From cb3e8c6af7661fbcafdcacc7e0ecdfb610d098fa Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sat, 9 Jun 2018 09:27:03 +0100 Subject: gentoo resync : 09.06.2018 --- sci-chemistry/modeller/Manifest | 3 + sci-chemistry/modeller/metadata.xml | 8 ++ sci-chemistry/modeller/modeller-9.20.ebuild | 145 ++++++++++++++++++++++++++++ 3 files changed, 156 insertions(+) create mode 100644 sci-chemistry/modeller/Manifest create mode 100644 sci-chemistry/modeller/metadata.xml create mode 100644 sci-chemistry/modeller/modeller-9.20.ebuild (limited to 'sci-chemistry/modeller') diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest new file mode 100644 index 000000000000..1c4122663ce1 --- /dev/null +++ b/sci-chemistry/modeller/Manifest @@ -0,0 +1,3 @@ +DIST modeller-9.20.tar.gz 34909796 BLAKE2B d89c81823c4d7784a7b3d64fdb01158a973edc7d8b316c773e038ba8645797c543d5bc58c1bff5462ae5975a6c2796f4b2d500641d226c3b2281cf794cfeba8d SHA512 667edeeda0a9038258f6932b3cef22a1e9d0fe47f47bd2ac612e7bac7f23a863f5a65cfd93abfa405310e7fb7b305d53e71d6c6e930613b0dbd43b24dcd5919a +EBUILD modeller-9.20.ebuild 3692 BLAKE2B b5980772f4916b2eb66b09be0480331bcc0d2c608d9ac96af0c414ecd00806e2c8ab8fbb9bd190466abcc79b5e4f3137e24263de6c48588bdd7d120c63de11eb SHA512 c3ba77e370565394cad2df714b94ae8c39633ca5e0a29e9bdecd5a4e17d331604d6aafe78771ea6de08e39aa0af9712f6b6a73bdeb01d862706646f2fafa8b4b +MISC metadata.xml 265 BLAKE2B d5a98b9309829a0486c4b8a4336c2d24a0fe34e926d52afd0cc87e16fcc887ca4c18851e58afb33866823121fa8f221a90e0d726dbd85552a4caf66cf03b7b4a SHA512 470f6c178e88c4e83afa46d5e901a45fc2427a779ae832df7fa2d6e25e9e8b4ce77cd3a8fe191e6242d6df3b673f0de6b4f90f1e147aa8b8dd566f18163cc73a diff --git a/sci-chemistry/modeller/metadata.xml b/sci-chemistry/modeller/metadata.xml new file mode 100644 index 000000000000..da36ecbfcd6a --- /dev/null +++ b/sci-chemistry/modeller/metadata.xml @@ -0,0 +1,8 @@ + + + + + sci-chemistry@gentoo.org + Gentoo Chemistry Project + + diff --git a/sci-chemistry/modeller/modeller-9.20.ebuild b/sci-chemistry/modeller/modeller-9.20.ebuild new file mode 100644 index 000000000000..0d29c3843f29 --- /dev/null +++ b/sci-chemistry/modeller/modeller-9.20.ebuild @@ -0,0 +1,145 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 eutils multilib versionator + +DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures" +HOMEPAGE="http://salilab.org/modeller/" +SRC_URI="http://salilab.org/${PN}/${PV}/${P}.tar.gz" + +LICENSE="modeller" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples" +SLOT="0" + +RESTRICT="mirror" + +DEPEND=">=dev-lang/swig-1.3" +RDEPEND="" + +INPATH="${EPREFIX}"/opt/modeller${ver} + +QA_PREBUILT="/opt/*" + +pkg_setup() { + case ${ARCH} in + x86) + EXECTYPE="i386-intel8";; + amd64) + EXECTYPE="x86_64-intel8";; + *) + die "Your arch "${ARCH}" does not appear supported at this time.";; + esac +} + +python_prepare_all(){ + sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die + distutils-r1_python_prepare_all +} + +python_compile(){ + cd src/swig || die + swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die + distutils-r1_python_compile +} + +python_install() { + cd src/swig || die + distutils-r1_python_install +} + +python_install_all(){ + cd "${S}" || die + sed \ + -e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \ + -e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \ + -i bin/modscript || die + + sed -e "s;@TOPDIR\@;\"${INPATH}\";" \ + -e "s;@EXETYPE\@;${EXECTYPE};" \ + bin/modpy.sh.in > "${T}/modpy.sh" + + insinto ${INPATH} + doins -r modlib + python_foreach_impl python_domodule modlib/modeller + + insinto ${INPATH}/bin + doins -r bin/{lib,*top} + + exeinto ${INPATH}/bin + doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh + + python_foreach_impl python_doscript bin/modslave.py + dosym ${INPATH}/bin/modscript /opt/bin/mod${PV} + dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh + + exeinto ${INPATH}/lib/${EXECTYPE}/ + doexe lib/${EXECTYPE}/lib* + dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so + dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.8 /usr/$(get_libdir)/libmodeller.so.8 + + use doc && HTML_DOCS=( doc/. ) + distutils-r1_python_install_all + + if use examples; then + insinto /usr/share/${PN}/ + doins -r examples + fi + + insinto /etc/revdep-rebuild + cat >> "${T}"/40-${PN} <<- EOF + SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/" + EOF + doins "${T}"/40-${PN} +} + +pkg_postinst() { + if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then + echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py + fi + + if grep -q license ${INPATH}/modlib/modeller/config.py; then + einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py" + else + ewarn "Obtain a license Key from" + ewarn "http://salilab.org/modeller/registration.html" + ewarn "And run this before using modeller:" + ewarn "emerge --config =${CATEGORY}/${PF}" + ewarn "That way you can [re]enter your license key." + fi +} + +pkg_postrm() { + ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py" + ewarn "that you need to remove to completely get rid of modeller." +} + +pkg_config() { + ewarn "Your license key is NOT checked for validity here." + ewarn " Make sure you type it in correctly." + eerror "If you CTRL+C out of this, modeller will not run!" + while true + do + einfo "Please enter your license key:" + read license_key1 + einfo "Please re-enter your license key:" + read license_key2 + if [[ "$license_key1" == "" ]] + then + echo "You entered a blank license key. Try again." + else + if [[ "$license_key1" == "$license_key2" ]] + then + echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py" + einfo "Thank you!" + break + else + eerror "Your license key entries do not match. Try again." + fi + fi + done +} -- cgit v1.2.3