From e68d405c5d712af4387159df07e226217bdda049 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Wed, 6 Apr 2022 22:33:41 +0100 Subject: gentoo resync : 06.04.2022 --- sci-chemistry/mm-align/metadata.xml | 26 -------------------------- 1 file changed, 26 deletions(-) delete mode 100644 sci-chemistry/mm-align/metadata.xml (limited to 'sci-chemistry/mm-align/metadata.xml') diff --git a/sci-chemistry/mm-align/metadata.xml b/sci-chemistry/mm-align/metadata.xml deleted file mode 100644 index 03c48e987ffb..000000000000 --- a/sci-chemistry/mm-align/metadata.xml +++ /dev/null @@ -1,26 +0,0 @@ - - - - - sci-chemistry@gentoo.org - Gentoo Chemistry Project - - -MM-align is an algorithm for structurally aligning multiple-chain -protein-protein complexes. The algorithm is built on a heuristic -iteration of a modified Needleman-Wunsch dynamic programming (DP) -algorithm, with the alignment score specified by the inter-complex residue -distances. The multiple chains in each complex are first joined, in every -possible order, and then simultaneously aligned with cross-chain alignments -prevented. The alignments of interface residues are enhanced by an -interface-specific weighting factor. An optimal alignment between two complexes, -as well as the overall TM-score, will be reported for each comparison. -What is the difference between TM-align and MM-align? TM-align is for aligning -monomer protein structures while MM-align is designed for aligning -multiple-chain protein complex structures. Although one can still use TM-align -to align protein complexes after manually joining the chains, this will lead -to suboptimal alignments with unphysical cross alignments. Therefore, the -best result will be obtained if one uses TM-align to monomer structures and -MM-align for multimer structures. - - -- cgit v1.2.3