From de49812990871e1705b64051c35161d5e6400269 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Mon, 24 Dec 2018 14:11:38 +0000 Subject: gentoo resync : 24.12.2018 --- sci-mathematics/rstudio/Manifest | 5 + .../files/rstudio-1.1.463-boost-1.69.0_p1.patch | 680 +++++++++++++++++++++ .../files/rstudio-1.1.463-boost-1.69.0_p2.patch | 167 +++++ .../rstudio-1.1.463-fix-ptr-int-compare.patch | 13 + sci-mathematics/rstudio/rstudio-1.1.463.ebuild | 253 ++++++++ 5 files changed, 1118 insertions(+) create mode 100644 sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch create mode 100644 sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch create mode 100644 sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch create mode 100644 sci-mathematics/rstudio/rstudio-1.1.463.ebuild (limited to 'sci-mathematics/rstudio') diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest index 5be238bfddb2..d8009dea58fb 100644 --- a/sci-mathematics/rstudio/Manifest +++ b/sci-mathematics/rstudio/Manifest @@ -7,6 +7,9 @@ AUX rstudio-1.0.44-systemd.patch 1147 BLAKE2B ca1b24c2544ff2cb6b9e7a91b4ce25eda7 AUX rstudio-1.1.357-clang-pandoc.patch 3240 BLAKE2B bc7f55d2f2cea64643d02af314afbbd0df1d986889d0d3a2bbf6878e9f8ec7d73710c7e631bf0cbf04b4ecf4142236ef7a1dc0a073d34958a8bd0828594f605d SHA512 3a2fc154f934b4bbd92df6359dc26c27bf2f4f06b2dde572faba3c083879c8e0e98ed776701282d9f3a5cb3f4ac2416e04e6a30beedf4ffa5cbeca3a7e72421b AUX rstudio-1.1.453-boost-1.67.0.patch 1920 BLAKE2B d360259929a73ca6ed7b59997e34dfb2f40992ad6a25372fa2465d07c6df93838d62f5c9dd54b3b45850056bdcba24d20f84eda9480103e71feeac0b20df0a1b SHA512 250c16695c42b03d59ed690de8fc38494ac52047f5fe88b82df431082d524a396266c2b7e8c6afbf3b25e08102d99ef37b3892d62e7bc134f872718880660709 AUX rstudio-1.1.453-core.patch 5843 BLAKE2B 9634a1d619c7e32e672d64ce90c092a9451499ffb27104a5228b4665abeffe7618f92ac04c29b6a3278c2702fe1361be43ba9eb1616acef71c42d39c68df9e65 SHA512 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ecf0e0da004695e5b5520801c4cb3954b4498b9bf2ac651b78ab4cfd82f1228a4fa92b70350ce72c0b36cb311e5cee8fe5026850262d78c51385022803b8429e SHA512 003a9ac1cbefe121d79e70d6a618ac67aee7b83d38ec94ef11f79c70caf10e0c4e312cf13958fd28649ab065939a8c3e8345c30d9e84638e84e3bd5e28b9e193 +EBUILD rstudio-1.1.463.ebuild 8661 BLAKE2B f263fc73b6d36c88066e1267afa3d6f842af1a39a7bbec9c7584464f720e61b2f421eded7bba83499595f6457f6b4be7995e23443eee17b707d87d08a6fd9fab SHA512 bd144a29cc8829cdfc7e067d651804c828315d9598da6aa67830df9407167386e672d1179528b40a1a780d4de1661344d68a8fb79fe170ef9d5e48cd72f64324 MISC metadata.xml 590 BLAKE2B 53dc62775e118c9c26ee05e20ee1da1ac31b6a6b74cf7dac410856fe4e0cce40fbb800c7a03e60f59e14442baf3aad866ad42616ad5fbb5724f7f6d8c1636eea SHA512 7111442aaa52da1e554c34f824113ec0e227798dd11b0ea9148b81e7a31c08b2a527b9995e3adb9363c7a4f2a8594f30cbd4a179545bf31d69f07d5558c20f52 diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch new file mode 100644 index 000000000000..aa3db25f3c01 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p1.patch @@ -0,0 +1,680 @@ +--- /dev/null 2018-11-10 15:32:26.332997437 +1100 ++++ rstudio-1.1.463/src/cpp/core/include/core/BoostSignals.hpp 2018-11-17 21:24:35.285976284 +1100 +@@ -0,0 +1,40 @@ ++/* ++ * BoostSignals.hpp ++ * ++ * Copyright (C) 2009-18 by RStudio, Inc. ++ * ++ * Unless you have received this program directly from RStudio pursuant ++ * to the terms of a commercial license agreement with RStudio, then ++ * this program is licensed to you under the terms of version 3 of the ++ * GNU Affero General Public License. This program is distributed WITHOUT ++ * ANY EXPRESS OR IMPLIED WARRANTY, INCLUDING THOSE OF NON-INFRINGEMENT, ++ * MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. Please refer to the ++ * AGPL (http://www.gnu.org/licenses/agpl-3.0.txt) for more details. ++ * ++ */ ++ ++#ifndef CORE_RSTUDIO_BOOST_SIGNALS_HPP ++#define CORE_RSTUDIO_BOOST_SIGNALS_HPP ++ ++#if RSTUDIO_BOOST_SIGNALS_VERSION == 1 ++ ++# include ++# define RSTUDIO_BOOST_SIGNAL boost::signal ++# define RSTUDIO_BOOST_CONNECTION boost::signals::connection ++# define RSTUDIO_BOOST_SCOPED_CONNECTION boost::signals::scoped_connection ++# define RSTUDIO_BOOST_LAST_VALUE boost::last_value ++ ++#elif RSTUDIO_BOOST_SIGNALS_VERSION == 2 ++ ++# include ++# define RSTUDIO_BOOST_SIGNAL boost::signals2::signal ++# define RSTUDIO_BOOST_CONNECTION boost::signals2::connection ++# define RSTUDIO_BOOST_SCOPED_CONNECTION boost::signals2::scoped_connection ++# define RSTUDIO_BOOST_LAST_VALUE boost::signals2::last_value ++ ++#else ++# error "Unrecognized RSTUDIO_BOOST_SIGNALS_VERSION" ++#endif ++ ++#endif // CORE_RSTUDIO_BOOST_SIGNALS_HPP ++ +--- rstudio-1.1.463-orig/src/cpp/CMakeLists.txt 