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authorV3n3RiX <venerix@koprulu.sector>2024-07-14 12:27:14 +0100
committerV3n3RiX <venerix@koprulu.sector>2024-07-14 12:27:14 +0100
commitf7adcd4ee556b2c3a420239c13fb74113d791f6a (patch)
tree1cc566bbd03612996262177e95152bdda507cca9 /dev-python/scipy
parent482a48c0e1675b1e92663b8b5222bb7261aa7956 (diff)
gentoo auto-resync : 14:07:2024 - 12:27:13
Diffstat (limited to 'dev-python/scipy')
-rw-r--r--dev-python/scipy/Manifest17
-rw-r--r--dev-python/scipy/files/scipy-1.13.1-test.patch46
-rw-r--r--dev-python/scipy/scipy-1.11.3-r2.ebuild150
-rw-r--r--dev-python/scipy/scipy-1.11.4-r1.ebuild150
-rw-r--r--dev-python/scipy/scipy-1.12.0-r1.ebuild151
-rw-r--r--dev-python/scipy/scipy-1.13.0.ebuild166
-rw-r--r--dev-python/scipy/scipy-1.13.1.ebuild171
-rw-r--r--dev-python/scipy/scipy-1.14.0.ebuild2
8 files changed, 2 insertions, 851 deletions
diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index e2607c35f39a..b3599581a3ed 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,19 +1,4 @@
-AUX scipy-1.13.1-test.patch 1986 BLAKE2B 6396b59a77c4c703026992304abd7c3700cbb5eb1f82f1c866e2ea1cba3c94809a52786176fb487c9aa17b9d672d03972ccca1a996c5eb8008a280fcf3c46128 SHA512 7678e8b4057452debff3f629b47f575ebdc05e527c311b14c4d7a59df06898e77872349ac873be4b711e7a50b2010faf48aed30e940eab145070b6704f4a2e9a
-DIST scipy-1.11.3.tar.gz 56335652 BLAKE2B 2b35c24522b2bd498b4ebe84a854c8ec1e62917e7b899b3e3526abb9780c1e56f8e776a3bb1eab1bedb17a273fac881e5ffdaac808084a4f5a5f97428bff1029 SHA512 6491c4e479d9f4f02e677396a25ddca947a0dc6c009fc2ec34c658012a6224c0b535f14045bb011fbde9973ea987d184574ed64e6760c31798ec860eb0896fcf
-DIST scipy-1.11.4.tar.gz 56336202 BLAKE2B a2091a1edb54eb73c2de6ed8c62a7e571f37b247c9af50947aa97b739342c96b87b20a82b1a238c859fa532c84249cbadde228366dcea3555e9a506c1ae55031 SHA512 2eb403f6de9723b411d948b8e1b5457078704c605b8e760d42362c82d802e167eaaf701ddb8b480af2bdf2efe4dbf66fcc4e97321519bb8dab19b0e2a8976beb
-DIST scipy-1.12.0.tar.gz 56811768 BLAKE2B 03c142274f1466747935fa54fab427f3a48c1642406211fa1a0f8ad5e0f194baecf76182e0448a0fb647063871483239cd876ce431cd9406e396e6170912ab64 SHA512 376ed94c4caaf782814bb07047fff0b363f7b608a0399697c6e862432333cbe6d3abb351730a574a3f077b3cdd9cb7474090a460baffcfbd5546bcfee309b6e7
-DIST scipy-1.13.0.tar.gz 57204550 BLAKE2B cfbb4e76efae952854e9ff4ed254e9819b58d224906e1ded3c6a914b1e28b5fad15f8bbbb4a9c413969d6e4b1faf4e0038a36729171ff06e640b241a9dd4af94 SHA512 9bd6fd3f76742a07e5bb003edf4c0e3a82edf749077502fbce3d16fe595d455846edcf57db12ec0a9d4792803e974355362d919047414badfcaededf1e4343f7
