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Diffstat (limited to 'sci-biology/HTSeq/HTSeq-2.0.2.ebuild')
-rw-r--r-- | sci-biology/HTSeq/HTSeq-2.0.2.ebuild | 66 |
1 files changed, 0 insertions, 66 deletions
diff --git a/sci-biology/HTSeq/HTSeq-2.0.2.ebuild b/sci-biology/HTSeq/HTSeq-2.0.2.ebuild deleted file mode 100644 index b4b7974e60d0..000000000000 --- a/sci-biology/HTSeq/HTSeq-2.0.2.ebuild +++ /dev/null @@ -1,66 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -DISTUTILS_IN_SOURCE_BUILD=1 -PYTHON_COMPAT=( python3_{9..11} ) - -inherit distutils-r1 flag-o-matic - -DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files" -HOMEPAGE="https://htseq.readthedocs.io/" - -if [[ ${PV} == *9999 ]]; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/htseq/htseq.git" -else - SRC_URI="https://github.com/htseq/htseq/archive/release_${PV}.tar.gz -> ${P}.gh.tar.gz" - - S="${WORKDIR}"/htseq-release_${PV} - KEYWORDS="~amd64" -fi - -LICENSE="GPL-3+" -SLOT="0" - -RDEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - sci-biology/pysam[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND} - test? ( - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - )" -BDEPEND=" - >=dev-lang/swig-3.0.8 - dev-python/cython[${PYTHON_USEDEP}]" - -distutils_enable_tests pytest - -src_configure() { - # mask broken asserts in src/step_vector.h:72 - append-cppflags -DNDEBUG - - distutils-r1_src_configure -} - -python_test() { - distutils_install_for_testing - - # Due to the build directories creating a competing - # hierarchy, we move to the test/ dir to avoid implicitly - # injecting the root HTSeq/ dir into the PYTHONPATH, - # which leads the python module lookup astray: - # ${PWD} - # ├── build - # │ ├── lib - # │ │ └── HTSeq - # │ [...] - # ├── HTSeq - # └── test - cd test/ || die - ln -s ../example_data || die - epytest -} |