gentoo auto-resync : 27:06:2023 - 13:35:02

3 files changed, 199 insertions, 0 deletions

diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index d0d430224d93..ac02fcac2ac8 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,7 +1,9 @@
+AUX scipy-1.11.0-determinant-1x1-matrix.patch 2757 BLAKE2B a91cf26f38f7b783a98b0664f959ca2da9a0c7eb746c4e5d325562d6395eb239761049686671e5dd1e785652b582b59091026cc6c5cbae7070f18731f50d9f84 SHA512 35e2e7f650bc97a84d9a69e2985e71b43bdb984ceed098fefd16e3faef65cc8e5d31761fcbe5c826072e76956f619e87d1a154e159c283e0c9f6679402d5e1d5
 DIST scipy-1.10.1.tar.gz 42407997 BLAKE2B 807dceb1e056a1a2c0ec354e4e21f64e59cdab9eaf286cec3783bb93bf80efa00a71e7bd8d1898e8a2fdf86b614f035a0a97436dc4515574d73d9d4521824316 SHA512 767e1dee6285d98e4d58d8d8d1e3654b00e3216e9ad55455fc9473f1d044bef80ecce749bcd24d8f331367b882c9c3e6b652a6e901bb4296ddc7cc44699215b6
 DIST scipy-1.11.0.tar.gz 56030121 BLAKE2B e700bf8f9cffa7bc0f4832722010dcf2e03d8f93d13534f7f85734394c02536c1427cae5a097b59616f0873ba941579fcf2efd0baafc2037d9eca1f93362d38b SHA512 248cfbbedba73925b0461bf0f96c4a11bd4cfc7849cb18c58f6405074796ab0efdc4f056c58d344cb8833c0d2c6425f84e7ac6fe958cf98b1cc0bf16e7ff2444
 DIST scipy-html-1.10.1.zip 49191107 BLAKE2B 5163ae3a62745992bcf94ab02ca2bb13fcf6d2ae0eb2a113ba29bc37a8e8f40ec70e39fe16e6371ce0bc31d4c8f0f46746be91b4fe2ad41c68a985c6f00fb8e7 SHA512 f3252452d3bfd400890f29460de2f97bf72732e0fc864582e906b78808e856ead5b1bf97cba531f2150e396408e585499d127004231421d20108e96040316232
 DIST scipy-html-1.11.0.zip 50421508 BLAKE2B cb5e4a4f8817a80f54ae73b4a47ba22d2438df46ebfe27ef5fdc2695fdd983226f4ccae925bf82b15d01ced4f4b6807384ecadac5e1aa7700aa887ad06b7d065 SHA512 33718bbd5e828687d93fccc441a53b6a2e8f54ac4952d3b69d4c4668f55cb6ef5aba33df9acda20b2400effa5ae71767b2a5602a365ad2045a6edd24ff89c253
 EBUILD scipy-1.10.1.ebuild 2662 BLAKE2B dec183f49fdfc327173ad0a5ae329cf9621662f08f116a16d3048004b1de25e535b0ba5edaad8c21ffee328cbdc9eb233f2494dc99ab24a687bb21ca7699925a SHA512 ee9bf4e78a98402d4ea0658af6d45428144a5ddca988583421abc1d992ac7e38c3ef3dab4500ac09ac103c6e5e7190c7d4e1d7036bbe26c4572463edfbefc066
+EBUILD scipy-1.11.0-r1.ebuild 2850 BLAKE2B eb201e9c497d0262cd1416b9f9f90fc9c84195595e348ffc1341457922add3482b16577d7bbb48017d3bce1883c69ee4545fc30e6fabe8410d3e5113e56286ff SHA512 d703ab7e30a83a720cb4a3568a841e5348e021b5542b708483731894b4f7bb16e0b9cce1a93fad84f558b2b3fb812528fb72a6812b9dc888f89d853898aefb06
 EBUILD scipy-1.11.0.ebuild 2788 BLAKE2B 5ed5993b046a177228cc67096e20dacd5ba760f94db41d3df741b3473858ccc3828f272b880fe004824084d13775be17b4c57487f78bd703461a983ead7a2ccd SHA512 8d0cd0d692fe8b4c2575810e5a9cbc3eebe7db4f54d10521e5bd023dc9e0a596ee689c016cf9b1c5a93d5fbb9ce08cf6fc1edce12638cd225cbcd5a94c3a2586