-DIST scipy-1.13.1.tar.gz 57210720 BLAKE2B d58d673de9b8d6239a3de285982d65ba1baf0ca8b623276c19b85b1f4bb83c56e66c32d7a22d1d602435cfa086b5d56167cac55bdda608590aaddf677844f060 SHA512 28aafdbcae7229a3d11f192683b703cb485d45e4d90413d6564df3d9005bc8fd4df8bd92caffe657666828cd7253e7e0363c0948c74a1b8f3f3b7d4f4cfd9b36
DIST scipy-1.14.0.tar.gz 58618870 BLAKE2B bf9ed05628b02dc058555402995caae722cf6802bde80387d4e4477ec533589a66ca70b5dd44a32ddac652c7c69300406434b80e7cbc9aee2a78ae6b26ee4c2b SHA512 6579d988a2093602f5fc82203bbb5dc5690a95032484b5d5bd843d1e7995b3b89d802c7b38ec0345c1f3d8e22c98fb92b3982a1eadfcdf63607f929a52b56abf
-DIST scipy-html-1.11.0.zip 50421508 BLAKE2B cb5e4a4f8817a80f54ae73b4a47ba22d2438df46ebfe27ef5fdc2695fdd983226f4ccae925bf82b15d01ced4f4b6807384ecadac5e1aa7700aa887ad06b7d065 SHA512 33718bbd5e828687d93fccc441a53b6a2e8f54ac4952d3b69d4c4668f55cb6ef5aba33df9acda20b2400effa5ae71767b2a5602a365ad2045a6edd24ff89c253
-DIST scipy-html-1.11.2.zip 50435722 BLAKE2B 460c67509a8bf50986f866ee2f90e634af21ddd71508efeef5681c2ee2130c3f79b4b428bc21277bfb310bb45ccad1fb38221ada43620055377cdc4839b9d1e5 SHA512 986a6e37f9e01dc4925ef22af6ff660bae1e4b66e57270262974c207dfb70285e3f8f548774d6e81d5f457b9198c0ba1c06e6d689fe5d54fdea878c1e5a7f797
-DIST scipy-html-1.13.0.zip 65327245 BLAKE2B 5e5ffbf4ff4a28c5a003da0e5170ef5eef1b430ecca0284a89aed5f96f7afc549db001beb2e56b3debbd3527c57b773b25c35579b32d8a6d8e5e97a75db4d38b SHA512 792c32f077d76d47e42d02c5047990a6afdcdc9c31dcc7e9987e7a5aa62c56aec44dcf7d14e3f94ae59f8fb718ce89a2835b87d2aef7a16ce9a534361b7329d7
-DIST scipy-html-1.13.1.zip 65288062 BLAKE2B 4eea1277870fcc0070d543139ef8b786d3c6841835601eb5447fed042d03035edfb556f824ccbf9946f1efa41da75372df1dd3789d045bdbaea7e156010bb8e6 SHA512 fc70eb7fa3763e40f2389ad31e1a78fcd2aa1b3db40927f57a583692143001c8b6a8f3f0ddea47eaf62adb30d1207765d8887a2a53baa1b8ed706b7fb348bbbf
DIST scipy-html-1.14.0.zip 65723829 BLAKE2B ba47dbf00a5d2a53a9addc5ea68ab18b42f211a018b89aa4b0b57ff0dee02e410a3effc59ddf8fbbc5aa33075d45d86880aed3a14068da5bd7b62ee526199967 SHA512 93be0bafcc64cea1ba130bbcc77c0741acc4f819c84a5030391a22657a1bc63abe8434a2723f66b7ad04c0809dc6d02e3a97ffb8d94bd3d4a4bb759ee796b475
-EBUILD scipy-1.11.3-r2.ebuild 3648 BLAKE2B 261622d24c0f045e1101ece7b5615714e0c78738294c027d89e0baafba4f9ecf10b0e8070ebfcdafc7a06cf5ccae780d2fe7174530ae384f1e6fcb5ba06ac787 SHA512 6ff8e47c1b90fc6942a0d55e44621dd6e8d442e0af68e6c6878346243dd6e94c7b70bed8908dc624896cd9185778ba4897721fc828074b93bae442c041cd3091
-EBUILD scipy-1.11.4-r1.ebuild 3660 BLAKE2B e5e7918bf5f1abfaa9d2fdec01b5c52d4e0204854326c488b0c68652c295feb9e7d4cd55f4cf0f56b4ecaf4b8cdf89bf2ce788fc1133bedaf6276518a6b861ad SHA512 f761a1cce91457cdc8e8f25298ce62390e1d4beae4b93a5722218988796f28b5b88aaa98bab3d97afbcf1f08ceef72e12e7917fe4e387183e0068c309c641966