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/CMakeLists.txt 2018-11-17 21:24:35.285976284 +1100 +@@ -208,6 +208,18 @@ + message(STATUS "Using RStudio-provided Boost ${BOOST_VERSION}") + endif() + ++# allow opt-in to using Boost.Signals2 ++# TODO: remove this in RStudio v1.3 and port to signals2 ++if(NOT RSTUDIO_BOOST_SIGNALS_VERSION) ++ if (BOOST_VERSION VERSION_LESS 1.69.0) ++ set(RSTUDIO_BOOST_SIGNALS_VERSION 1) ++ else() ++ set(RSTUDIO_BOOST_SIGNALS_VERSION 2) ++ endif() ++endif() ++ ++message(STATUS "Using Booost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}") ++add_definitions(-DRSTUDIO_BOOST_SIGNALS_VERSION=${RSTUDIO_BOOST_SIGNALS_VERSION}) + + # add boost as system include directory + include_directories(SYSTEM ${Boost_INCLUDE_DIRS}) +--- rstudio-1.1.463-orig/src/cpp/r/include/r/session/RConsoleHistory.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/r/include/r/session/RConsoleHistory.hpp 2018-11-17 21:24:35.285976284 +1100 +@@ -20,8 +20,8 @@ + + #include + #include +-#include + ++#include + #include + + namespace rstudio { +@@ -44,7 +44,7 @@ + public: + typedef boost::circular_buffer::value_type value_type; + typedef boost::circular_buffer::const_iterator const_iterator; +- typedef boost::signal AddSignal; ++ typedef RSTUDIO_BOOST_SIGNAL AddSignal; + + private: + ConsoleHistory(); +@@ -86,8 +86,7 @@ + core::Error loadFromFile(const core::FilePath& filePath, bool verifyFile); + core::Error saveToFile(const core::FilePath& filePath) const; + +- boost::signals::connection connectOnAdd( +- const AddSignal::slot_function_type& slot) ++ RSTUDIO_BOOST_CONNECTION connectOnAdd(const AddSignal::slot_function_type& slot) + { + return onAdd_.connect(slot); + } +--- rstudio-1.1.463-orig/src/cpp/r/include/r/session/RGraphics.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/r/include/r/session/RGraphics.hpp 2018-11-17 21:24:35.286976293 +1100 +@@ -19,6 +19,8 @@ + #include + #include + ++#include ++ + namespace rstudio { + namespace r { + namespace session { +@@ -56,8 +58,8 @@ + #include + + #include +-#include + ++#include + #include + #include + +@@ -162,7 +164,7 @@ + virtual void clear() = 0; + + // subscribe to showManipulator event +- virtual boost::signal& onShowManipulator() = 0; ++ virtual RSTUDIO_BOOST_SIGNAL& onShowManipulator() = 0; + + // set manipulator values + virtual void setPlotManipulatorValues(const core::json::Object& values) = 0; +--- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManager.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManager.cpp 2018-11-17 21:24:35.286976293 +1100 +@@ -540,7 +540,7 @@ + + + +-boost::signal& PlotManager::onShowManipulator() ++RSTUDIO_BOOST_SIGNAL& PlotManager::onShowManipulator() + { + return plotManipulatorManager().onShowManipulator(); + } +--- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManager.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManager.hpp 2018-11-17 21:24:35.287976303 +1100 +@@ -22,10 +22,10 @@ + #include + #include + #include +-#include + #include + #include + ++#include + #include + #include + +@@ -45,10 +45,10 @@ + + struct GraphicsDeviceEvents + { +- boost::signal onNewPage; +- boost::signal onDrawing; +- boost::signal onResized; +- boost::signal onClosed; ++ RSTUDIO_BOOST_SIGNAL onNewPage; ++ RSTUDIO_BOOST_SIGNAL onDrawing; ++ RSTUDIO_BOOST_SIGNAL onResized; ++ RSTUDIO_BOOST_SIGNAL onClosed; + }; + + class PlotManipulatorManager; +@@ -110,7 +110,7 @@ + + virtual void clear(); + +- virtual boost::signal& onShowManipulator() ; ++ virtual RSTUDIO_BOOST_SIGNAL& onShowManipulator() ; + virtual void setPlotManipulatorValues(const core::json::Object& values); + virtual void manipulatorPlotClicked(int x, int y); + +--- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.cpp 2018-11-17 21:24:35.287976303 +1100 +@@ -184,7 +184,7 @@ + } + + +-boost::signal& PlotManipulatorManager::onShowManipulator() ++RSTUDIO_BOOST_SIGNAL& PlotManipulatorManager::onShowManipulator() + { + return onShowManipulator_; + } +--- rstudio-1.1.463-orig/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/r/session/graphics/RGraphicsPlotManipulatorManager.hpp 2018-11-17 21:24:35.287976303 +1100 +@@ -16,8 +16,7 @@ + #ifndef R_SESSION_GRAPHICS_PLOT_MANIPULATOR_MANAGER_HPP + #define R_SESSION_GRAPHICS_PLOT_MANIPULATOR_MANAGER_HPP + +-#include +- ++#include + #include + #include + +@@ -53,7 +52,7 @@ + public: + core::Error initialize(const UnitConversionFunctions& convert); + +- boost::signal& onShowManipulator() ; ++ RSTUDIO_BOOST_SIGNAL& onShowManipulator() ; + void setPlotManipulatorValues(const core::json::Object& values); + void manipulatorPlotClicked(int x, int y); + +@@ -85,7 +84,7 @@ + bool replayingManipulator_; + + // manipulator event hook +- boost::signal onShowManipulator_; ++ RSTUDIO_BOOST_SIGNAL onShowManipulator_; + + // unit conversion function + UnitConversionFunctions convert_; +--- rstudio-1.1.463-orig/src/cpp/server/include/server/ServerSessionManager.