blob: 61e65c0b73ce86caa82731f2f2fc40119639ab0b (
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--- a/Makefile.in
+++ b/Makefile.in
@@ -1,7 +1,11 @@
-PREFIX = /usr/local/bin
+prefix = @prefix@
+exec_prefix = @exec_prefix@
+bindir = @bindir@
TEST = test/
-CC = gcc
-CFLAGS = -O9 -Wall
+CC = @CC@
+CFLAGS = @CFLAGS@
+CPPFLAGS = @CPPFLAGS@
+LDFLAGS = @LDFLAGS@
DEBUGFLAGS = -ggdb -Wall
SOURCES = kalign2_distance_calculation.c kalign2_dp.c kalign2_input.c kalign2_main.c kalign2_mem.c kalign2_inferface.c kalign2_misc.c kalign2_tree.c kalign2_profile.c kalign2_alignment_types.c kalign2_feature.c kalign2_hirschberg.c kalign2_advanced_gaps.c kalign2_hirschberg_dna.c kalign2_output.c kalign2_string_matching.c kalign2_profile_alignment.c
@@ -16,10 +20,7 @@
.PHONY: clean
all: $(OBJECTS)
- $(CC) $(CFLAGS) $(OBJECTS) -o $(PROGS)
-
-%.o: %.c
- $(CC) $(CFLAGS) -c $<
+ $(CC) $(LDFLAGS) $(CFLAGS) $(OBJECTS) -o $(PROGS)
debug: $(DEBUGOBJECTS)
$(CC) $(DEBUGFLAGS) $(DEBUGOBJECTS) -o $(DEBUGPROGS)
@@ -29,7 +30,8 @@
install:
- cp $(PROGS) /usr/local/bin/
+ mkdir -p $(DESTDIR)$(bindir)
+ cp $(PROGS) $(DESTDIR)$(bindir)
clean:
rm -f $(PROGS) $(OBJECTS)
|
