reinit the tree, so we can have metadata

7 files changed, 193 insertions, 0 deletions

diff --git a/dev-python/montage-wrapper/Manifest b/dev-python/montage-wrapper/Manifest
new file mode 100644
index 000000000000..7a4980f53747
--- /dev/null
+++ b/dev-python/montage-wrapper/Manifest
@@ -0,0 +1,9 @@
+AUX montage-wrapper-0.9.8-fix_tests.patch 2291 SHA256 f2e6bdf8db4fbd86ad8741669e025ecdcc62561664b93af2c33aad0205d53558 SHA512 1466905009a5dadd1f6cf95ab4b97384d2332cac850f61f8766dc7a9b07454fa1c3840e9b5720325db515e36ee8c321610a7ae1c5c24c0272f2f5fe25eafe226 WHIRLPOOL 5765a9209936bd55a15fe70573b68c439a1fbccf3a6f623e74b24fa4ba798790f2a4735af31c2198ae3bb68b740b5e0b0c48291901e0b3187bc39f27f2d36430
+AUX montage-wrapper-0.9.8-increase_rtol.patch 872 SHA256 045944645b1eb9e96e9770caee05a59944a5972156bcdcdbbb5cd5d6933a4913 SHA512 221f0549abef1a1a7a5d2a6edc47da96c54fecd0fe3d4a762153309523731194bb9254fa352ca88eaa13e0cabeae2913ca5313b2dc4feaba705a9af6df92ff12 WHIRLPOOL 8322d82484289408beaf1fe9f6460df51b1ce3bff55a6506d234373aa51b265c5c1c2c7e56bf94161ba1f27db676aef78e86a173e51f73d20cd4c9f1880bf775
+AUX montage-wrapper-0.9.8-use_configparser.patch 533 SHA256 2c12993a2f59dc9bfeb423a4cc2e1332c4251e6f049ec5b0435f4e2f0e4d16f5 SHA512 ed81511da9665429ffbcf2424db7aefa63f0f0a93932380c3685d90918b30a45970f658a8ef69d860c23f216da473884c816b56ffa49d763a620fabf2997c042 WHIRLPOOL aa3121835b13a1b9114f63e5d88255d6eeaaf7271ebeface7f1268d0f382eab1e341b5af2f114d40fe9f80949c0347ba377ea9144bbfd1879c361e9d083ad48b
+DIST montage-wrapper-0.9.8.tar.gz 208240 SHA256 8f7c468f602e3fa38907e481abaede08fbc4cd17faae0b82d86638c0418aa98e SHA512 a9aeb48f86d055448fdfed3a5c3762b554627db10f1374cbd3f7af6002721ae04e9f47828c2084147be40f79c1c4ce6e56568bf61a6cdd78a31ce91de6365ec1 WHIRLPOOL f224a4fe9dba626700e85a78b309f5db0bf1bac26d27457f6f3eb8a53ae58effbe70043c8c1f311029e36e36082540a9da634821df75366056e9ecb7dbc602f1
+DIST montage-wrapper-0.9.9.tar.gz 187490 SHA256 cdf7722297c95ef0c3065de96636d467cb9db4049298f4df10957d209e64a724 SHA512 a113a9f1ca03ca158ed6d8a4520c6710804a5ac10bae3dd0c0231390f771479c43f0cdd08e302c59ac1d608c4865d4b0d7a3a233ad068d40d3f1c0efbc343533 WHIRLPOOL 7c669455641c11963f0da97fa210efb41324dfba9ffa49f45e68b0ca96747472d1024b56e2a851043eb19362d5e4421e16e17b1cd1b1aabfb6f73d8ea1302ec7
+EBUILD montage-wrapper-0.9.8.ebuild 1146 SHA256 0b65422b7d343972ae2a73b70a6855195d894990f0857c6684e5ea8a76248fc4 SHA512 53bea7dd0c18f1cc88aaa90f8891de82717fa0f533ec2d2b5dbf612d750c2ec8c9972f36dda791fd74eddf197a4016827dffe89ace9cadb27cbb80daedc1421f WHIRLPOOL dafff3d468aa0702147c2a92e3a887558708062afc2b3648c7d85bcb208715b638a06838ada53782c78913c462538b8c42eb4edc9895322f7c988b73aa5b0a01
+EBUILD montage-wrapper-0.9.9.ebuild 989 SHA256 338c4cac8f34d18319140e2ec2dc9f66b51b3da51e6152b8afacb6e8fd88e0f6 SHA512 4c363a10eb6932ca947501e22132acfd9c92389acc69fdb1c1158c13711cc9c9b1946567428fd2f24ce6a2c3d1b85ee32f3b427f51dde55be6c388561f1166ff WHIRLPOOL 182c2fbd910c1b92e5cb38ddd838b89d10f88c37021cf2ea82f3f097392bcc91b9e87a0508a83b0a82ab39de2a2aa8a831b18a3e2c01cf2f885421e80a5e7be3
+MISC ChangeLog 498 SHA256 b94e7e8dd9b9bd4071fa79f7093f6c9b50bb83be284ecab9c2c2c3a1ceac1145 SHA512 14ed7e7222e1f95102ce48262ec470d6d57fcf0ac35f14c57dea163adc531ddbaca221ee095e2c3c3417daa88ee06ab78d90877b08fd0ccd6b3a60b96ef76daf WHIRLPOOL 9bcf4cccb5bb90cd7f8e7929c2189f21c89b1e61793ae9af9ade6eee8e8de55485d02fb53769745f1e538b6d3e34973dbd369965c41825324c55596a3de0fb4f
+MISC metadata.xml 640 SHA256 6c36256138a24f35e784d6c5a84c3f610a91c21eca27890a1df0f26accee2bd3 SHA512 ebc6b77919fd327e395610b3479a1bb84b2457cdd08ba850a0e9098b95284705fea84092eeb2322e51686dd8214cd281b681cbc8d28bc0d99068f73ca685cb83 WHIRLPOOL 2671fa929850062dc33194cc893dd0b027ab0661e024e5abf76a9ee23d0c413f5185ddf0f50846b8c996356b560413b5697e23cc463eb6f16390359115b65018
