d4ae995b1945d09dc3ad687195 -DIST MDAnalysis-2.0.0.tar.gz 3436654 BLAKE2B b29734dd61bfa1e4e1d6ead0eb9a2d00869d1adce18edf95b9368bdcc16b0d71d0d6536a7df48787034a623bf52585e1636842dcaaa9dde08a69576868c1657b SHA512 037eb3c709b9ddbdb2ba9b26a6632ff99a95331c3968176573076e4e208c8644c3ea262e1e9880f185eb080ff90180d887444cab0dfbfad04fc254d87f1ff986 -EBUILD MDAnalysis-1.0.0.ebuild 1116 BLAKE2B d0fb4a3e4aa269fa30fe3168f7611a4296c87c12d3d8dd5b5b78282d756d4d8156d53395b453ad4c24925e45547aba832afc233183f01bac4bbf57d65131f1d0 SHA512 a116ec2dfcb9256b2b6d63d67c068e0a138de788d0d5aecc60e3844058ac54cb49e34e6a79c2488b76aa447be127f5dcb9403396341a0045448eef47c94bab01 -EBUILD MDAnalysis-2.0.0.ebuild 1128 BLAKE2B e51e404e7254e614abab6856948939b5673d13940cf60d5e6dc77d08e97a401d4af00e56cf90ed9bbfca0acd319f9d328a4479c222fc5ccc0a5ddb8e41788f56 SHA512 6029cd5e527333da9aa7cb52560436eaa7424a87a3c22499f6aeb99b402525dd87a43ae7487a669df67890942f7bfd4d6d561366d002e2c0138e3f2e35f02601 +DIST MDAnalysis-2.4.1.tar.gz 3746899 BLAKE2B af63f74a31dcde8a68cbffe5158f2f955d5eda1345bcff6a19e8df3284101b1e85006de3326d29d4fe1867dc6b0c5f55467b9e3242704f97440c6a43b52f47b8 SHA512 796dad98c26bd36f30db166bea5ff782aa5e3ac5cddb1675b628fb753a4f645fb27e06d3986047e2ba21a22cd91f96d0ba8e529256ed960a2b7cf95204076927 +EBUILD MDAnalysis-2.4.1.ebuild 1163 BLAKE2B bf2a74ade27b4e40c8de581beb3af31933104ab05b5978235d2b1b8ff9bbd12cfe3ec471975df9bdf4fb1704edef300005cf01e66b994c5ccda95f7c046d2bf8 SHA512 c675a42b4b3a7e7e49d2338601beaf259f1f84fd23af06833f373c1cd1e4583a7a4206ed313fa56bdbaeb2899b513c1d7ce090c2bf9c34357ca95c59b868b60f MISC metadata.xml 497 BLAKE2B ddd8c6379dfe6b6fe33160d31bda254774e0c8eb5f862cc51560097efc5c273fa972388c6fe8fb1bbedc11ab125a5487bb1d19002489be967fa3e8e209d7cc81 SHA512 03c1eb9bef1bc10d600169b221c65c87794f8b9bf8d0efb1dc6ddaa61a09d665722ed7d32087e3137b36aa7256b76371b9ce2cc92b34b1ed7d1c78ede6550287 -- cgit v1.2.3