gentoo resync : 28.04.2021

author: V3n3RiX <venerix@redcorelinux.org> 2021-04-28 20:21:43 +0100
committer: V3n3RiX <venerix@redcorelinux.org> 2021-04-28 20:21:43 +0100
commit: 40aaaa64e86ba6710bbeb31c4615a6ce80e75e11 (patch)
tree: 758c221bad35c9288d0bd6df9c7dfc226728e52c /metadata/md5-cache/sci-biology
parent: 8d5dbd847cbc704a6a06405856e94b461011afe3 (diff)
90 files changed, 162 insertions, 172 deletions
diff --git a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
index d54570070249..a76637d8cd8a 100644
--- a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
+++ b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/tcl:0 dev-lang/tk:0
 RESTRICT=bindist mirror
 SLOT=0
 SRC_URI=http://www.biology.utah.edu/jorgensen/wayned/ape/Download/Linux/ApE_linux_current.zip -> ApE-2.0.7.zip
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=ca6aef807b65b2b092f7e1ff4ebbe5e2
diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
index 9c529c51e2b2..ee6344141b3c 100644
--- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
+++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
@@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ )
 RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	45b49db67094fdafbb6a16a2299e894b	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	1d03df021d958f89f4cc78e289d0b116	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	58b5d72d607014c48b5a1e106318d584	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	517f16af48ee3ab88180dd58b5143213	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	990ad6a000cf18d1ef87117e8c7b0a54	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=bccaeef3292f6df307fc14fb5a2a74b2
diff --git a/metadata/md5-cache/sci-biology/HTSeq-0.12.4 b/metadata/md5-cache/sci-biology/HTSeq-0.12.4
index 1b8401abd42f..673517840e8a 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-0.12.4
+++ b/metadata/md5-cache/sci-biology/HTSeq-0.12.4
@@ -11,5 +11,5 @@ RDEPEND=dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-
 REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
 SLOT=0
 SRC_URI=https://github.com/htseq/htseq/archive/release_0.12.4.tar.gz -> HTSeq-0.12.4.tar.gz
-_eclasses_=distutils-r1	16579e06f8839831bd5c03455bb87e3f	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	6d099888c5b4dd4868c26508df307e95	python-utils-r1	2dc8e06a3429719b43e9140f7292a425	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=distutils-r1	d8655e1387589a2e1930339b1627d5c1	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	26e4ad0a4190b14f70973dc253e86535	python-utils-r1	3ea803de86891185c7b1db2c0b5bc8c8	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=ae9941d3e3234244619fdcb2b46c8e90
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index c2be060327dc..77f127184374 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -10,5 +10,5 @@ PROPERTIES=live
 RDEPEND=dev-python/numpy[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
 REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
 SLOT=0
-_eclasses_=distutils-r1	16579e06f8839831bd5c03455bb87e3f	git-r3	3e7ec3d6619213460c85e2aa48398441	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	6d099888c5b4dd4868c26508df307e95	python-utils-r1	2dc8e06a3429719b43e9140f7292a425	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=distutils-r1	d8655e1387589a2e1930339b1627d5c1	git-r3	b8e8c92aa5fe8df7187e466138eb4e52	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	26e4ad0a4190b14f70973dc253e86535	python-utils-r1	3ea803de86891185c7b1db2c0b5bc8c8	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=ae9941d3e3234244619fdcb2b46c8e90
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index af0c0ed78803..9d3bef5454b6 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2
index 0ceb49b40e13..9bb03a08afc4 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2
+++ b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare pretend setup
-DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
 EAPI=6
 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/
@@ -9,5 +9,5 @@ LICENSE=abyss
 RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi )
 SLOT=0
 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=14d874a3152b5d75a6be53f68e24fd47
diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r3 b/metadata/md5-cache/sci-biology/amap-2.2-r3
index 8d7bf7aac1ba..a067aa088e2a 100644
--- a/metadata/md5-cache/sci-biology/amap-2.2-r3
+++ b/metadata/md5-cache/sci-biology/amap-2.2-r3
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=java? ( >=virtual/jre-1.5 ) java? ( >=dev-java/java-config-2.2.0-r3 )
 SLOT=0
 SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	fb9e1462d72ecaf7c91ae1d169606d9f	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	378e4cda228ea0231a0ac283cb2ad25c	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	51fb0a4707d58382310390ad47ab0ab0	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	2440f41421207d084e5e3f1fb001b34e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=6bd792e8b76c06ee993b88f83e48b907
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.1 b/metadata/md5-cache/sci-biology/bamtools-2.5.1
index de7d4b09cc4b..47464eb798c1 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.1
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.1
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/2.5.1
 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz -> bamtools-2.5.1.tar.gz
-_eclasses_=cmake	314a813be2f09820e8978cdee941e501	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	518e4c9a6a38dfd7afc54b6a7c5de3da	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index 525476368e22..ede8471d5992 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -8,5 +8,5 @@ LICENSE=MIT
 PROPERTIES=live
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/9999