-EBUILD scipy-1.12.0-r1.ebuild 3620 BLAKE2B c5c8dfd752b81e16f61a25beabb20a20b3d9087b1a6c514fd7f8d3710435d68b49ad55ba2f082e468a9066f4ad1bff664036c073cfb48cf16d09fcb0b1fafb13 SHA512 e2ebf0e8d464306b0d12b4e831cd7c253b2431fa922d4276c516238d93c4b1f0b0275a3354b31428e9bc43e05eafaf67f92a6b481d9be941421693687bdb513f
-EBUILD scipy-1.13.0.ebuild 4168 BLAKE2B 69ff580f5b92bdcc72fce07810d00c4b1689f66c758ac519b2368c9e05e516e794f124632f7b598899f676e866f1aca6e98708dfd8fea94bfef04b8d69ad7aa7 SHA512 4d92a3499809ee17e06df6ccb89871c299cf1ba7878e68df10de280af52e610cef206f7f1c1ef80d3b349f2ec256d9211a44e20c35d3db349dd035a83c486e95
-EBUILD scipy-1.13.1.ebuild 4255 BLAKE2B 62d38e85bf39d7fa1983a8cd002fbb86aca65ece2462664dcc2231b6e5063b1253789056ce308190e0d567728fa8300f47e9fbd157f9f516040496a5bf4a65ed SHA512 f0c23dbab31789b7c116dc87fc0c80e5b7da240206f120e401de5d11dd05459bcbb15de6411cc4ddbd4db20f7850800e2cd4123c04158be677e33b095441a9eb
-EBUILD scipy-1.14.0.ebuild 4551 BLAKE2B a4b17b854f26603ca980205808f44d8703d6f8169d21024bb1ffdba72473d7e6a65f2914c9d67b6838d54a21e7d76e43c421a33b59f1bd023a4bc6970e903b65 SHA512 c54921917e50f8c87fd225c3a2e381a5d87ca78263a3716b4528476dc4e593aa82ae8229248a8ae63e85da564b4c4efd9836a2567ee6034e367c14b4f7fe9fae
+EBUILD scipy-1.14.0.ebuild 4547 BLAKE2B f194df24edb371dc53abca65d483e80dca52a402a5f6e9b7cdea4419431243e97c1e77de93664a22a068006d09babfaa120befdedc6568a123f77552dcd51856 SHA512 9d22b43d4676b3f35c75be0e023c652acd1ca5741b9c8c3a05ece1f939f9576a5f9b2bca47f051fe4882ed0b36a15ed0a612fd394461f0d71cc73ce6642deaed
MISC metadata.xml 953 BLAKE2B a09ea1325a175e349fbc3ca77c5e7b373538ea01147e8544f44b7d4e0c55fbbc2012431fcfe9a3457e82d295e4b5630df1ed69c48ef3462ed9b157af30a1e09a SHA512 74a21c6e1a9bef95b3d74a9513c59d302f473725c04fa32a9991b6108113c0f4b78179ce4a628140e7aa870c24ca60bddf7a00063b6b73dd45110112311371d8
diff --git a/dev-python/scipy/files/scipy-1.13.1-test.patch b/dev-python/scipy/files/scipy-1.13.1-test.patch
deleted file mode 100644
index e10e8551b757..000000000000
--- a/dev-python/scipy/files/scipy-1.13.1-test.patch
+++ /dev/null
@@ -1,46 +0,0 @@
-From 2f930ed7d579837423cf58f30d25d4922e4cef7c Mon Sep 17 00:00:00 2001
-From: Evgeni Burovski <evgeny.burovskiy@gmail.com>
-Date: Thu, 6 Jun 2024 10:01:58 +0300
-Subject: [PATCH] TST: linalg: bump tolerance in TestEig::test_singular
-
-Some assertions have atol/rtol configurable, and one assertion had them
-hardcoded, and that was causing tolerance problems in a Debian build with
-reference LAPACK.
