gentoo resync : 17.10.2017

2 files changed, 94 insertions, 0 deletions

diff --git a/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild b/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild
new file mode 100644
index 000000000000..fbd25fa1e003
--- /dev/null
+++ b/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild
@@ -0,0 +1,93 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DIST_AUTHOR=LDS
+DIST_VERSION=1.17
+DIST_EXAMPLES=("eg/*")
+inherit perl-module
+
+DESCRIPTION="Interface to Distributed Annotation System"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=">=virtual/perl-IO-Compress-1.0
+	sci-biology/bioperl
+	>=dev-perl/HTML-Parser-3
+	>=dev-perl/libwww-perl-5
+	>=virtual/perl-MIME-Base64-2.12"
+RDEPEND="${DEPEND}"
+
+optdep_notice() {
+	local i
+	elog "This package has several modules which may require additional dependencies"
+	elog "to use. However, it is up to you to install them separately if you need this"
+	elog "optional functionality:"
+	elog
+	i="$(if has_version 'dev-perl/CGI'; then echo '[I]'; else echo '[ ]'; fi)"
+	elog " $i dev-perl/CGI"
+	elog "     - Running a reference DAS server driven by an AGP File via"
+	elog "       Bio::Das::AGPServer::Daemon"
+
+	if use test; then
+		elog
+		elog "This module will perform additional tests if these dependencies are"
+		elog "pre-installed"
+	fi
+}
+src_test() {
+	local MODULES=(
+		"Bio::Das ${DIST_VERSION}"
+		"Bio::Das::AGPServer::Config 1.0"
+		"Bio::Das::AGPServer::Parser"
+		"Bio::Das::AGPServer::SQLStorage"
+		"Bio::Das::AGPServer::SQLStorage::CSV::DB"
+		"Bio::Das::AGPServer::SQLStorage::MySQL::DB"
+		"Bio::Das::DSN"
+		"Bio::Das::Feature 0.91"
+		"Bio::Das::FeatureIterator 0.01"
+		"Bio::Das::HTTP::Fetch 1.11"
+		"Bio::Das::Map 1.01"
+		"Bio::Das::Request"
+		"Bio::Das::Request::Dnas"
+		"Bio::Das::Request::Dsn"
+		"Bio::Das::Request::Entry_points"
+		"Bio::Das::Request::Feature2Segments"
+		"Bio::Das::Request::Features"
+		"Bio::Das::Request::Sequences"
+		"Bio::Das::Request::Stylesheet"
+		"Bio::Das::Request::Types"
+		"Bio::Das::Segment 0.91"
+		"Bio::Das::Stylesheet 1.00"
+		"Bio::Das::Type"
+		"Bio::Das::TypeHandler"
+		"Bio::Das::Util 0.01"
+	)
+	has_version dev-perl/CGI && MODULES+=(
+		"Bio::Das::AGPServer::Daemon"
+	)
+	local failed=()
+	for dep in "${MODULES[@]}"; do
+		ebegin "Compile testing ${dep}"
+			perl -Mblib="${S}" -M"${dep} ()" -e1
+		eend $? || failed+=( "$dep" )
+	done
+	if [[ ${failed[@]} ]]; then
+		echo
+		eerror "One or more modules failed compile:";
+		for dep in "${failed[@]}"; do
+			eerror "  ${dep}"
+		done
+		die "Failing due to module compilation errors";
+	fi
+	if has "network" ${DIST_TEST_OVERRIDE:-${DIST_TEST:-do parallel}}; then
+		perl-module_src_test
+	else
+		ewarn "Functional parts of these tests require network access"
+		ewarn "For details, see:"
+		ewarn "https://wiki.gentoo.org/wiki/Project:Perl/maint-notes/dev-perl/Bio-Das"
+	fi
+}
diff --git a/dev-perl/Bio-Das/Manifest b/dev-perl/Bio-Das/Manifest
index a132a5530f8b..23ffefc02c53 100644
--- a/dev-perl/Bio-Das/Manifest
+++ b/dev-perl/Bio-Das/Manifest
@@ -1,5 +1,6 @@
 DIST Bio-Das-1.17.tar.gz 105270 SHA256 cfe4980e47021e69ae3ba26c88dde29aef10f934f5ca10e9ffd1a99b472792f7 SHA512 c44d3571f4f4c777d8315db19cf704cc5ff4d48a8edae8b9a43f7d47df709bee476d810ce1e96bec5ccf44b7cf3373f79b892c0a1d17715f19ffdff81558292e WHIRLPOOL e440e5aa5918252fe50d5d0e72121f309137e26df4eb011ed49f83d5a18d50f63c856ca9774c867085a4a05daf3051e7d88f4e9743a106c97b8da6fc1091399d
 EBUILD Bio-Das-1.170.0-r1.ebuild 457 SHA256 223a0ef1f25490eae66552d6b2995e70c8e322a2b1db795a4f7d2279271cdd2c SHA512 151222575fa264a9ebebd97b972af8fa6535c9719b2f21d11e43b01054f19bad5d2e138980769b54ef96648a8f505252e02f9a526a05314b81c4f119f0ae90b6 WHIRLPOOL 3b73515ac169218684c6dd83d57e179950e1da0a60c62922d1baf2baf2762c980e6cfb82b7252670d332469726d0f059b7f48f7a426bfbb56b62c47bcf7809d3
+EBUILD Bio-Das-1.170.0-r2.ebuild 2557 SHA256 4850aa978075c688d47473d5274ac3c7994f946742f3ec1740a33e2cddc1ca6a SHA512 93a97d39620eb67fa9cb1d1f86a65c52a86640440ac0d4de3d397f225e9af243d2b60b4a313c4252a280d3ca54e893225bbae835461fb70c41e3fb894b6bcdae WHIRLPOOL 80e7b9c9fe5aec13b115256649f115b2384f0f03d16244624c0dce518e5a95218beacb4cdbe988429ab1e9f66905e6ed9c70d27d2f1869927c321aca83e06668
 MISC ChangeLog 2437 SHA256 6846b079924b77f1f3ef9c18cb00828d95d0cb9a48ad38700a6ec00e3446c6c9 SHA512 ed604b70daf9b77738a6c556000dcb83d24fa4b23a485ea1dcba46f9181b15d0a4639c571adcadbc6b085a77b8034fa0658a94b996038feb81af233a74fa1516 WHIRLPOOL ace763c556b43b7e659482e3385461610e2f11db888c4af6ea9a8eb47dd37681708d52ef0e7c979213775c80a8c7d8d16eebf521c0d7e5b927709e54407fc39e
 MISC ChangeLog-2015 4274 SHA256 8a1197a900afa8dce9d4a3c8e6d216f7e93a0081d854701f33e7e866c7731513 SHA512 d846ad42ca8c8635d7e90e9b8f7cea32e8d5f78b446e4f71be79639297af577c03027514c9913bb72e9dfa071d928d15c1016793fd441f5b9bc25e650b62faf0 WHIRLPOOL 86abd62dbec507e6baddd08ec5a78b9db6ff9cfd40767614fd77c029c0cd906aac4403d1f6fd2417d0cf80d870bdf7612ae9ee18737ff43b76c7686632a5fd70
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