 MISC metadata.xml 953 BLAKE2B a09ea1325a175e349fbc3ca77c5e7b373538ea01147e8544f44b7d4e0c55fbbc2012431fcfe9a3457e82d295e4b5630df1ed69c48ef3462ed9b157af30a1e09a SHA512 74a21c6e1a9bef95b3d74a9513c59d302f473725c04fa32a9991b6108113c0f4b78179ce4a628140e7aa870c24ca60bddf7a00063b6b73dd45110112311371d8
diff --git a/dev-python/scipy/files/scipy-1.11.0-determinant-1x1-matrix.patch b/dev-python/scipy/files/scipy-1.11.0-determinant-1x1-matrix.patch
new file mode 100644
index 000000000000..248ee5299f2c
--- /dev/null
+++ b/dev-python/scipy/files/scipy-1.11.0-determinant-1x1-matrix.patch
@@ -0,0 +1,69 @@
+https://github.com/scipy/scipy/issues/18759
+https://github.com/scipy/scipy/pull/18763
+https://github.com/scipy/scipy/commit/61d892c9faa543ad80bd5e2d0bf69821188487e0
+
+From 61d892c9faa543ad80bd5e2d0bf69821188487e0 Mon Sep 17 00:00:00 2001
+From: Ilhan Polat <ilhanpolat@gmail.com>
+Date: Tue, 27 Jun 2023 12:00:38 +0200
+Subject: [PATCH] MAINT:linalg.det:Return scalars for singleton inputs (#18763)
+
+--- a/scipy/linalg/_basic.py
++++ b/scipy/linalg/_basic.py
+@@ -1001,7 +1001,8 @@ def det(a, overwrite_a=False, check_finite=True):
+     det : (...) float or complex
+         Determinant of `a`. For stacked arrays, a scalar is returned for each
+         (m, m) slice in the last two dimensions of the input. For example, an
+-        input of shape (p, q, m, m) will produce a result of shape (p, q).
++        input of shape (p, q, m, m) will produce a result of shape (p, q). If
++        all dimensions are 1 a scalar is returned regardless of ndim.
+ 
+     Notes
+     -----
+@@ -1066,11 +1067,17 @@ def det(a, overwrite_a=False, check_finite=True):
+ 
+     # Scalar case
+     if a1.shape[-2:] == (1, 1):
+-        if a1.dtype.char in 'dD':
+-            return np.squeeze(a1)
++        # Either ndarray with spurious singletons or a single element
++        if max(*a1.shape) > 1:
++            temp = np.squeeze(a1)
++            if a1.dtype.char in 'dD':
++                return temp
++            else:
++                return (temp.astype('d') if a1.dtype.char == 'f' else
++                        temp.astype('D'))
+         else:
+-            return (np.squeeze(a1).astype('d') if a1.dtype.char == 'f' else
+-                    np.squeeze(a1).astype('D'))
++            return (np.float64(a1.item()) if a1.dtype.char in 'fd' else
++                    np.complex128(a1.item()))
+ 
+     # Then check overwrite permission
+     if not _datacopied(a1, a):  # "a"  still alive through "a1"
+--- a/scipy/linalg/tests/test_basic.py
++++ b/scipy/linalg/tests/test_basic.py
+@@ -930,6 +930,23 @@ class TestDet:
+     def setup_method(self):
+         self.rng = np.random.default_rng(1680305949878959)
+ 
++    def test_1x1_all_singleton_dims(self):
++        a = np.array([[1]])
++        deta = det(a)
++        assert deta.dtype.char == 'd'
++        assert np.isscalar(deta)
++        assert deta == 1.
