From 7c334a9594ae315e537bf98259b95bafc60d479c Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@koprulu.sector>
Date: Fri, 21 Jul 2023 10:04:00 +0100
Subject: gentoo auto-resync : 21:07:2023 - 10:04:00

---
 sci-chemistry/Manifest.gz            | Bin 9508 -> 9506 bytes
 sci-chemistry/dssp/Manifest          |   4 +--
 sci-chemistry/dssp/dssp-4.4.0.ebuild |  39 -------------------------
 sci-chemistry/dssp/dssp-4.4.1.ebuild |  54 +++++++++++++++++++++++++++++++++++
 4 files changed, 56 insertions(+), 41 deletions(-)
 delete mode 100644 sci-chemistry/dssp/dssp-4.4.0.ebuild
 create mode 100644 sci-chemistry/dssp/dssp-4.4.1.ebuild

(limited to 'sci-chemistry')

diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz
index 34c9f044e402..66b99416e873 100644
Binary files a/sci-chemistry/Manifest.gz and b/sci-chemistry/Manifest.gz differ
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
index 0a4268c4203e..03d40e3b6d27 100644
--- a/sci-chemistry/dssp/Manifest
+++ b/sci-chemistry/dssp/Manifest
@@ -4,9 +4,9 @@ AUX dssp-2.2.1-boost-1.65-tr1-removal.patch 2126 BLAKE2B dc59d21a6be26ee96b636c1
 DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811
 DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d
 DIST dssp-4.3.1.tar.gz 226842 BLAKE2B 86318f05b8381d94fa9c65a956f5fb607ef8072b0395d912e20697ba36836c449ddff31a4a64d0005bbfe34899f71853c0f15a911042389fc894934c08fc34c8 SHA512 4dc1a3f5c7ba258ebf548674c7b33c36b0e3a7d14911394eb8d2955c235f3cb1d6c50cb03f411db55a8a9d7aa93e4d03354c47f9f0126b0bdcbf40dc9391d403
-DIST dssp-4.4.0.tar.gz 161773 BLAKE2B 87673be73f3163ba6fa090cc7acd4f864d41922033da9d126535b84e2da4defaaa8781a8cda6e80103dc75359718cd867b9baf90c74ae3ff923e212b520998a2 SHA512 1b09306c05587c278fcd881e0d3c169d44d960d8578f310adbd79b054683c257d0ee00d6bdfb5b0d7cd81c224f3572c2c7538a42d964817d587632128b96daa9
+DIST dssp-4.4.1.tar.gz 161797 BLAKE2B d6bfb40a730f39e9d5a0988ce22a9dd377ec08a09e29f77e5afaac26d512cf87f6e289c1e4e3e63cfef7354b10fb57bf410bcc169604b1b6a6078380e4f08d26 SHA512 1bcf9e16efc5d3a7de11e24ed63e47d3263123af4670b8f3daa97cdf7cc33202fb4d564acac3024ed4edcce1ef8278f71f5312f27a234d2957afa6f563c88ed6
 EBUILD dssp-2.2.1-r3.ebuild 870 BLAKE2B 9b7542d9ec45b60f5671830e5068e1d1cbcca4b82cf22cc0e2d9804c221f9977cfade439cc6e41a67375b438faca3ffa64fdec23db2b417b58615513fd60ad44 SHA512 964bfd70d98a80e6afd7f28fc6bf7359bbde105e77903211cec04c5adcdce273f1d7142a6d206d644300a1185cba1352bf584499d864809dadad69b2023e50d0
 EBUILD dssp-3.0.11.ebuild 875 BLAKE2B 6344416239b93804755b1829dcfcb9e8e461606c217938945bb2fc75e9680f2849b39bdbf0ed361592e703fea493a2dacabca498b26e696c969735a585e5d183 SHA512 353f4f5d7b1b195753c738ecc9fb17b429cdeada757806f5cf9a3da65c6318e3885d2c92fa904d5b3a546756eb87ec90787d158e8a9450b4730dd97b45af970d
 EBUILD dssp-4.3.1.ebuild 900 BLAKE2B d99a9024e58e5b2c53cbbfebb662a3fc546dd2a7b16a31394b312a2320bde8df9b62ecdef82295d924141e8427aee56a1e7277132e7767f481041dde6fd7c292 SHA512 1ac6d76fc9c37d5af8eecede2225d86517d27cd96a65ea4a6c9f1ce45eaf2e48fe0772838154639eebdbbccde3dd92bc6f5c9f8b2c37e3c9ca158534e5f8b8fc