diff --git a/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-fix_tests.patch b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-fix_tests.patch
new file mode 100644
index 000000000000..8d611b72f81a
--- /dev/null
+++ b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-fix_tests.patch
@@ -0,0 +1,40 @@
+Author: Ole Streicher <olebole@debian.org>
+Description: Make sure that opened FITS files are closed after the test
+--- a/montage_wrapper/tests/test_wrappers.py
++++ b/montage_wrapper/tests/test_wrappers.py
+@@ -46,21 +46,21 @@
+ 
+     def test_mosaic(self):
+         mosaic(os.path.join(self.tmpdir, 'raw'),os.path.join(self.tmpdir, 'mosaic'), hdu=0)
+-        hdu = fits.open(os.path.join(self.tmpdir, 'mosaic', 'mosaic.fits'))[0]
+-        assert hdu.data.shape == (288, 282)
+-        valid = hdu.data[~np.isnan(hdu.data)]
+-        assert len(valid) == 65029
+-        assert_allclose(np.std(valid), 0.12658458001333581, 1e-5)
+-        assert_allclose(np.mean(valid), 0.4995945318627074, 1e-5)
+-        assert_allclose(np.median(valid), 0.5003376603126526, 1e-5)
++        with fits.open(os.path.join(self.tmpdir, 'mosaic', 'mosaic.fits')) as hdu:
++            assert hdu[0].data.shape == (288, 282)
++            valid = hdu[0].data[~np.isnan(hdu[0].data)]
++            assert len(valid) == 65029
++            assert_allclose(np.std(valid), 0.12658458001333581, 1e-5)
++            assert_allclose(np.mean(valid), 0.4995945318627074, 1e-5)
++            assert_allclose(np.median(valid), 0.5003376603126526, 1e-5)
+ 
+     @pytest.mark.xfail()  # results are not consistent on different machines
+     def test_mosaic_background_match(self):
+         mosaic(os.path.join(self.tmpdir, 'raw'),os.path.join(self.tmpdir, 'mosaic_bkgmatch'), background_match=True)
+-        hdu = fits.open(os.path.join(self.tmpdir, 'mosaic_bkgmatch', 'mosaic.fits'))[0]
+-        assert hdu.data.shape == (288, 282)
+-        valid = hdu.data[~np.isnan(hdu.data)]
+-        assert len(valid) == 65029
+-        assert_allclose(np.std(valid), 0.12661606622654725)
+-        assert_allclose(np.mean(valid), 0.4994805202294361)
+-        assert_allclose(np.median(valid), 0.5002447366714478)
++        with fits.open(os.path.join(self.tmpdir, 'mosaic_bkgmatch', 'mosaic.fits')) as hdu:
++            assert hdu[0].data.shape == (288, 282)
++            valid = hdu[0].data[~np.isnan(hdu[0].data)]
++            assert len(valid) == 65029
++            assert_allclose(np.std(valid), 0.12661606622654725)
++            assert_allclose(np.mean(valid), 0.4994805202294361)
++            assert_allclose(np.median(valid), 0.5002447366714478)
diff --git a/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-increase_rtol.patch b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-increase_rtol.patch
new file mode 100644
index 000000000000..285b525a4df5
--- /dev/null
+++ b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-increase_rtol.patch
@@ -0,0 +1,17 @@
+Author: Ole Streicher <olebole@debian.org>
+Description: Increase rtol of asserts to let the tests succeed with montage-4.0
+--- a/montage_wrapper/tests/test_wrappers.py
++++ b/montage_wrapper/tests/test_wrappers.py
+@@ -50,9 +50,9 @@
+         assert hdu.data.shape == (288, 282)
+         valid = hdu.data[~np.isnan(hdu.data)]
+         assert len(valid) == 65029
+-        assert_allclose(np.std(valid), 0.12658458001333581)
+-        assert_allclose(np.mean(valid), 0.4995945318627074)
+-        assert_allclose(np.median(valid), 0.5003376603126526)
++        assert_allclose(np.std(valid), 0.12658458001333581, 1e-5)
++        assert_allclose(np.mean(valid), 0.4995945318627074, 1e-5)
++        assert_allclose(np.median(valid), 0.5003376603126526, 1e-5)
+ 
+     @pytest.mark.xfail()  # results are not consistent on different machines
+     def test_mosaic_background_match(self):