-
-closes https://github.com/scipy/scipy/issues/20911
----
- scipy/linalg/tests/test_decomp.py | 7 ++++---
- 1 file changed, 4 insertions(+), 3 deletions(-)
-
-diff --git a/scipy/linalg/tests/test_decomp.py b/scipy/linalg/tests/test_decomp.py
-index 5e171965a4bd..2c4033360d16 100644
---- a/scipy/linalg/tests/test_decomp.py
-+++ b/scipy/linalg/tests/test_decomp.py
-@@ -181,7 +181,8 @@ def test_gh_3054(self):
- assert_equal(w, np.inf)
- assert_allclose(vr, 1)
-
-- def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13):
-+ def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13,
-+ atol=1e-13, rtol=1e-13):
- if B is not None:
- A, B = asarray(A), asarray(B)
- B0 = B
-@@ -230,7 +231,7 @@ def _check_gen_eig(self, A, B, atol_homog=1e-13, rtol_homog=1e-13):
- for i in range(res.shape[1]):
- if np.all(isfinite(res[:, i])):
- assert_allclose(res[:, i], 0,
-- rtol=1e-13, atol=1e-13, err_msg=msg)
-+ rtol=rtol, atol=atol, err_msg=msg)
-
- # try to consistently order eigenvalues, including complex conjugate pairs
- w_fin = w[isfinite(w)]
-@@ -269,7 +270,7 @@ def test_singular(self):
- [24, 35, 18, 21, 22]])
-
- with np.errstate(all='ignore'):
-- self._check_gen_eig(A, B, atol_homog=5e-13)
-+ self._check_gen_eig(A, B, atol_homog=5e-13, atol=5e-13)
-
- def test_falker(self):
- # Test matrices giving some Nan generalized eigenvalues.
diff --git a/dev-python/scipy/scipy-1.11.3-r2.ebuild b/dev-python/scipy/scipy-1.11.3-r2.ebuild
deleted file mode 100644
index ada4553734a9..000000000000
--- a/dev-python/scipy/scipy-1.11.3-r2.ebuild
+++ /dev/null
@@ -1,150 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit flag-o-matic fortran-2 distutils-r1 multiprocessing
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
- https://scipy.org/
- https://github.com/scipy/scipy/
- https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
- inherit git-r3
-
- # Need submodules, so git for now.
- EGIT_REPO_URI="https://github.com/scipy/scipy"
- EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
- EGIT_SUBMODULES=( '*' )
-else
- inherit pypi
-
- # Upstream is often behind with doc updates
- #DOC_PV=${PV}
- DOC_PV=1.11.0
-
- SRC_URI+="
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
- )"
-
- if [[ ${PV} != *rc* ]] ; then
- KEYWORDS="amd64 arm arm64 ~loong ppc64 ~riscv ~sparc x86"
- fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
- >=dev-python/numpy-1.21.6:=[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:=
- sci-libs/umfpack
- virtual/cblas
- >=virtual/lapack-3.8
-"
-RDEPEND="
- ${DEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
- dev-lang/swig
- >=dev-python/cython-0.29.35[${PYTHON_USEDEP}]
- >=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}]
- >=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
- >=dev-build/meson-1.1.0
- !kernel_Darwin? ( dev-util/patchelf )
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
- test? (
- dev-python/pytest-xdist[${PYTHON_USEDEP}]
- )
- test-rust? (
- dev-python/pooch[${PYTHON_USEDEP}]
- )
-"
-
-distutils_enable_tests pytest
-
-src_unpack() {
- default
-
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
- fi
-}
-
-python_configure_all() {
- # https://github.com/scipy/scipy/pull/19857
- # Fixed in 1.13.0
- filter-lto
- DISTUTILS_ARGS=(
- -Dblas=blas
- -Dlapack=lapack
- -Duse-pythran=$(usex fortran true false)
- )
-}
-
-python_test() {
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
- local EPYTEST_DESELECT=(
- # Network
- scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
- scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
- scipy/datasets/tests/test_data.py::TestDatasets::test_face
- scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
- # Precision issue with diff. blas?
- scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
- # Crashes with assertion, not a regression
- # https://github.com/scipy/scipy/issues/19321
- scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
- # timeouts
- scipy/sparse/linalg/tests/test_propack.py::test_examples
- # hang or incredibly slow
- scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
- scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
- )
- local EPYTEST_IGNORE=()
-
- if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
- EPYTEST_IGNORE+=(
- scipy/datasets/tests/test_data.py
- )
- fi
-
- case ${EPYTHON} in
- pypy3)
- EPYTEST_DESELECT+=(
- # fd leaks in tests
- # https://github.com/scipy/scipy/issues/19553
- scipy/fft/_pocketfft/tests/test_real_transforms.py
- # TODO
- 'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
- )
- ;;
- esac
-
- epytest -n "$(makeopts_jobs)" --dist=worksteal scipy
-}
-
-python_install_all() {
- use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
- distutils-r1_python_install_all
-}
diff --git a/dev-python/scipy/scipy-1.11.4-r1.ebuild b/dev-python/scipy/scipy-1.11.4-r1.ebuild
deleted file mode 100644
index 57a88fe87cf2..000000000000
--- a/dev-python/scipy/scipy-1.11.4-r1.ebuild
+++ /dev/null
@@ -1,150 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit flag-o-matic fortran-2 distutils-r1 multiprocessing
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
- https://scipy.org/
- https://github.com/scipy/scipy/
- https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
- inherit git-r3
-
- # Need submodules, so git for now.
- EGIT_REPO_URI="https://github.com/scipy/scipy"
- EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
- EGIT_SUBMODULES=( '*' )
-else
- inherit pypi
-
- # Upstream is often behind with doc updates
- #DOC_PV=${PV}
- DOC_PV=1.11.2
-
- SRC_URI+="
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
- )"
-
- if [[ ${PV} != *rc* ]] ; then
- KEYWORDS="amd64 arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc ~x86"
- fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
- >=dev-python/numpy-1.21.6:=[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:=
- sci-libs/umfpack
- virtual/cblas
- >=virtual/lapack-3.8
-"
-RDEPEND="
- ${DEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
- dev-lang/swig
- >=dev-python/cython-0.29.35[${PYTHON_USEDEP}]
- >=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}]
- >=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
- >=dev-build/meson-1.1.0
- !kernel_Darwin? ( dev-util/patchelf )
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
- test? (
- dev-python/pytest-xdist[${PYTHON_USEDEP}]
- )
- test-rust? (
- dev-python/pooch[${PYTHON_USEDEP}]
- )
-"
-
-distutils_enable_tests pytest
-
-src_unpack() {
- default
-
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
- fi
-}
-
-python_configure_all() {
- # https://github.com/scipy/scipy/pull/19857
- # Fixed in 1.13.0
- filter-lto
- DISTUTILS_ARGS=(
- -Dblas=blas
- -Dlapack=lapack
- -Duse-pythran=$(usex fortran true false)
- )
-}
-
-python_test() {
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
- local EPYTEST_DESELECT=(
- # Network
- scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
- scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
- scipy/datasets/tests/test_data.py::TestDatasets::test_face
- scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
- # Precision issue with diff. blas?
- scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
- # Crashes with assertion, not a regression
- # https://github.com/scipy/scipy/issues/19321
- scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
- # timeouts
- scipy/sparse/linalg/tests/test_propack.py::test_examples
- # hang or incredibly slow
- scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
- scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
- )
- local EPYTEST_IGNORE=()
-
- if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
- EPYTEST_IGNORE+=(
- scipy/datasets/tests/test_data.py
- )
- fi
-
- case ${EPYTHON} in
- pypy3)
- EPYTEST_DESELECT+=(
- # fd leaks in tests
- # https://github.com/scipy/scipy/issues/19553
- scipy/fft/_pocketfft/tests/test_real_transforms.py
- # TODO
- 'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
- )
- ;;
- esac
-
- epytest -n "$(makeopts_jobs)" --dist=worksteal scipy
-}
-
-python_install_all() {
- use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
- distutils-r1_python_install_all
-}
diff --git a/dev-python/scipy/scipy-1.12.0-r1.ebuild b/dev-python/scipy/scipy-1.12.0-r1.ebuild
deleted file mode 100644
index d3dff15df08b..000000000000
--- a/dev-python/scipy/scipy-1.12.0-r1.ebuild
+++ /dev/null
@@ -1,151 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit flag-o-matic fortran-2 distutils-r1
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
- https://scipy.org/
- https://github.com/scipy/scipy/
- https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
- inherit git-r3
-
- # Need submodules, so git for now.
- EGIT_REPO_URI="https://github.com/scipy/scipy"
- EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
- EGIT_SUBMODULES=( '*' )
-else
- inherit pypi
-
- # Upstream is often behind with doc updates
- #DOC_PV=${PV}
- DOC_PV=1.11.2
-
- SRC_URI+="
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
- )"
-
- if [[ ${PV} != *rc* ]] ; then
- KEYWORDS="amd64 arm arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86"
- fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
- >=dev-python/numpy-1.21.6:=[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:=
- sci-libs/umfpack
- virtual/cblas
- >=virtual/lapack-3.8
-"
-RDEPEND="
- ${DEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
- dev-lang/swig
- >=dev-python/cython-0.29.35[${PYTHON_USEDEP}]
- >=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}]
- >=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
- >=dev-build/meson-1.1.0
- !kernel_Darwin? ( dev-util/patchelf )
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
- test? (
- dev-python/hypothesis[${PYTHON_USEDEP}]
- )
- test-rust? (
- dev-python/pooch[${PYTHON_USEDEP}]
- )
-"
-
-EPYTEST_XDIST=1
-distutils_enable_tests pytest
-
-src_unpack() {
- default
-
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
- fi
-}
-
-python_configure_all() {
- # https://github.com/scipy/scipy/pull/19857
- # Fixed in 1.13.0
- filter-lto
- DISTUTILS_ARGS=(
- -Dblas=blas
- -Dlapack=lapack
- -Duse-pythran=$(usex fortran true false)
- )
-}
-
-python_test() {
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
- local EPYTEST_DESELECT=(
- # Network
- scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
- scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
- scipy/datasets/tests/test_data.py::TestDatasets::test_face
- scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
- # Precision issue with diff. blas?
- scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
- # Crashes with assertion, not a regression
- # https://github.com/scipy/scipy/issues/19321
- scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
- # timeouts
- scipy/sparse/linalg/tests/test_propack.py::test_examples
- # hang or incredibly slow
- scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
- scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
- )
- local EPYTEST_IGNORE=()
-
- if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
- EPYTEST_IGNORE+=(
- scipy/datasets/tests/test_data.py
- )
- fi
-
- case ${EPYTHON} in
- pypy3)
- EPYTEST_DESELECT+=(
- # fd leaks in tests
- # https://github.com/scipy/scipy/issues/19553
- scipy/fft/_pocketfft/tests/test_real_transforms.py
- # TODO
- 'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
- )
- ;;
- esac
-
- epytest scipy
-}
-
-python_install_all() {
- use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
- distutils-r1_python_install_all
-}
diff --git a/dev-python/scipy/scipy-1.13.0.ebuild b/dev-python/scipy/scipy-1.13.0.ebuild
deleted file mode 100644
index f361a013c952..000000000000
--- a/dev-python/scipy/scipy-1.13.0.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit fortran-2 distutils-r1
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
- https://scipy.org/
- https://github.com/scipy/scipy/
- https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
- inherit git-r3
-
- # Need submodules, so git for now.
