From d18bf1e01b65ee4bf0c804e2843b282d3d4e5d7c Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Tue, 15 Jun 2021 14:57:03 +0100 Subject: gentoo resync : 15.06.2021 --- sys-cluster/openmpi/Manifest | 3 +- sys-cluster/openmpi/metadata.xml | 6 +- sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild | 176 ++++++++++++++++++++++++++++ 3 files changed, 182 insertions(+), 3 deletions(-) create mode 100644 sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild (limited to 'sys-cluster/openmpi') diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest index a746608a607b..9f8493927f11 100644 --- a/sys-cluster/openmpi/Manifest +++ b/sys-cluster/openmpi/Manifest @@ -25,5 +25,6 @@ EBUILD openmpi-3.1.4.ebuild 5381 BLAKE2B 806722e9526f4659ac549e306c169d2647078a1 EBUILD openmpi-4.0.2.ebuild 5321 BLAKE2B 09350d41a27b89cc1938e2ecc9330b5b9511cfda313ec1c46467ae148ecf2c752d301d1c21d9cb164550f9f792fdbd1d1684a1ed2285be59a85d7c5ce4b332cf SHA512 09b95d07f982900cd4d46eaaba11a316528d37c6ac48b1ce51fb94968481530e8283170405bb3c7c9272ae7c452f3cc8f57a55ddd645854c6c1c318f45363b35 EBUILD openmpi-4.0.3.ebuild 5321 BLAKE2B 09350d41a27b89cc1938e2ecc9330b5b9511cfda313ec1c46467ae148ecf2c752d301d1c21d9cb164550f9f792fdbd1d1684a1ed2285be59a85d7c5ce4b332cf SHA512 09b95d07f982900cd4d46eaaba11a316528d37c6ac48b1ce51fb94968481530e8283170405bb3c7c9272ae7c452f3cc8f57a55ddd645854c6c1c318f45363b35 EBUILD openmpi-4.0.4.ebuild 5321 BLAKE2B 09350d41a27b89cc1938e2ecc9330b5b9511cfda313ec1c46467ae148ecf2c752d301d1c21d9cb164550f9f792fdbd1d1684a1ed2285be59a85d7c5ce4b332cf SHA512 09b95d07f982900cd4d46eaaba11a316528d37c6ac48b1ce51fb94968481530e8283170405bb3c7c9272ae7c452f3cc8f57a55ddd645854c6c1c318f45363b35 +EBUILD openmpi-4.0.5-r1.ebuild 5441 BLAKE2B 3ee33cc55af1b87ae06bb9a7dba22b8e03bdbb6e0d5104f2de3e30d8cf84ee03828811ffede6fe18d066b4d97472cd5c4a878ea30b3406a1977ab3812c76f5c0 SHA512 bdad805c425f9cc5b03451be0d2d67397bf09aade29571ca37d4540700565175c4c628ff81099f1711e2c006a8a9ea6a0c64446ec23d109c55d203a6d1a3b5cc EBUILD openmpi-4.0.5.ebuild 5379 BLAKE2B 4f710429ea2e112c0c1500371c199e990da8b15aed1df010372efcef84cc09b740f1ed39cac64170136f7f6831e475cc4643ec4424abde0501744f9c34667174 SHA512 da2d5951249ae7c4c191c8aef70bd092dae49593db86f675578d182b4e04888b9db5d13bea062ccf2e9702a5bf210b3f51658de4770d71c97cc13246995a841a -MISC metadata.xml 820 BLAKE2B b606cd3e91faba78d213cd55ef0f23f03085b78374b604dfa5f2f4ff3add9a6cc4c42b071579e30f9b72197c2b41dbb302d8f393881392f400296ff6b59fe0db SHA512 9025216b610924a248c80843da4e90e615078933d332ca06f4ac9c1fa46bf94a444c6b2704f1ad470f7beed797c66ee59cb961cd88e17c5b5c18d315a2233f5d +MISC metadata.xml 960 BLAKE2B 6b4a60bb64814ddf030e39210ea97c613e2777a665355a5228bf30f128f1a51f958113093c071a9d4e89e40019eade71c68a5c2c32abfca5fa5f050fdb080c10 SHA512 e0c3b2fb31a353bebb1aaf752dee4a376aa8694522321d91851cd806a874ff20879ec2f1a1258c9379fcabdf5b75007900aa1073a3dd26f41070d9f02b4c042e diff --git a/sys-cluster/openmpi/metadata.xml b/sys-cluster/openmpi/metadata.xml index e319ff476a17..32314bce38b5 100644 --- a/sys-cluster/openmpi/metadata.xml +++ b/sys-cluster/openmpi/metadata.xml @@ -10,10 +10,12 @@ Add GPU direct support Enable features required for heterogeneous platform support - Build the ROMIO MPI-IO component + Enable support for contributed package libompitrace Enable MPI_THREAD_MULTIPLE Enable numactl to allow binding processes to CPUs - Enable bundled VampirTrace support Add support for the Portable Batch System (PBS) + Enable PERUSE interface + Build the ROMIO MPI-IO component + Enable bundled