gentoo auto-resync : 20:03:2024 - 19:00:10

2 files changed, 157 insertions, 0 deletions

diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index d47e0978f0a9..52ec4ec8d5be 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,9 +1,11 @@
 DIST scipy-1.11.3.tar.gz 56335652 BLAKE2B 2b35c24522b2bd498b4ebe84a854c8ec1e62917e7b899b3e3526abb9780c1e56f8e776a3bb1eab1bedb17a273fac881e5ffdaac808084a4f5a5f97428bff1029 SHA512 6491c4e479d9f4f02e677396a25ddca947a0dc6c009fc2ec34c658012a6224c0b535f14045bb011fbde9973ea987d184574ed64e6760c31798ec860eb0896fcf
 DIST scipy-1.11.4.tar.gz 56336202 BLAKE2B a2091a1edb54eb73c2de6ed8c62a7e571f37b247c9af50947aa97b739342c96b87b20a82b1a238c859fa532c84249cbadde228366dcea3555e9a506c1ae55031 SHA512 2eb403f6de9723b411d948b8e1b5457078704c605b8e760d42362c82d802e167eaaf701ddb8b480af2bdf2efe4dbf66fcc4e97321519bb8dab19b0e2a8976beb
 DIST scipy-1.12.0.tar.gz 56811768 BLAKE2B 03c142274f1466747935fa54fab427f3a48c1642406211fa1a0f8ad5e0f194baecf76182e0448a0fb647063871483239cd876ce431cd9406e396e6170912ab64 SHA512 376ed94c4caaf782814bb07047fff0b363f7b608a0399697c6e862432333cbe6d3abb351730a574a3f077b3cdd9cb7474090a460baffcfbd5546bcfee309b6e7
+DIST scipy-1.13.0rc1.tar.gz 57201979 BLAKE2B 0e257dbe3707b373045eef21384f64847017ffd281e41acb4358e90fec7be5983462849fb199e0bf2ae7944d2a1511c181bd4b1d0ba01f8691062fb9fdebd689 SHA512 de03fdd61bde610bebe7ede8ef22c72e2f65f68e3584b70069b59539a1453a0f1b34baa065ff3cbcb109d3e9a02c705a964116ca11d85700c58ad094772962e2
 DIST scipy-html-1.11.0.zip 50421508 BLAKE2B cb5e4a4f8817a80f54ae73b4a47ba22d2438df46ebfe27ef5fdc2695fdd983226f4ccae925bf82b15d01ced4f4b6807384ecadac5e1aa7700aa887ad06b7d065 SHA512 33718bbd5e828687d93fccc441a53b6a2e8f54ac4952d3b69d4c4668f55cb6ef5aba33df9acda20b2400effa5ae71767b2a5602a365ad2045a6edd24ff89c253
 DIST scipy-html-1.11.2.zip 50435722 BLAKE2B 460c67509a8bf50986f866ee2f90e634af21ddd71508efeef5681c2ee2130c3f79b4b428bc21277bfb310bb45ccad1fb38221ada43620055377cdc4839b9d1e5 SHA512 986a6e37f9e01dc4925ef22af6ff660bae1e4b66e57270262974c207dfb70285e3f8f548774d6e81d5f457b9198c0ba1c06e6d689fe5d54fdea878c1e5a7f797
 EBUILD scipy-1.11.3-r1.ebuild 3646 BLAKE2B 4b1ad2969bce3110bb1734c3ed19393c6aa381205924c1f4a914ef31c63ee267660f67503b20f739fe8012d9dd4755f8ba11637bab7c41e2bb86c47098bf9f4c SHA512 b2cbf391998945662d69515dfb275837067bd9e011e038c0f63ae9314e4d3b2d22f9658f70a61a7b493e99cfdc3454e16367b7793d05f2c02b53943f6cc70fe4
 EBUILD scipy-1.11.4.ebuild 3658 BLAKE2B b7c48e8a930fb4316e872fc79674dc01e4d108f96eed892996b2b2ce3f1bc935a50cd21a1b9a17e72ac7e23ae5fdff202d3b9c24bf0d883516381225939ba326 SHA512 d5382769130b623ce7e80f16074bc6bff21078c1431d53081c4a2ff6372950c7123850ac9e464f1697047e76fdbf5e31c4317ce4ce50e0a8d78d082ec279cc71
 EBUILD scipy-1.12.0.ebuild 3618 BLAKE2B d74aa2ddeeeb65cb3e35f68994dc07ba9d2eb14608aa853eea03439a54fb2ad98d248ec45072d76f665216ec543db1e7cccce44d201bada81fe8da3277ebe856 SHA512 1b0876e55c478859580dd8eebb9e2716c46ffa02a1536b59ec84bba1a6955324d50477dd531b8606e617582ed7ac184d23266f8e3d9afc071c56a6e9bb1bcefb
+EBUILD scipy-1.13.0_rc1.ebuild 3786 BLAKE2B 5a34f58ed38413a2afd57bae3dae33afa07ba8f614e7e4dd9d9a2815446db8e4ffa8f521238f73bdbc3ec0fc5a6d99fe7ceab1e265e0e637283d8cc86c339b86 SHA512 5ad04a9d868102a3875827de033a799451bd8e6d5a18b91acc6a673afcc5c734a4cb3ae2ecbf56518cb3b614e398d2d6e3b36bb08eb1a596edabd961975016cc
 MISC metadata.xml 953 BLAKE2B a09ea1325a175e349fbc3ca77c5e7b373538ea01147e8544f44b7d4e0c55fbbc2012431fcfe9a3457e82d295e4b5630df1ed69c48ef3462ed9b157af30a1e09a SHA512 74a21c6e1a9bef95b3d74a9513c59d302f473725c04fa32a9991b6108113c0f4b78179ce4a628140e7aa870c24ca60bddf7a00063b6b73dd45110112311371d8
diff --git a/dev-python/scipy/scipy-1.13.0_rc1.ebuild b/dev-python/scipy/scipy-1.13.0_rc1.ebuild
new file mode 100644
index 000000000000..37560902441b