- EGIT_REPO_URI="https://github.com/scipy/scipy"
- EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
- EGIT_SUBMODULES=( '*' )
-else
- inherit pypi
-
- # Upstream is often behind with doc updates
- DOC_PV=${PV}
-
- SRC_URI+="
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
- )"
-
- if [[ ${PV} != *rc* ]] ; then
- KEYWORDS="~amd64 ~arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc ~x86"
- fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
- >=dev-python/numpy-1.22.4:=[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:=
- sci-libs/umfpack
- virtual/cblas
- >=virtual/lapack-3.8
-"
-RDEPEND="
- ${DEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
- dev-lang/swig
- >=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
- >=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
- >=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}]
- >=dev-build/meson-1.1.0
- !kernel_Darwin? ( dev-util/patchelf )
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- fortran? ( >=dev-python/pythran-0.14.0[${PYTHON_USEDEP}] )
- test? (
- >=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
- )
- test-rust? (
- dev-python/pooch[${PYTHON_USEDEP}]
- )
-"
-
-EPYTEST_XDIST=1
-distutils_enable_tests pytest
-
-src_unpack() {
- default
-
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
- fi
-}
-
-python_configure_all() {
- DISTUTILS_ARGS=(
- -Dblas=blas
- -Dlapack=lapack
- -Duse-pythran=$(usex fortran true false)
- )
-
- # hide real scipy, to prevent pythran crashing when scipy is being
- # rebuilt for new numpy ABI
- # https://github.com/serge-sans-paille/pythran/issues/2194
- cat >> "${T}/scipy.py" <<-EOF || die
- raise ImportError("hide real scipy")
- EOF
-}
-
-python_compile() {
- local -x PYTHONPATH="${T}${PYTHONPATH+:${PYTHONPATH}}"
- distutils-r1_python_compile
-}
-
-python_test() {
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
- local EPYTEST_DESELECT=(
- # Network
- scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
- scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
- scipy/datasets/tests/test_data.py::TestDatasets::test_face
- scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
- # Precision issue with diff. blas?
- scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
- # Crashes with assertion, not a regression
- # https://github.com/scipy/scipy/issues/19321
- scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
- # timeouts
- scipy/sparse/linalg/tests/test_propack.py::test_examples
- # hang or incredibly slow
- scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
- scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
-
- # TODO
- scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
- )
- local EPYTEST_IGNORE=()
-
- if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
- EPYTEST_IGNORE+=(
- scipy/datasets/tests/test_data.py
- )
- fi
-
- case ${EPYTHON} in
- pypy3)
- EPYTEST_DESELECT+=(
- # fd leaks in tests
- # https://github.com/scipy/scipy/issues/19553
- scipy/fft/_pocketfft/tests/test_real_transforms.py
- # TODO
- 'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
- # missing dict.__ror__
- # https://github.com/pypy/pypy/issues/4934
- 'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]'
- )
- ;;
- esac
-
- local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
- epytest scipy
-}
-
-python_install_all() {
- use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
- distutils-r1_python_install_all
-}
diff --git a/dev-python/scipy/scipy-1.13.1.ebuild b/dev-python/scipy/scipy-1.13.1.ebuild
deleted file mode 100644
index 5200331cde1f..000000000000
--- a/dev-python/scipy/scipy-1.13.1.ebuild
+++ /dev/null
@@ -1,171 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-FORTRAN_NEEDED=fortran
-DISTUTILS_EXT=1
-DISTUTILS_USE_PEP517=meson-python
-PYTHON_COMPAT=( pypy3 python3_{10..12} )
-PYTHON_REQ_USE="threads(+)"
-
-inherit fortran-2 distutils-r1
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="
- https://scipy.org/
- https://github.com/scipy/scipy/
- https://pypi.org/project/scipy/
-"
-
-if [[ ${PV} == *9999* ]] ; then
- inherit git-r3
-
- # Need submodules, so git for now.