VampirTrace support diff --git a/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild b/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild new file mode 100644 index 000000000000..0f2a2af8b199 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-4.0.5-r1.ebuild @@ -0,0 +1,176 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +FORTRAN_NEEDED=fortran + +inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib multilib-minimal + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="https://www.open-mpi.org" +SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux" +IUSE="cma cuda cxx fortran heterogeneous ipv6 java libompitrace peruse romio + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" + +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + >=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads] + dev-libs/libltdl:0[${MULTILIB_USEDEP}] + >=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP}] + >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) + openmpi_fabrics_ofed? ( || ( sys-cluster/rdma-core sys-fabric/ofed:* ) ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( || ( sys-cluster/rdma-core sys-fabric/librdmacm:* ) )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +MULTILIB_WRAPPED_HEADERS=( + /usr/include/mpi.h + /usr/include/openmpi/ompi/mpi/java/mpiJava.h +) + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die +} + +multilib_src_configure() { + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + local myconf=( + --enable-mpi-fortran=$(usex fortran all no) + --enable-orterun-prefix-by-default + --enable-pretty-print-stacktrace + + --sysconfdir="${EPREFIX}/etc/${PN}" + + --with-hwloc="${EPREFIX}/usr" + --with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" + --with-libltdl="${EPREFIX}/usr" + --with-libevent="${EPREFIX}/usr" + --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" + + $(use_enable cxx mpi-cxx) + $(use_enable heterogeneous) + $(use_enable ipv6) + $(use_enable libompitrace) + $(use_enable peruse) + $(use_enable romio io-romio) + + $(use_with cma) + + $(multilib_native_use_enable java mpi-java) + $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) + $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) + $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) + $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) + + $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) + $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) + $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) + $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) + $(multilib_native_use_with openmpi_rm_pbs tm) + $(multilib_native_use_with openmpi_rm_slurm slurm) + ) + ECONF_SOURCE=${S} econf "${myconf[@]}" +} + +multilib_src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} + +multilib_src_install() { + default + + # fortran header cannot be wrapped (bug #540508), workaround part 1 + if multilib_is_native_abi && use fortran; then + mkdir "${T}"/fortran || die + mv "${ED}"/usr/include/mpif* "${T}"/fortran || die + else + # some fortran files get installed unconditionally + rm \ + "${ED}"/usr/include/mpif* \ + "${ED}"/usr/bin/mpif* \ + || die + fi +} + +multilib_src_install_all() { + # fortran header cannot be wrapped (bug #540508), workaround part 2 + if use fortran; then + mv "${T}"/fortran/mpif* "${ED}"/usr/include || die + fi + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die + + if use java; then + local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + einstalldocs +} -- cgit v1.2.3