--- /dev/null
+++ b/dev-python/scipy/scipy-1.13.0_rc1.ebuild
@@ -0,0 +1,155 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+FORTRAN_NEEDED=fortran
+DISTUTILS_EXT=1
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( pypy3 python3_{10..12} )
+PYTHON_REQ_USE="threads(+)"
+
+inherit flag-o-matic fortran-2 distutils-r1
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="
+	https://scipy.org/
+	https://github.com/scipy/scipy/
+	https://pypi.org/project/scipy/
+"
+
+if [[ ${PV} == *9999* ]] ; then
+	inherit git-r3
+
+	# Need submodules, so git for now.
+	EGIT_REPO_URI="https://github.com/scipy/scipy"
+	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
+	EGIT_SUBMODULES=( '*' )
+else
+	inherit pypi
+
+	# Upstream is often behind with doc updates
+	#DOC_PV=${PV}
+	DOC_PV=1.11.2
+
+	SRC_URI+="
+		doc? (
+			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
+		)"
+
+	if [[ ${PV} != *rc* ]] ; then
+		KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
+	fi
+fi
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc +fortran test-rust"
+
+# umfpack is technically optional but it's preferred to have it available.
+DEPEND="
+	>=dev-python/numpy-1.22.4[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack:=
+	sci-libs/umfpack
+	virtual/cblas
+	>=virtual/lapack-3.8
+"
+RDEPEND="
+	${DEPEND}
+	dev-python/pillow[${PYTHON_USEDEP}]
+"
+BDEPEND="
+	dev-lang/swig
+	>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
+	>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
+	>=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
+	>=dev-build/meson-1.1.0
+	!kernel_Darwin? ( dev-util/patchelf )
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	fortran? ( >=dev-python/pythran-0.14.0[${PYTHON_USEDEP}] )
+	test? (
+		>=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
+	)
+	test-rust? (
+		dev-python/pooch[${PYTHON_USEDEP}]
+	)
+"
+
+EPYTEST_XDIST=1
+distutils_enable_tests pytest
+
+src_unpack() {
+	default
+
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+python_configure_all() {
+	# https://github.com/scipy/scipy/pull/19857
+	# Fixed in 1.13.0
+	filter-lto
+	DISTUTILS_ARGS=(
+		-Dblas=blas
+		-Dlapack=lapack
+		-Duse-pythran=$(usex fortran true false)
+	)
+}
+
+python_test() {
+	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+
+	local EPYTEST_DESELECT=(
+		# Network
+		scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
+		scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
+		scipy/datasets/tests/test_data.py::TestDatasets::test_face
+		scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
+
+		# Precision issue with diff. blas?
+		scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
+
+		# Crashes with assertion, not a regression
+		# https://github.com/scipy/scipy/issues/19321
+		scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
+
+		# timeouts
+		scipy/sparse/linalg/tests/test_propack.py::test_examples
+		# hang or incredibly slow
+		scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
+		scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
+
+		# TODO
+		scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
+	)
+	local EPYTEST_IGNORE=()
+
+	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
+		EPYTEST_IGNORE+=(
+			scipy/datasets/tests/test_data.py
+		)
+	fi
+
+	case ${EPYTHON} in
+		pypy3)
+			EPYTEST_DESELECT+=(
+				# fd leaks in tests
+				# https://github.com/scipy/scipy/issues/19553
+				scipy/fft/_pocketfft/tests/test_real_transforms.py
+				# TODO
+				'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
+			)
+			;;
+	esac
+
+	local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
+	epytest scipy
+}
+
+python_install_all() {
+	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
+
+	distutils-r1_python_install_all
+}