reinit the tree, so we can have metadata

3 files changed, 153 insertions, 0 deletions

diff --git a/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild b/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild
new file mode 100644
index 000000000000..00d3935f6fcb
--- /dev/null
+++ b/dev-perl/Bio-Graphics/Bio-Graphics-2.390.0.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+MODULE_AUTHOR=LDS
+MODULE_VERSION=2.39
+inherit perl-module
+
+DESCRIPTION="Generate images from Bio::Seq objects for visualization purposes"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	>=dev-perl/GD-2.300.0
+	>=dev-perl/Statistics-Descriptive-2.600.0
+	>=sci-biology/bioperl-1.5.9.1
+	dev-perl/CGI
+"
+DEPEND="${RDEPEND}
+	>=dev-perl/Module-Build-0.420.0
+"
+SRC_TEST=do
diff --git a/dev-perl/Bio-Graphics/Manifest b/dev-perl/Bio-Graphics/Manifest
new file mode 100644
index 000000000000..8077f0a70da8
--- /dev/null
+++ b/dev-perl/Bio-Graphics/Manifest
@@ -0,0 +1,5 @@
+DIST Bio-Graphics-2.39.tar.gz 1139511 SHA256 5602e56c469fba8be024d72bff7ec1502392d82ac0fde4d1399e02488d6bfd85 SHA512 4119c56a125df67a613833c06d7db94be7f19c39fcf908eb52c403e70652c04d91a3b7de768e2465423bff69dd900cb45f1044ed673eb6228a8ad7516a35471f WHIRLPOOL 30877d7f6c264b833ebcf69dfebc037fdaff66200a80cd7b9bf964b2f435d6d23db7a8f1228c010675955b7528f95fb1d9a018c48fa8a5456e4813d10d7ce76f
+EBUILD Bio-Graphics-2.390.0.ebuild 485 SHA256 f485e1e60bd102653812ae42964210f149cec25a51ab04020c65cbf6ac0e446d SHA512 d2cdcd91b45a9736d0678176d3c2e1feab9d7144275b20bf9e3db0fb9c623139979d066d592cefc1a0a10456da18f85e1aaaafb7c6273af9fd689bece0cb8861 WHIRLPOOL f2eb404fd7c7f8123c244f37007b58b182a812d8f1f1627758532fd7a307f4a252fd8dd2eda95eb12206a6660f0f561a3200835971b0e171f2075e7c8b974663
+MISC ChangeLog 2661 SHA256 955b871bdaeac4b967349058caa40e32e5eb75895c948cd72359002e0ab53b16 SHA512 5280590b23f0cf07fd178aed41502d47c45e63f3d287226fd6240eeb46bf23409fe91c2765a2f32e0eb357a423c7989b1164b5417c56c1901cd2627cfbc31706 WHIRLPOOL d35d8d5d5804a580a557a4180e2b9a91ead4ccbbfe2de4c3d22270440a6b5bf185500fa61201b56ae7ea6cdcbb684c1198474f88ac51c6939424211f763fa1ab
+MISC ChangeLog-2015 6736 SHA256 e86c32fdaab3456dcd89334b874d84a12e4e7bd8853d7faa209724204d99cc6a SHA512 7c1bdc296789c1556fcf674b9f8f85f09a7fd422c5d94a32d2f8de000b58145fc22d93b5011f3d9bfc6cd61b2b09252371b3c8e501cbe669567ac72ef3af64ab WHIRLPOOL ae02d2f9f74816e6c2a3e09caddf12dbaec0a41732682484446cffce230908d7417e85a67ab84b7c7ce7fd052814727b9b7b9e6ecb450aa9c63f643ab339a76c
+MISC metadata.xml 8788 SHA256 a92b4a93a12dec8615bc8d5865dbe72a6c76b2e59f647ea02b3a39384a692e65 SHA512 dc41e35305401b115d59349de36482e37b2c57ddf4c0723a3d2df338bed02a0269853f62b31714e6a7b631e99654e1282cddb71f15aa7c6995073d1d4401cd59 WHIRLPOOL 3fab8e107334fb1fbeb856b563b1c8f522b00d2c657ea8ed2c6ce4c425cdf818513682394051ca81789e8de5609a84eeb7b53d760f743e3c9dd653258e0ce3f4
diff --git a/dev-perl/Bio-Graphics/metadata.xml b/dev-perl/Bio-Graphics/metadata.xml
new file mode 100644
index 000000000000..df06b726cac4
--- /dev/null
+++ b/dev-perl/Bio-Graphics/metadata.xml
@@ -0,0 +1,123 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci@gentoo.org</email>
+    <name>Gentoo Science Project</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>perl@gentoo.org</email>
+    <name>Gentoo Perl Project</name>
+  </maintainer>
+  <upstream>
+    <remote-id type="cpan">Bio-Graphics</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::ConfiguratorI</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::DrawTransmembrane</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Feature</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureBase</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureDir</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureFile</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FeatureFile::Iterator</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::FileSplitter</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::Factory</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::alignment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::allele_tower</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::anchored_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::broken_line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::cds</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::christmas_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::cross</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::crossbox</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dashed_line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::diamond</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dna</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::dumbbell</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ellipse</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ex</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::extending_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::fb_shmiggle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::fixedwidth</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::flag</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::gene</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::generic</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::graded_segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::group</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hat</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heat_map</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heat_map_ideogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::heterogeneous_segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hidden</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::hybrid_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ideogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::image</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::lightning</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::line</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::merge_parts</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::merged_alignment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::minmax</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::operon</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::oval</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pairplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pentagram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::phylo_align</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::pinsertion</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::point_glyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::primers</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::processed_transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::protein</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ragged_ends</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::rainbow_gene</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::read_pair</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::redgreen_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::redgreen_segment</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::repeating_shape</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::rndrect</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ruler_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::saw_teeth</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::scale</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::segmented_keyglyph</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::segments</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::smoothing</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::so_transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::span</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::spectrogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::splice_site</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::stackedplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::ternary_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::text_in_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::three_letters</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::tic_tac_toe</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::toomany</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::trace</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::track</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::transcript</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::transcript2</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::translation</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::triangle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::two_bolts</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::vista_plot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wave</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::weighted_arrow</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::whiskerplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_box</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_data</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_density</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_whiskers</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::wiggle_xyplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Glyph::xyplot</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Layout</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Layout::Contour</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Math</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Panel</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Pictogram</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::RendererI</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Util</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Wiggle</remote-id>
+    <remote-id type="cpan-module">Bio::Graphics::Wiggle::Loader</remote-id>
+  </upstream>
+</pkgmetadata>