-EBUILD dssp-4.4.0.ebuild 900 BLAKE2B d99a9024e58e5b2c53cbbfebb662a3fc546dd2a7b16a31394b312a2320bde8df9b62ecdef82295d924141e8427aee56a1e7277132e7767f481041dde6fd7c292 SHA512 1ac6d76fc9c37d5af8eecede2225d86517d27cd96a65ea4a6c9f1ce45eaf2e48fe0772838154639eebdbbccde3dd92bc6f5c9f8b2c37e3c9ca158534e5f8b8fc
+EBUILD dssp-4.4.1.ebuild 1327 BLAKE2B 1e84f9fb6e0fa6bf81a3381cd433b7ddcb0e298b5c34f6a8d3007b0a34583e4ea3037b3b1881dab20cb4b0c7c2c9b5e2addca4dd47fa39dba9b992f4c3e140ab SHA512 3bd89956458a91c5f1b56cff97a95b5010904ef1cd1cca591a93be2f5adaf8ad1a6bb5c570dd107a3ff7d78eca9019133b383b2fae1b96a0e70bad5c9f50c97d
 MISC metadata.xml 295 BLAKE2B 4355bbe00822cc702acdf70031ab9cd1f2a8f6e076d71016c1783f2a6c052c2da0a1a4a1860062562bb837161787f2481fa6f49c4319c546482a263ebe149bb0 SHA512 ace35ca21c614a7c0cbdea2496be3190a907295053566707c1875836a306cc9e9c96816cca6ce2b514935f6fcd494d2e813f4d94ba88552cd7b86831f30501f4
diff --git a/sci-chemistry/dssp/dssp-4.4.0.ebuild b/sci-chemistry/dssp/dssp-4.4.0.ebuild
deleted file mode 100644
index daf7c4f9314d..000000000000
--- a/sci-chemistry/dssp/dssp-4.4.0.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-inherit cmake
-
-DESCRIPTION="The protein secondary structure standard"
-HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
-SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-BDEPEND="
-	dev-libs/boost:=[zlib]
-	>=dev-libs/libmcfp-1.2.2
-	>=sci-libs/libcifpp-5.1.0
-"
-DEPEND=""
-RDEPEND="${BDEPEND}"
-
-src_configure() {
-	# gxrio not packaged
-	local mycmakeargs=(
-		-DBUILD_WEBSERVER=OFF
-	)
-	cmake_src_configure
-}
-
-pkg_postinst() {
-	if has_version "<=sci-chemistry/gromacs-2022"; then
-		ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
-		ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
-		ewarn
-		ewarn "Feel free to mask newer versions if needed."
-	fi
-}
diff --git a/sci-chemistry/dssp/dssp-4.4.1.ebuild b/sci-chemistry/dssp/dssp-4.4.1.ebuild
new file mode 100644
index 000000000000..d79883c4e211
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-4.4.1.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+inherit cmake
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"
+SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+# doc disabled as it only generates a PDF from the manpage for now
+# https://github.com/PDB-REDO/dssp/issues/64
+#IUSE="doc"
+
+CDEPEND="
+	dev-libs/boost:=[zlib]
+	>=dev-libs/libmcfp-1.2.2
+	>=sci-libs/libcifpp-5.1.0
+"
+BDEPEND="${CDEPEND}"
+#	doc? (
+#		|| ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc )
+#		dev-python/weasyprint
+#	)
+DEPEND=""
+RDEPEND="${CDEPEND}"
+
+#src_prepare() {
+#	# wkhtmltopdf is not available on Gentoo
+#	sed -i -e \
+#		's/-t html/-t html --pdf-engine=weasyprint/' \
+#		CMakeLists.txt
+#	cmake_src_prepare
+#}
+
+src_configure() {
+	local mycmakeargs=(
+		#-DGENERATE_DOCUMENTATION=$(usex doc)
+		-DGENERATE_DOCUMENTATION=NO
+	)
+	cmake_src_configure
+}
+
+pkg_postinst() {
+	if has_version "<=sci-chemistry/gromacs-2022"; then
+		ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:"
+		ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"
+		ewarn
+		ewarn "Feel free to mask newer versions if needed."
+	fi
+}
-- 
cgit v1.2.3