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/server/include/server/ServerSessionManager.hpp 2018-11-17 21:27:05.255436316 +1100 +@@ -20,9 +20,9 @@ + #include + #include + +-#include + #include + ++#include + #include + + #include +--- rstudio-1.1.463-orig/src/cpp/session/SessionMain.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/SessionMain.cpp 2018-11-17 21:24:35.288976313 +1100 +@@ -33,12 +33,12 @@ + #include + #include + +-#include + #include + #include + #include + + #include ++#include + #include + #include + #include +--- rstudio-1.1.463-orig/src/cpp/session/SessionModuleContext.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/SessionModuleContext.cpp 2018-11-17 21:24:35.289976322 +1100 +@@ -19,10 +19,10 @@ + + #include + #include +-#include + #include + #include + ++#include + #include + #include + #include +@@ -586,13 +586,13 @@ + + int nextGroup_; + +- boost::signal, ++ RSTUDIO_BOOST_SIGNAL, + int, + std::less > suspendSignal_; + +- boost::signal, ++ RSTUDIO_BOOST_SIGNAL, + int, + std::greater > resumeSignal_; + }; +--- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionConsoleProcess.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/include/session/SessionConsoleProcess.hpp 2018-11-17 21:24:35.290976332 +1100 +@@ -20,10 +20,10 @@ + #include + + #include +-#include + #include + #include + ++#include + #include + #include + +@@ -146,7 +146,7 @@ + void setPromptHandler( + const boost::function& onPrompt); + +- boost::signal& onExit() { return onExit_; } ++ RSTUDIO_BOOST_SIGNAL& onExit() { return onExit_; } + + std::string handle() const { return procInfo_->getHandle(); } + InteractionMode interactionMode() const { return procInfo_->getInteractionMode(); } +@@ -264,7 +264,7 @@ + boost::mutex inputOutputQueueMutex_; + + boost::function onPrompt_; +- boost::signal onExit_; ++ RSTUDIO_BOOST_SIGNAL onExit_; + + // regex for prompt detection + boost::regex controlCharsPattern_; +--- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionModuleContext.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/include/session/SessionModuleContext.hpp 2018-11-17 21:28:25.019212857 +1100 +@@ -21,9 +21,9 @@ + + #include + #include +-#include + #include + ++#include + #include + #include + #include +@@ -315,35 +315,35 @@ + // session events + struct Events : boost::noncopyable + { +- boost::signal onSessionInfo; +- boost::signal onClientInit; +- boost::signal onBeforeExecute; +- boost::signal onConsolePrompt; +- boost::signal onConsoleInput; +- boost::signal ++ RSTUDIO_BOOST_SIGNAL onSessionInfo; ++ RSTUDIO_BOOST_SIGNAL onClientInit; ++ RSTUDIO_BOOST_SIGNAL onBeforeExecute; ++ RSTUDIO_BOOST_SIGNAL onConsolePrompt; ++ RSTUDIO_BOOST_SIGNAL onConsoleInput; ++ RSTUDIO_BOOST_SIGNAL + onActiveConsoleChanged; +- boost::signal ++ RSTUDIO_BOOST_SIGNAL + onConsoleOutput; +- boost::signal onUserInterrupt; +- boost::signal onDetectChanges; +- boost::signal onSourceEditorFileSaved; +- boost::signal onDeferredInit; +- boost::signal afterSessionInitHook; +- boost::signal onBackgroundProcessing; +- boost::signal onShutdown; +- boost::signal onQuit; +- boost::signal onDestroyed; +- boost::signal&)> ++ RSTUDIO_BOOST_SIGNAL onUserInterrupt; ++ RSTUDIO_BOOST_SIGNAL onDetectChanges; ++ RSTUDIO_BOOST_SIGNAL onSourceEditorFileSaved; ++ RSTUDIO_BOOST_SIGNAL onDeferredInit; ++ RSTUDIO_BOOST_SIGNAL afterSessionInitHook; ++ RSTUDIO_BOOST_SIGNAL onBackgroundProcessing; ++ RSTUDIO_BOOST_SIGNAL onShutdown; ++ RSTUDIO_BOOST_SIGNAL onQuit; ++ RSTUDIO_BOOST_SIGNAL onDestroyed; ++ RSTUDIO_BOOST_SIGNAL&)> + onLibPathsChanged; +- boost::signal onPackageLoaded; +- boost::signal onPackageLibraryMutated; +- boost::signal onPreferencesSaved; +- boost::signal ++ RSTUDIO_BOOST_SIGNAL onPackageLoaded; ++ RSTUDIO_BOOST_SIGNAL onPackageLibraryMutated; ++ RSTUDIO_BOOST_SIGNAL onPreferencesSaved; ++ RSTUDIO_BOOST_SIGNAL + onDistributedEvent; +- boost::signal onPermissionsChanged; ++ RSTUDIO_BOOST_SIGNAL onPermissionsChanged; + + // signal for detecting extended type of documents +- boost::signal), ++ RSTUDIO_BOOST_SIGNAL), + firstNonEmpty > onDetectSourceExtendedType; + }; + +--- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionSourceDatabase.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/include/session/SessionSourceDatabase.hpp 2018-11-17 21:24:35.291976342 +1100 +@@ -21,8 +21,8 @@ + + #include + #include +-#include + ++#include + #include + #include + +@@ -204,14 +204,14 @@ + // source database events + struct Events : boost::noncopyable + { +- boost::signal)> onDocUpdated; +- boost::signal)> onDocUpdated; ++ RSTUDIO_BOOST_SIGNAL)> onDocRenamed; +- boost::signal onDocAdded; +- boost::signal onDocAdded; ++ RSTUDIO_BOOST_SIGNAL)> onDocPendingRemove; +- boost::signal onDocRemoved; +- boost::signal onRemoveAll; ++ RSTUDIO_BOOST_SIGNAL onDocRemoved; ++ RSTUDIO_BOOST_SIGNAL onRemoveAll; + }; + + Events& events(); +--- rstudio-1.1.463-orig/src/cpp/session/include/session/SessionUserSettings.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/include/session/SessionUserSettings.hpp 2018-11-17 21:24:35.291976342 +1100 +@@ -20,8 +20,8 @@ + + #include + #include +-#include + ++#include + #include + #include + #include +@@ -62,7 +62,7 @@ + friend UserSettings& userSettings(); + + public: +- boost::signal onChanged; ++ RSTUDIO_BOOST_SIGNAL onChanged; + + public: + // COPYING: boost::noncopyable +--- rstudio-1.1.463-orig/src/cpp/session/include/session/projects/SessionProjects.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/include/session/projects/SessionProjects.hpp 2018-11-17 21:24:35.291976342 +1100 +@@ -22,8 +22,8 @@ + #include + #include + #include +-#include + ++#include + #include + #include + #include +@@ -220,10 +220,10 @@ + + bool hasFileMonitor_; + std::vector monitorSubscribers_; +- boost::signal&)> onMonitoringEnabled_; +- boost::signal&)> ++ RSTUDIO_BOOST_SIGNAL&)> onMonitoringEnabled_; ++ RSTUDIO_BOOST_SIGNAL&)> + onFilesChanged_; +- boost::signal onMonitoringDisabled_; ++ RSTUDIO_BOOST_SIGNAL onMonitoringDisabled_; + }; + + ProjectContext& projectContext(); +--- rstudio-1.1.463-orig/src/cpp/session/modules/SessionPlots.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/SessionPlots.hpp 2018-11-17 21:24:35.292976352 +1100 +@@ -16,7 +16,7 @@ + #ifndef SESSION_PLOTS_HPP + #define SESSION_PLOTS_HPP + +-#include ++#include + + namespace rstudio { + namespace core { +@@ -35,9 +35,9 @@ + + struct Events : boost::noncopyable + { +- boost::signal onBeforeNewPlot; +- boost::signal onBeforeNewGridPage; +- boost::signal onNewPlot; ++ RSTUDIO_BOOST_SIGNAL onBeforeNewPlot; ++ RSTUDIO_BOOST_SIGNAL onBeforeNewGridPage; ++ RSTUDIO_BOOST_SIGNAL onNewPlot; + }; + + Events& events(); +--- rstudio-1.1.463-orig/src/cpp/session/modules/build/SessionSourceCpp.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/build/SessionSourceCpp.cpp 2018-11-17 21:24:35.293976361 +1100 +@@ -15,11 +15,11 @@ + + #include "SessionSourceCpp.hpp" + +-#include + #include + #include + #include + ++#include + #include + #include + #include +--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookAlternateEngines.cpp 2018-11-17 21:24:35.294976371 +1100 +@@ -142,7 +142,7 @@ + LOG_ERROR(error); + + // capture console output, error +- boost::signals::scoped_connection consoleHandler = ++ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler = + module_context::events().onConsoleOutput.connect( + boost::bind(chunkConsoleOutputHandler, + _1, +@@ -219,7 +219,7 @@ + LOG_ERROR(error); + + // capture console output, error +- boost::signals::scoped_connection consoleHandler = ++ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler = + module_context::events().onConsoleOutput.connect( + boost::bind(chunkConsoleOutputHandler, + _1, +@@ -363,7 +363,7 @@ + LOG_ERROR(error); + + // capture console output, error +- boost::signals::scoped_connection consoleHandler = ++ RSTUDIO_BOOST_SCOPED_CONNECTION consoleHandler = + module_context::events().onConsoleOutput.connect( + boost::bind(chunkConsoleOutputHandler, + _1, +--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookCapture.cpp 2018-11-17 21:24:35.294976371 +1100 +@@ -16,6 +16,8 @@ + #include "SessionRmdNotebook.hpp" + #include "NotebookCapture.hpp" + ++#include ++ + namespace rstudio { + namespace session { + namespace modules { +--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.cpp 2018-11-17 21:24:35.295976381 +1100 +@@ -441,7 +441,7 @@ + } + + // unhook all our event handlers +- BOOST_FOREACH(const boost::signals::connection connection, connections_) ++ BOOST_FOREACH(const RSTUDIO_BOOST_CONNECTION connection, connections_) + { + connection.disconnect(); + } +--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookExec.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookExec.hpp 2018-11-17 21:24:35.295976381 +1100 +@@ -18,8 +18,7 @@ + + #include + +-#include +- ++#include + #include + + #include +@@ -99,7 +98,7 @@ + bool hasErrors_; + + std::vector > captures_; +- std::vector connections_; ++ std::vector connections_; + }; + + } // namespace notebook +--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.cpp 2018-11-17 21:24:35.295976381 +1100 +@@ -20,11 +20,12 @@ + + #include + #include +-#include + +-#include +-#include ++#include + #include ++#include ++ ++#include + + #include + +--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookPlots.hpp 2018-11-17 21:24:35.296976391 +1100 +@@ -18,8 +18,10 @@ + #define SESSION_NOTEBOOK_PLOTS_HPP + + #include +-#include ++ ++#include + #include ++ + #include + + #include "NotebookCapture.hpp" +@@ -80,9 +82,9 @@ + + unsigned lastOrdinal_; + +- boost::signals::connection onBeforeNewPlot_; +- boost::signals::connection onBeforeNewGridPage_; +- boost::signals::connection onNewPlot_; ++ RSTUDIO_BOOST_CONNECTION onBeforeNewPlot_; ++ RSTUDIO_BOOST_CONNECTION onBeforeNewGridPage_; ++ RSTUDIO_BOOST_CONNECTION onNewPlot_; + + double width_; + double height_; +--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/NotebookQueue.cpp 2018-11-17 21:24:35.296976391 +1100 +@@ -87,7 +87,7 @@ + pInput_->enque(kThreadQuitCommand); + + // unregister handlers +- BOOST_FOREACH(boost::signals::connection connection, handlers_) ++ BOOST_FOREACH(RSTUDIO_BOOST_CONNECTION connection, handlers_) + { + connection.disconnect(); + } +@@ -651,7 +651,7 @@ + boost::shared_ptr execContext_; + + // registered signal handlers +- std::vector handlers_; ++ std::vector handlers_; + + // the thread which submits console input, and the queue which feeds it + boost::thread console_; +--- rstudio-1.1.463-orig/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/rmarkdown/SessionRmdNotebook.hpp 2018-11-17 21:24:35.296976391 +1100 +@@ -18,7 +18,8 @@ + #define SESSION_RMARKDOWN_NOTEBOOK_HPP + + #include +-#include ++ ++#include + #include + + #define kChunkLibDir "lib" +@@ -76,24 +77,24 @@ + struct Events : boost::noncopyable + { + // Document {0}, chunk {1} from context id {3} execution completed +- boost::signal + onChunkExecCompleted; + + // Document {0}, chunk {1} had console output of type {2} and text {3} +- boost::signal + onChunkConsoleOutput; + +- boost::signal + onPlotOutput; +- boost::signal onHtmlOutput; +- boost::signal onErrorOutput; +- boost::signal onErrorOutput; ++ RSTUDIO_BOOST_SIGNAL onDataOutput; +- boost::signal ++ RSTUDIO_BOOST_SIGNAL + onCondition; + }; + diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch new file mode 100644 index 000000000000..961723fd224f --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.1.463-boost-1.69.0_p2.patch @@ -0,0 +1,167 @@ +--- rstudio-1.1.463-orig/src/cpp/CMakeLists.txt 2018-11-17 21:24:35.285976284 +1100 ++++ rstudio-1.1.463/src/cpp/CMakeLists.txt 2018-11-17 21:41:02.712507842 +1100 +@@ -175,6 +175,9 @@ + set(Boost_USE_STATIC_LIBS ON) + set(BOOST_INCLUDEDIR ${RSTUDIO_TOOLS_BOOST}/include) + find_package(Boost ${BOOST_VERSION} REQUIRED) ++ if(NOT Boost_VERSION VERSION_LESS 1.69.0) ++ list(REMOVE_ITEM BOOST_LIBS signals) ++ endif() + + # define library list manually (find_package doesn't always pick them up) + set(BOOST_LIB_DIR ${RSTUDIO_TOOLS_BOOST}/lib) +@@ -184,11 +187,15 @@ + message(STATUS "Using RStudio-provided Boost ${BOOST_VERSION}") + else() + add_definitions(-DRSTUDIO_BOOST_NAMESPACE=boost) ++ find_package(Boost ${BOOST_VERSION} REQUIRED) ++ if(NOT Boost_VERSION VERSION_LESS 1.69.0) ++ list(REMOVE_ITEM BOOST_LIBS signals) ++ endif() + find_package(Boost ${BOOST_VERSION} REQUIRED COMPONENTS ${BOOST_LIBS}) + message(STATUS "Using system Boost ${BOOST_VERSION}") + endif() + +- # WIN32 BOOST ++# WIN32 BOOST + else() + # hard-code to our own prebuilt boost libs + add_definitions(-DRSTUDIO_BOOST_NAMESPACE=rstudio_boost) +@@ -211,14 +218,14 @@ + # allow opt-in to using Boost.Signals2 + # TODO: remove this in RStudio v1.3 and port to signals2 + if(NOT RSTUDIO_BOOST_SIGNALS_VERSION) +- if (BOOST_VERSION VERSION_LESS 1.69.0) ++ if (Boost_VERSION VERSION_LESS 1.69.0) + set(RSTUDIO_BOOST_SIGNALS_VERSION 1) + else() + set(RSTUDIO_BOOST_SIGNALS_VERSION 2) + endif() + endif() + +-message(STATUS "Using Booost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}") ++message(STATUS "Using Boost.Signals version ${RSTUDIO_BOOST_SIGNALS_VERSION}") + add_definitions(-DRSTUDIO_BOOST_SIGNALS_VERSION=${RSTUDIO_BOOST_SIGNALS_VERSION}) + + # add boost as system include directory +--- rstudio-1.1.463-orig/src/cpp/core/include/core/r_util/RFunctionInformation.hpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/core/include/core/r_util/RFunctionInformation.hpp 2018-11-17 21:41:02.713507852 +1100 +@@ -75,9 +75,9 @@ + const std::string& name() const { return name_; } + const boost::optional& defaultValue() const { return defaultValue_; } + boost::tribool hasDefault() const { return hasDefault_; } +- bool isUsed() const { return isUsed_; } ++ bool isUsed() const { return bool(isUsed_); } + void setIsUsed(bool value) { isUsed_ = value; } +- bool isMissingnessHandled() const { return isMissingnessHandled_; } ++ bool isMissingnessHandled() const { return bool(isMissingnessHandled_); } + void setMissingnessHandled(bool value) { isMissingnessHandled_ = value; } + + private: +@@ -130,7 +130,7 @@ + + bool isPrimitive() + { +- return isPrimitive_ == true; ++ return bool(isPrimitive_); + } + + void setIsPrimitive(bool isPrimitive) +--- rstudio-1.1.463-orig/src/cpp/session/modules/SessionRParser.