-_eclasses_=cmake	314a813be2f09820e8978cdee941e501	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	518e4c9a6a38dfd7afc54b6a7c5de3da	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	git-r3	b8e8c92aa5fe8df7187e466138eb4e52	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.10.2 b/metadata/md5-cache/sci-biology/bcftools-1.10.2
index d17e2e27b5bc..f209875a8053 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.10.2
+++ b/metadata/md5-cache/sci-biology/bcftools-1.10.2
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl python_single_target_python3_7? ( dev-python/matplotlib[py
 REQUIRED_USE=^^ ( python_single_target_python3_7 python_single_target_python3_8 python_single_target_python3_9 )
 SLOT=0
 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2
-_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	python-single-r1	d3100de905f978df912135806cf27188	python-utils-r1	2dc8e06a3429719b43e9140f7292a425	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	python-single-r1	d25ac9d5d91fe9d44fda6ec192aca11a	python-utils-r1	3ea803de86891185c7b1db2c0b5bc8c8	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=2fd4d2217632ea38f3b2adae16fec9fb
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.29.2 b/metadata/md5-cache/sci-biology/bedtools-2.29.2
index 78b0ffe1b9c6..ba8b6c687596 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.29.2
+++ b/metadata/md5-cache/sci-biology/bedtools-2.29.2
@@ -11,5 +11,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.29.2/bedtools-2.29.2.tar.gz
-_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	python-any-r1	0a79a9b53fce4525f438f8ea9695fb88	python-utils-r1	2dc8e06a3429719b43e9140f7292a425	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	python-any-r1	17241a11501065ff3651350040875aa9	python-utils-r1	3ea803de86891185c7b1db2c0b5bc8c8	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=f3eef2425b0d021201cd5bb705836375
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0
index f717a41648bf..cee5a93733c7 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.30.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0
@@ -11,5 +11,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz
-_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	python-any-r1	0a79a9b53fce4525f438f8ea9695fb88	python-utils-r1	2dc8e06a3429719b43e9140f7292a425	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	python-any-r1	17241a11501065ff3651350040875aa9	python-utils-r1	3ea803de86891185c7b1db2c0b5bc8c8	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=14bf1e3697276975f4e8b47a297b1bf5
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index fbdb4818cb6f..18f7cc4afc69 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=prepare
 DESCRIPTION=Blat-like Fast Accurate Search Tool
 EAPI=7
@@ -10,5 +10,5 @@ RDEPEND=dev-perl/XML-Simple
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=e64abecddb86e9860edc80410f299d83
diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
index fe4db0bb7bf6..f33b00c1268b 100644
--- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2
+++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=install prepare
-DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs
 EAPI=6
 HOMEPAGE=http://stephanopoulos.openwetware.org/BIOGREP.html
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf )
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=9731727dae2a2514bcaa486b0059272e
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7
index 69d4cd620409..282a9ca18bca 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.7
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targe
 RESTRICT=!test? ( test ) !test? ( test )
 SLOT=0
 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz
-_eclasses_=distutils-r1	16579e06f8839831bd5c03455bb87e3f	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	6d099888c5b4dd4868c26508df307e95	python-utils-r1	2dc8e06a3429719b43e9140f7292a425	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=distutils-r1	d8655e1387589a2e1930339b1627d5c1	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	26e4ad0a4190b14f70973dc253e86535	python-utils-r1	3ea803de86891185c7b1db2c0b5bc8c8	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=6e4b8600d4f3c3ac26b099a9c4577ca0
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9
index ec4d9f62f3cd..6c09c1ae2cca 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9
@@ -3,7 +3,7 @@ DEPEND=dev-perl/Module-Build dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm
 DESCRIPTION=Perl tools for bioinformatics - Core modules
 EAPI=5
 HOMEPAGE=http://www.bioperl.org/
-IUSE=-minimal graphviz sqlite +db +network +run
+IUSE=minimal graphviz sqlite +db +network +run
 KEYWORDS=amd64 x86
 LICENSE=|| ( Artistic GPL-1+ )
 PDEPEND=db? ( >=sci-biology/bioperl-db-1.6.9 ) network? ( >=sci-biology/bioperl-network-1.6.9 ) run? ( >=sci-biology/bioperl-run-1.6.9 )
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr
 REQUIRED_USE=minimal? ( !graphviz )
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	45b49db67094fdafbb6a16a2299e894b	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=be22a76392a6e5c121e4b6d388045faa
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	58b5d72d607014c48b5a1e106318d584	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	517f16af48ee3ab88180dd58b5143213	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=8a48cf5c6cd3d568ec12cc4fdb88021b
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
index 4b2c21eebb0b..27a8ab54cecc 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	45b49db67094fdafbb6a16a2299e894b	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	58b5d72d607014c48b5a1e106318d584	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	517f16af48ee3ab88180dd58b5143213	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=2470d7ecf1b6ff1902a8d74057748480
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