++        a = np.array([[[[1]]]], dtype='f')
++        deta = det(a)
++        assert deta.dtype.char == 'd'
++        assert np.isscalar(deta)
++        assert deta == 1.
++        a = np.array([[[1 + 3.j]]], dtype=np.complex64)
++        deta = det(a)
++        assert deta.dtype.char == 'D'
++        assert np.isscalar(deta)
++        assert deta == 1.+3.j
++
+     def test_1by1_stacked_input_output(self):
+         a = self.rng.random([4, 5, 1, 1], dtype=np.float32)
+         deta = det(a)
diff --git a/dev-python/scipy/scipy-1.11.0-r1.ebuild b/dev-python/scipy/scipy-1.11.0-r1.ebuild
new file mode 100644
index 000000000000..f3c49aa6ef84
--- /dev/null
+++ b/dev-python/scipy/scipy-1.11.0-r1.ebuild
@@ -0,0 +1,128 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+FORTRAN_NEEDED=fortran
+DISTUTILS_EXT=1
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( python3_{10..11} )
+PYTHON_REQ_USE="threads(+)"
+
+inherit fortran-2 distutils-r1 multiprocessing
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="
+	https://scipy.org/
+	https://github.com/scipy/scipy/
+	https://pypi.org/project/scipy/
+"
+
+if [[ ${PV} == *9999* ]] ; then
+	inherit git-r3
+
+	# Need submodules, so git for now.
+	EGIT_REPO_URI="https://github.com/scipy/scipy"
+	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
+	EGIT_SUBMODULES=( '*' )
+else
+	inherit pypi
+
+	# Upstream is often behind with doc updates
+	DOC_PV=${PV}
+
+	SRC_URI+="
+		doc? (
+			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
+		)"
+
+	if [[ ${PV} != *rc* ]] ; then
+		KEYWORDS="~amd64 ~arm ~arm64 -hppa ~ia64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
+	fi
+fi
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc +fortran test-rust"
+
+# umfpack is technically optional but it's preferred to have it available.
+DEPEND="
+	>=dev-python/numpy-1.21.6[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack:=
+	sci-libs/umfpack
+	virtual/cblas
+	>=virtual/lapack-3.8
+"
+RDEPEND="
+	${DEPEND}
+	dev-python/pillow[${PYTHON_USEDEP}]
+"
+BDEPEND="
+	dev-lang/swig
+	>=dev-python/cython-0.29.35[${PYTHON_USEDEP}]
+	>=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}]
+	>=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
+	>=dev-util/meson-1.1.0
+	dev-util/patchelf
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
+	test? (
+		dev-python/pytest-xdist[${PYTHON_USEDEP}]
+	)
+	test-rust? (
+		dev-python/pooch[${PYTHON_USEDEP}]
+	)
+"
+
+distutils_enable_tests pytest
+
+PATCHES=(
+	"${FILESDIR}"/${P}-determinant-1x1-matrix.patch
+)
+
+src_unpack() {
+	default
+
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+python_configure_all() {
+	DISTUTILS_ARGS=(
+		-Dblas=blas
+		-Dlapack=lapack
+		-Duse-pythran=$(usex fortran true false)
+	)
+}
+
+python_test() {
+	cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
+
+	local EPYTEST_DESELECT=(
+		# Network
+		scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
+		scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
+		scipy/datasets/tests/test_data.py::TestDatasets::test_face
+		scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
+
+		# Precision issue with diff. blas?
+		scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
+	)
+	local EPYTEST_IGNORE=()
+
+	if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
+		EPYTEST_IGNORE+=(
+			scipy/datasets/tests/test_data.py
+		)
+	fi
+
+	epytest -n "$(makeopts_jobs)" scipy
+}
+
+python_install_all() {
+	use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
+
+	distutils-r1_python_install_all
+}