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/session/modules/SessionRParser.cpp 2018-11-17 21:41:02.714507862 +1100 +@@ -390,7 +390,7 @@ + if (!failed) + { + DEBUG("--- Found function in pkgInfo index: " << *fnInfo.binding()); +- return fnInfo.performsNse(); ++ return bool(fnInfo.performsNse()); + } + + // Handle some special cases first. +--- rstudio-1.1.463-orig/src/tools/clang-ubsan-build 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/tools/clang-ubsan-build 2018-11-17 21:41:02.714507862 +1100 +@@ -10,19 +10,19 @@ + + : ${RSTUDIO_USE_LIBCXX="Yes"} + : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"} +-: ${RSTUDIO_BOOST_VERSION="1.56.0"} ++: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.56.0"} + + mkdir -p "${BUILD_DIR}" + cd "${BUILD_DIR}" +-cmake ../cpp \ +- -DLIBR_HOME="${R_HOME}" \ +- -DCMAKE_C_COMPILER="${CC}" \ +- -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ +- -DCMAKE_CXX_COMPILER="${CXX}" \ +- -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ +- -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \ +- -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \ +- -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}" \ ++cmake ../cpp \ ++ -DLIBR_HOME="${R_HOME}" \ ++ -DCMAKE_C_COMPILER="${CC}" \ ++ -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ ++ -DCMAKE_CXX_COMPILER="${CXX}" \ ++ -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ ++ -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \ ++ -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \ ++ -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \ + "$@" + cd .. + +--- rstudio-1.1.463-orig/src/tools/gcc-ubsan-build 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/tools/gcc-ubsan-build 2018-11-17 21:41:02.715507871 +1100 +@@ -19,19 +19,19 @@ + # NOTE: Boost 1.50.0 not compatible with gcc-6 + : ${RSTUDIO_USE_LIBCXX="No"} + : ${RSTUDIO_USE_SYSTEM_BOOST="Yes"} +-: ${RSTUDIO_BOOST_VERSION="1.54.0"} ++: ${RSTUDIO_BOOST_REQUESTED_VERSION="1.54.0"} + + mkdir -p "${BUILD_DIR}" + cd "${BUILD_DIR}" +-cmake ../cpp \ +- -DLIBR_HOME="${R_HOME}" \ +- -DCMAKE_C_COMPILER="${CC}" \ +- -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ +- -DCMAKE_CXX_COMPILER="${CXX}" \ +- -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ +- -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \ +- -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \ +- -DRSTUDIO_BOOST_VERSION="${RSTUDIO_BOOST_VERSION}" \ ++cmake ../cpp \ ++ -DLIBR_HOME="${R_HOME}" \ ++ -DCMAKE_C_COMPILER="${CC}" \ ++ -DCMAKE_C_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ ++ -DCMAKE_CXX_COMPILER="${CXX}" \ ++ -DCMAKE_CXX_FLAGS="${ASANFLAGS} ${LDFLAGS}" \ ++ -DRSTUDIO_USE_LIBCXX="${RSTUDIO_USE_LIBCXX}" \ ++ -DRSTUDIO_USE_SYSTEM_BOOST="${RSTUDIO_USE_SYSTEM_BOOST}" \ ++ -DRSTUDIO_BOOST_REQUESTED_VERSION="${RSTUDIO_BOOST_REQUESTED_VERSION}" \ + "$@" + cd .. + +--- rstudio-1.1.463-orig/src/tools/xcode-ubsan-build 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/tools/xcode-ubsan-build 2018-11-17 21:41:02.715507871 +1100 +@@ -15,13 +15,13 @@ + # sanitizers released with newer versions of clang) + mkdir -p "${BUILD_DIR}" + cd "${BUILD_DIR}" +-cmake ../cpp -GXcode \ +- -DLIBR_HOME="${R_HOME}" \ +- -DLIBR_INCLUDE_DIRS="${R_INCL}" \ +- -DLIBR_DOC_DIR="${R_DOCS}" \ +- -DRSTUDIO_USE_LIBCXX="Yes" \ +- -DRSTUDIO_USE_SYSTEM_BOOST="Yes" \ +- -DRSTUDIO_BOOST_VERSION="1.56.0" \ ++cmake ../cpp -GXcode \ ++ -DLIBR_HOME="${R_HOME}" \ ++ -DLIBR_INCLUDE_DIRS="${R_INCL}" \ ++ -DLIBR_DOC_DIR="${R_DOCS}" \ ++ -DRSTUDIO_USE_LIBCXX="Yes" \ ++ -DRSTUDIO_USE_SYSTEM_BOOST="Yes" \ ++ -DRSTUDIO_BOOST_REQUESTED_VERSION="1.56.0" \ + "$@" + cmake ../cpp -DLIBR_LIBRARIES="${R_LIBS}/libR.dylib" + cd .. diff --git a/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch b/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch new file mode 100644 index 000000000000..914cd942e8f4 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-1.1.463-fix-ptr-int-compare.patch @@ -0,0 +1,13 @@ +--- rstudio-1.1.463-orig/src/cpp/server/ServerSecureKeyFile.cpp 