index 08126ab1b13f..676246691ecb 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r1
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83
+_eclasses_=multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	58b5d72d607014c48b5a1e106318d584
 _md5_=d406c809bbde4bce1c891731bbbd6803
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
index 24e841e5ff0f..a9309eb1fc19 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	45b49db67094fdafbb6a16a2299e894b	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	58b5d72d607014c48b5a1e106318d584	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	517f16af48ee3ab88180dd58b5143213	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=8f7c4053ffbec76cfad29cca2d99847b
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
index 8adbe5d418d8..4ba2bd9cb6d3 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	45b49db67094fdafbb6a16a2299e894b	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	58b5d72d607014c48b5a1e106318d584	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	517f16af48ee3ab88180dd58b5143213	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=9caec4e5b47cbf306a1689903f2a018a
diff --git a/metadata/md5-cache/sci-biology/biopython-1.77 b/metadata/md5-cache/sci-biology/biopython-1.77
index 1fe0f094f3a3..d5d627bedb46 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.77
+++ b/metadata/md5-cache/sci-biology/biopython-1.77
@@ -11,5 +11,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python3_7(-)?,python_targets_python
 REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
 SLOT=0
 SRC_URI=mirror://pypi/b/biopython/biopython-1.77.tar.gz
-_eclasses_=distutils-r1	16579e06f8839831bd5c03455bb87e3f	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	optfeature	6a2add34e06e5a05d88471a33ccdd73e	python-r1	6d099888c5b4dd4868c26508df307e95	python-utils-r1	2dc8e06a3429719b43e9140f7292a425	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
-_md5_=d8b830da081a300c996803cc6fafb594
+_eclasses_=distutils-r1	d8655e1387589a2e1930339b1627d5c1	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	optfeature	e142388219c7fee6ff016fe1c78a10a5	python-r1	26e4ad0a4190b14f70973dc253e86535	python-utils-r1	3ea803de86891185c7b1db2c0b5bc8c8	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_md5_=7f5250b5ff62ae5ff155616d0b65204b
diff --git a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 b/metadata/md5-cache/sci-biology/cd-hit-4.6.6
index d5d579279f85..53de947800d9 100644
--- a/metadata/md5-cache/sci-biology/cd-hit-4.6.6
+++ b/metadata/md5-cache/sci-biology/cd-hit-4.6.6
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=bbe0ae10275a73485487e08f19f4ac1b
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
index e07f15976fc2..be390ddf5fbd 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=dev-libs/argtable >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/argtable sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Scalable multiple alignment of protein sequences
 EAPI=6
 HOMEPAGE=http://www.clustal.org/omega/
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dev-libs/argtable
 SLOT=0
 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=9ade45d2e283bc5fcc7eef16725e18ae
diff --git a/metadata/md5-cache/sci-biology/consed-29 b/metadata/md5-cache/sci-biology/consed-29
index 1439f56fb379..0b36eee39f26 100644
--- a/metadata/md5-cache/sci-biology/consed-29
+++ b/metadata/md5-cache/sci-biology/consed-29
@@ -10,5 +10,5 @@ RDEPEND=x11-libs/libX11 x11-libs/motif:0 sci-biology/samtools:0.1-legacy dev-lan
 RESTRICT=fetch
 SLOT=0
 SRC_URI=consed-29-sources.tar.gz consed-29-linux.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=1e30f1827727dab34c75c8c026745369
diff --git a/metadata/md5-cache/sci-biology/cutg-160-r1 b/metadata/md5-cache/sci-biology/cutg-160-r1
index 60c35396bc6a..014099bad9f1 100644
--- a/metadata/md5-cache/sci-biology/cutg-160-r1
+++ b/metadata/md5-cache/sci-biology/cutg-160-r1
@@ -1,7 +1,7 @@
+BDEPEND=emboss? ( sci-biology/emboss )
 DEFINED_PHASES=compile install
-DEPEND=emboss? ( sci-biology/emboss )
 DESCRIPTION=Codon usage tables calculated from GenBank
-EAPI=5
+EAPI=7
 HOMEPAGE=http://www.kazusa.or.jp/codon/
 IUSE=emboss minimal
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
@@ -10,4 +10,4 @@ RDEPEND=emboss? ( sci-biology/emboss )
 RESTRICT=binchecks strip
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/cutg-160.tar.xz
-_md5_=bbbd347ac6eafe2416778cd68a45bf1a
+_md5_=b2140a376a1ceedf750f2cdd153309cf
diff --git a/metadata/md5-cache/sci-biology/dialign2-2.2.1 b/metadata/md5-cache/sci-biology/dialign2-2.2.1
index a3d65f070a61..4849553a2c7d 100644
--- a/metadata/md5-cache/sci-biology/dialign2-2.2.1
+++ b/metadata/md5-cache/sci-biology/dialign2-2.2.1
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=LGPL-2.1
 SLOT=0
 SRC_URI=http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=3761a69a47f38308f54ae0b051361ed6
diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4
index df5c935b6a86..d19f694a944c 100644
--- a/metadata/md5-cache/sci-biology/diya-1.0_rc4
+++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal? ( sci-biology/mummer sci-biology/glimmer sci-biology/trnascan-se sci-biology/infernal ) dev-lang/perl:=[-build(-)]
 SLOT=0
 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	45b49db67094fdafbb6a16a2299e894b	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	58b5d72d607014c48b5a1e106318d584	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	unpacker	517f16af48ee3ab88180dd58b5143213	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=5d4639d7c08c43e2c2208492508fd56c
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
index c5f2f08d6652..57a8620b49e2 100644
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Applications from the CBS group