diff --git a/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-use_configparser.patch b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-use_configparser.patch
new file mode 100644
index 000000000000..082c3678e125
--- /dev/null
+++ b/dev-python/montage-wrapper/files/montage-wrapper-0.9.8-use_configparser.patch
@@ -0,0 +1,18 @@
+Author: Vincent Prat <vinceprat@free.fr>
+Description: Use ConfigParser module instead of the one embedded in distutils.config
+--- a/setup.py
++++ b/setup.py
+@@ -21,8 +21,11 @@
+ from astropy_helpers.version_helpers import generate_version_py
+ 
+ # Get some values from the setup.cfg
+-from distutils import config
+-conf = config.ConfigParser()
++try:
++    from configparser import ConfigParser
++except:
++    from ConfigParser import ConfigParser
++conf = ConfigParser()
+ conf.read(['setup.cfg'])
+ metadata = dict(conf.items('metadata'))
+ 
diff --git a/dev-python/montage-wrapper/metadata.xml b/dev-python/montage-wrapper/metadata.xml
new file mode 100644
index 000000000000..aa3e481c13e8
--- /dev/null
+++ b/dev-python/montage-wrapper/metadata.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-astronomy@gentoo.org</email>
+    <name>Gentoo Astronomy Project</name>
+  </maintainer>
+  <longdescription>
+  This Astropy-affiliated package provides a python wrapper to the
+  Montage Astronomical Image Mosaic Engine, including both functions to
+  access individual Montage commands, and high-level functions to
+  facilitate mosaicking and re-projecting.
+</longdescription>
+  <upstream>
+    <remote-id type="pypi">montage-wrapper</remote-id>
+  </upstream>
+</pkgmetadata>
diff --git a/dev-python/montage-wrapper/montage-wrapper-0.9.8.ebuild b/dev-python/montage-wrapper/montage-wrapper-0.9.8.ebuild
new file mode 100644
index 000000000000..4dfca3796e6c
--- /dev/null
+++ b/dev-python/montage-wrapper/montage-wrapper-0.9.8.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python wrapper for the Montage mosaicking toolkit"
+HOMEPAGE="http://www.astropy.org/montage-wrapper/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc test"
+
+RDEPEND="
+	dev-python/astropy[${PYTHON_USEDEP}]
+	sci-astronomy/montage"
+DEPEND="
+	dev-python/astropy[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	test? ( sci-astronomy/montage )"
+
+PATCHES=(
+	"${FILESDIR}/${P}-increase_rtol.patch"
+	"${FILESDIR}/${P}-fix_tests.patch"
+	"${FILESDIR}/${P}-use_configparser.patch"
+)
+
+python_prepare_all() {
+	# use system astropy-helpers instead of bundled one
+	sed -i -e '/auto_use/s/True/False/' setup.cfg || die
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	use doc && PYTHONPATH=".." emake -C docs html
+}
+
+python_test() {
+	${EPYTHON} setup.py test
+}
+
+python_install_all() {
+	use doc && HTML_DOCS=( docs/_build/html/. )
+	distutils-r1_python_install_all
+}
diff --git a/dev-python/montage-wrapper/montage-wrapper-0.9.9.ebuild b/dev-python/montage-wrapper/montage-wrapper-0.9.9.ebuild
new file mode 100644
index 000000000000..409d24f27653
--- /dev/null
+++ b/dev-python/montage-wrapper/montage-wrapper-0.9.9.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python wrapper for the Montage mosaicking toolkit"
+HOMEPAGE="http://www.astropy.org/montage-wrapper/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc test"
+
+RDEPEND="
+	dev-python/astropy[${PYTHON_USEDEP}]
+	sci-astronomy/montage"
+DEPEND="
+	dev-python/astropy[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	test? ( sci-astronomy/montage )"
+
+python_prepare_all() {
+	# use system astropy-helpers instead of bundled one
+	sed -i -e '/auto_use/s/True/False/' setup.cfg || die
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	if use doc; then
+		PYTHONPATH=".." emake -C docs html
+		HTML_DOCS=( docs/_build/html/. )
+	fi
+}
+
+python_test() {
+	esetup.py test || die "tests failed with ${EPYTHON}"
+}