2018-10-25 09:42:55.000000000 +1100 ++++ rstudio-1.1.463/src/cpp/server/ServerSecureKeyFile.cpp 2018-11-17 22:17:18.110012955 +1100 +@@ -79,8 +79,8 @@ + return error; + + // change mode it so it is only readable and writeable by this user +- if (changeFileMode(secureKeyPath, +- core::system::UserReadWriteMode) < 0) ++ if (!!changeFileMode(secureKeyPath, ++ core::system::UserReadWriteMode)) + { + return systemError(errno, ERROR_LOCATION); + } diff --git a/sci-mathematics/rstudio/rstudio-1.1.463.ebuild b/sci-mathematics/rstudio/rstudio-1.1.463.ebuild new file mode 100644 index 000000000000..f2d6cf5a20f7 --- /dev/null +++ b/sci-mathematics/rstudio/rstudio-1.1.463.ebuild @@ -0,0 +1,253 @@ +# Copyright 1999-2018 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit eutils user cmake-utils gnome2-utils pam versionator xdg-utils java-pkg-2 pax-utils qmake-utils + +# TODO +# * package gin and gwt +# * use dict from tree, linguas +# * do src_test (use junit from tree?) + +# update from scripts in dependencies/common +# egrep '(GWT_SDK_VER=|GIN_VER=|SELENIUM_VER=|CHROMEDRIVER_VER=)' dependencies/common/install-gwt +GWT_VER=2.7.0 +GIN_VER=1.5 +SELENIUM_VER=2.37.0 +CHROMEDRIVER_VER=2.7 +# grep 'PANDOC_VERSION=' dependencies/common/install-pandoc +PANDOC_VER=1.19.2.1 +# ls dependencies/common/*.tar.gz +PACKRAT_VER=0.98.1000 +RMARKDOWN_VER=0.98.1000 +SHINYAPPS_VER=0.98.1000 +RSCONNECT_VER=0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0 + +DESCRIPTION="IDE for the R language" +HOMEPAGE=" + http://www.rstudio.org + https://github.com/rstudio/rstudio/" +SRC_URI=" + https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz + https://s3.amazonaws.com/rstudio-buildtools/gin-${GIN_VER}.zip + https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWT_VER}.zip + https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUM_VER}.zip + https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUM_VER}.jar + https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux + https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip + https://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz + https://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz + https://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz + https://dev.gentoo.org/~gienah/distfiles/rsconnect_${RSCONNECT_VER}.tar.gz +" + +LICENSE="AGPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="dedicated libressl server" + +QT_VER=5.4 +QT_SLOT=5 +RDEPEND=" + >=app-text/pandoc-${PANDOC_VER} + dev-haskell/pandoc-citeproc + >=dev-lang/R-2.11.1 + >=dev-libs/boost-1.63:= + >=dev-libs/mathjax-2.7.4 + sys-apps/util-linux + >=sys-devel/clang-3.5.0:* + sys-libs/zlib + >=virtual/jre-1.8:= + x11-libs/pango + !dedicated? ( + >=dev-qt/qtcore-${QT_VER}:${QT_SLOT} + >=dev-qt/qtdeclarative-${QT_VER}:${QT_SLOT} + >=dev-qt/qtdbus-${QT_VER}:${QT_SLOT} + >=dev-qt/qtgui-${QT_VER}:${QT_SLOT} + >=dev-qt/qtnetwork-${QT_VER}:${QT_SLOT} + >=dev-qt/qtopengl-${QT_VER}:${QT_SLOT} + >=dev-qt/qtpositioning-${QT_VER}:${QT_SLOT} + >=dev-qt/qtprintsupport-${QT_VER}:${QT_SLOT} + >=dev-qt/qtsingleapplication-2.6.1_p20150629[X,qt5(+)] + >=dev-qt/qtsensors-${QT_VER}:${QT_SLOT} + >=dev-qt/qtsql-${QT_VER}:${QT_SLOT} + >=dev-qt/qtsvg-${QT_VER}:${QT_SLOT} + >=dev-qt/qtwebchannel-${QT_VER}:${QT_SLOT} + >=dev-qt/qtwebkit-${QT_VER}:${QT_SLOT} + >=dev-qt/qtwidgets-${QT_VER}:${QT_SLOT} + >=dev-qt/qtxml-${QT_VER}:${QT_SLOT} + >=dev-qt/qtxmlpatterns-${QT_VER}:${QT_SLOT} + server? ( virtual/pam ) + ) + dedicated? ( virtual/pam ) + !libressl? ( dev-libs/openssl:0 ) + libressl? ( dev-libs/libressl:0 )" +DEPEND="${RDEPEND} + app-arch/unzip + dev-java/ant-core + >=virtual/jdk-1.8:= + virtual/pkgconfig" +# test? ( dev-java/junit:4 ) + +PATCHES=( + "${FILESDIR}/${PN}-0.99.879-prefs.patch" + "${FILESDIR}/${PN}-1.0.44-paths.patch" + "${FILESDIR}/${PN}-1.1.357-clang-pandoc.patch" + "${FILESDIR}/${PN}-0.98.490-linker_flags.patch" + "${FILESDIR}/${PN}-0.99.473-qtsingleapplication.patch" + "${FILESDIR}/${PN}-1.0.44-systemd.patch" + "${FILESDIR}/${PN}-1.1.453-boost-1.67.0.patch" + "${FILESDIR}/${PN}-1.1.453-core.patch" + "${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p1.patch" + "${FILESDIR}/${PN}-1.1.463-boost-1.69.0_p2.patch" + "${FILESDIR}/${PN}-1.1.463-fix-ptr-int-compare.patch" +) + +src_unpack() { + unpack ${P}.tar.gz gwt-${GWT_VER}.zip + cd "${S}" || die + mkdir -p src/gwt/lib/{gin,gwt} \ + dependencies/common/dictionaries \ + src/gwt/lib/selenium/${SELENIUM_VER} \ + src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die + mv ../gwt-${GWT_VER} src/gwt/lib/gwt/${GWT_VER} || die + unzip -qd src/gwt/lib/gin/${GIN_VER} \ + "${DISTDIR}"/gin-${GIN_VER}.zip || die + unzip -qd dependencies/common/dictionaries \ + "${DISTDIR}"/core-dictionaries.zip || die + unzip -qd src/gwt/lib/selenium/${SELENIUM_VER} \ + "${DISTDIR}"/selenium-java-${SELENIUM_VER}.zip || die + cp "${DISTDIR}"/selenium-server-standalone-${SELENIUM_VER}.jar \ + src/gwt/lib/selenium/${SELENIUM_VER}/ || die + cp "${DISTDIR}"/chromedriver-linux \ + src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die + cd dependencies/common || die + unpack packrat-${PACKRAT_VER}.tar.gz + unpack rmarkdown-${RMARKDOWN_VER}.tar.gz + unpack shinyapps-${SHINYAPPS_VER}.tar.gz + unpack rsconnect_${RSCONNECT_VER}.tar.gz + cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \ + . || die + cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \ + . || die + cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \ + . || die + cp "${DISTDIR}"/rsconnect_${RSCONNECT_VER}.tar.gz \ + . || die +} + +src_prepare() { + cmake-utils_src_prepare + java-pkg-2_src_prepare + egit_clean + + # Enable CMake to install our .service file for systemd usage + mkdir -vp "${S}/src/cpp/server/lib/systemd/system" || die + cp -v "${FILESDIR}/rstudio-server.service.in" "${S}/src/cpp/server/lib/systemd/system/" || die + + # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using + # this sed hack for now. ~RMH + sed -i \ + -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \ + src/cpp/server/ServerOptions.cpp \ + src/cpp/session/SessionOptions.cpp || die + + # use mathjax from system + ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-26 || die + + # make sure icons and mime stuff are with prefix + sed -i \ + -e "s:/usr:${EPREFIX}/usr:g" \ + CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf + sed -e "s@/etc/rstudio/rserver.conf@${EROOT}etc/conf.d/rstudio-server.conf@" \ + -i src/cpp/server/ServerOptions.cpp \ + || die + + # Set the rsession.conf file location for Gentoo prefix + sed -e "s@/etc/rstudio/rsession.conf@${EROOT}etc/rstudio/rsession.conf@" \ + -i src/cpp/session/SessionOptions.cpp \ + || die + + # dev-qt/qtsingleapplication-2.6.1_p20150629 does not provide a cmake module. + # It provides a library that has its version number appended to the end, + # which is difficult to handle in cmake, as find_library does not support + # searching for wildcard library names. So I find the library name from the + # qmake spec, and then sed this into the patched src/cpp/desktop/CMakeLists.txt. + rm -rf "${S}"/src/cpp/desktop/3rdparty || die + local s=$(grep '\-lQt$${QT_MAJOR_VERSION}Solutions_SingleApplication' \ + $(qt5_get_mkspecsdir)/features/qtsingleapplication.prf \ + | sed -e 's@\$\${QT_MAJOR_VERSION}@5@' \ + -e 's@LIBS \*= -l@@') + sed -e "s@Qt5Solutions_SingleApplication-2.6@${s}@g" \ + -i "${S}"/src/cpp/desktop/CMakeLists.txt \ + || die + + # The git commit for tag: git rev-list -n 1 v${PV} + sed -e 's@git ARGS rev-parse HEAD@echo ARGS 6871a99b32add885fe6fa3d50fe15f62346142e7@'\ + -i "${S}"/CMakeLists.txt \ + "${S}"/CMakeGlobals.txt \ + || die +} + +src_configure() { + export RSTUDIO_VERSION_MAJOR=$(get_version_component_range 1) + export RSTUDIO_VERSION_MINOR=$(get_version_component_range 2) + export RSTUDIO_VERSION_PATCH=$(get_version_component_range 3) + + local mycmakeargs=( + -DDISTRO_SHARE=share/${PN} + -DRSTUDIO_INSTALL_FREEDESKTOP="$(usex !dedicated "ON" "OFF")" + -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")") + -DQT_QMAKE_EXECUTABLE=$(qt5_get_bindir)/qmake + -DRSTUDIO_VERIFY_R_VERSION=FALSE + ) + + cmake-utils_src_configure +} + +src_compile() { + # Avoid the rest of the oracle-jdk-bin-1.8.0.60 sandbox violations F: mkdir S: deny + # P: /root/.oracle_jre_usage. + export ANT_OPTS="-Duser.home=${T}" + cmake-utils_src_compile +} + +src_install() { + export ANT_OPTS="-Duser.home=${T}" + cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" + doconfd "${FILESDIR}"/rstudio-server.conf + dodir /etc/rstudio + insinto /etc/rstudio + doins "${FILESDIR}"/rsession.conf + dosym "${ROOT}etc/conf.d/rstudio-server.conf" "${ROOT}etc/rstudio/rserver.conf" + if use dedicated || use server; then + dopamd src/cpp/server/extras/pam/rstudio + newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server + fi +} + +pkg_preinst() { + use dedicated || gnome2_icon_savelist + java-pkg-2_pkg_preinst +} + +pkg_postinst() { + use dedicated || { xdg_desktop_database_update + xdg_mimeinfo_database_update + gnome2_icon_cache_update ;} + + if use dedicated || use server; then + enewgroup rstudio-server + enewuser rstudio-server -1 -1 -1 rstudio-server + fi +} + +pkg_postrm() { + use dedicated || { xdg_desktop_database_update + xdg_mimeinfo_database_update + gnome2_icon_cache_update ;} +} -- cgit v1.2.3