- EGIT_REPO_URI="https://github.com/scipy/scipy"
- EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
- EGIT_SUBMODULES=( '*' )
-else
- inherit pypi
-
- # Upstream is often behind with doc updates
- DOC_PV=${PV}
-
- SRC_URI+="
- doc? (
- https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
- )"
-
- if [[ ${PV} != *rc* ]] ; then
- KEYWORDS="amd64 arm arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc x86"
- fi
-fi
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc +fortran test-rust"
-
-# umfpack is technically optional but it's preferred to have it available.
-DEPEND="
- >=dev-python/numpy-1.22.4:=[lapack,${PYTHON_USEDEP}]
- sci-libs/arpack:=
- sci-libs/umfpack
- virtual/cblas
- >=virtual/lapack-3.8
-"
-RDEPEND="
- ${DEPEND}
- dev-python/pillow[${PYTHON_USEDEP}]
-"
-BDEPEND="
- dev-lang/swig
- >=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
- >=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
- >=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}]
- >=dev-build/meson-1.1.0
- !kernel_Darwin? ( dev-util/patchelf )
- virtual/pkgconfig
- doc? ( app-arch/unzip )
- fortran? ( >=dev-python/pythran-0.14.0[${PYTHON_USEDEP}] )
- test? (
- >=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
- )
- test-rust? (
- dev-python/pooch[${PYTHON_USEDEP}]
- )
-"
-
-EPYTEST_XDIST=1
-distutils_enable_tests pytest
-
-PATCHES=(
- # https://github.com/scipy/scipy/pull/20914
- "${FILESDIR}/${P}-test.patch"
-)
-
-src_unpack() {
- default
-
- if use doc; then
- unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
- fi
-}
-
-python_configure_all() {
- DISTUTILS_ARGS=(
- -Dblas=blas
- -Dlapack=lapack
- -Duse-pythran=$(usex fortran true false)
- )
-
- # hide real scipy, to prevent pythran crashing when scipy is being
- # rebuilt for new numpy ABI
- # https://github.com/serge-sans-paille/pythran/issues/2194
- cat >> "${T}/scipy.py" <<-EOF || die
- raise ImportError("hide real scipy")
- EOF
-}
-
-python_compile() {
- local -x PYTHONPATH="${T}${PYTHONPATH+:${PYTHONPATH}}"
- distutils-r1_python_compile
-}
-
-python_test() {
- cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
-
- local EPYTEST_DESELECT=(
- # Network
- scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
- scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
- scipy/datasets/tests/test_data.py::TestDatasets::test_face
- scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
-
- # Precision issue with diff. blas?
- scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
-
- # Crashes with assertion, not a regression
- # https://github.com/scipy/scipy/issues/19321
- scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
-
- # timeouts
- scipy/sparse/linalg/tests/test_propack.py::test_examples
- # hang or incredibly slow
- scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
- scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
-
- # TODO
- scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
- )
- local EPYTEST_IGNORE=()
-
- if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
- EPYTEST_IGNORE+=(
- scipy/datasets/tests/test_data.py
- )
- fi
-
- case ${EPYTHON} in
- pypy3)
- EPYTEST_DESELECT+=(
- # fd leaks in tests
- # https://github.com/scipy/scipy/issues/19553
- scipy/fft/_pocketfft/tests/test_real_transforms.py
- # TODO
- 'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
- # missing dict.__ror__
- # https://github.com/pypy/pypy/issues/4934
- 'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]'
- )
- ;;
- esac
-
- local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
- epytest scipy
-}
-
-python_install_all() {
- use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
-
- distutils-r1_python_install_all
-}
diff --git a/dev-python/scipy/scipy-1.14.0.ebuild b/dev-python/scipy/scipy-1.14.0.ebuild
index dab0574a1b01..cd7be229a991 100644
--- a/dev-python/scipy/scipy-1.14.0.ebuild
+++ b/dev-python/scipy/scipy-1.14.0.ebuild
@@ -37,7 +37,7 @@ else
)"
if [[ ${PV} != *rc* ]] ; then
- KEYWORDS="~amd64 ~arm ~arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc x86"
+ KEYWORDS="amd64 arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc x86"
fi
fi