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	4e3025abdbbab90f9ddb2bfd8d339e0b	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	93f4f6ac626ed63f042344dd76574b41	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=77305643fe2a87a5fac7d915688baa6a
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
index 1f589408f124..4fc581e9c254 100644
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
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 _md5_=58b5684a48770c482660c463cca0df76
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
index de21804dc413..21d5299854c1 100644
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
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 _md5_=20f6c7abf908473570516ff49847a320
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
index e3043c954c29..8ca49488ca3b 100644
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz
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+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	93f4f6ac626ed63f042344dd76574b41	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=fc6983ff5591fa7825d4cd99d376c861
diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
index 5e276a7565ca..545d388b8138 100644
--- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz
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 _md5_=00bdcd88d6e9743af4531e223888195b
diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
index 62e8da18167c..b90f9715cb98 100644
--- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
+++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz
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 _md5_=54738204e5b5aeb9aa0216f7c53c77df
diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
index 7bbdc376dc07..693079e6a7e9 100644
--- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
index dd8c459121b9..7d5825cf9e0d 100644
--- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz
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 _md5_=c5399e3d4e7e59aaa70e6477a41a7345
diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
index 395912e1089b..91ff0e2d11d7 100644
--- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
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 _md5_=88c3ac6be6849f4230f25bf463931561
diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
index d5f36028ed10..bc4bfcc64878 100644
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
index a24061033027..7baaef459df6 100644
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
+++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
index 603aa134f511..fa758a645782 100644
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein signature add-on package
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
index f33753b13263..de9ac67099a4 100644
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein structure add-on package
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
index 3b42df663674..093099d5e86f 100644
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Transmembrane protein display
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
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 _md5_=9ecbee609930ce8d1c14b72746c0ff64
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
index 51fdb198fac2..a65263ccf767 100644
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding
@@ -10,5 +10,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	4e3025abdbbab90f9ddb2bfd8d339e0b	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	93f4f6ac626ed63f042344dd76574b41	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=bbce91d6a8900865a446cb3dea302ccf
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
index c32af1a491de..2dad93b1be6e 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install postinst prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package
@@ -11,5 +11,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci
 RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	4e3025abdbbab90f9ddb2bfd8d339e0b	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	readme.gentoo-r1	22ae82e140bdd95d17a34fd5fd733190	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	93f4f6ac626ed63f042344dd76574b41	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	readme.gentoo-r1	22ae82e140bdd95d17a34fd5fd733190	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=72c86b427ea83b8feb792884f23feaf3
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d
index 7acb3ab7dbd8..2d782c49f4a1 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=media-libs/gd[png] media-libs/libpng:0= >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=media-libs/gd[png] media-libs/libpng:0= sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Prokaryotic and Eukaryotic gene predictor
 EAPI=6
 HOMEPAGE=http://eugene.toulouse.inra.fr/
@@ -9,5 +9,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0=
 RESTRICT=test
 SLOT=0
 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=683d1e7f9daeda6cd20b92117330ea81
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
index f6dc77c7dd2c..1d0d6703f056 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=dev-libs/glib:2 >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/glib:2 sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Generic tool for pairwise sequence comparison
 EAPI=6
 HOMEPAGE=https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate
@@ -11,5 +11,5 @@ REQUIRED_USE=test? ( utils )
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=05c99b447503c7a3fae4594cd126939a
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index 6d8306b35118..1ea39e35462b 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -9,5 +9,5 @@ LICENSE=Artistic
 RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
 SLOT=0
 SRC_URI=https://pachterlab.github.io/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
-_eclasses_=cmake	314a813be2f09820e8978cdee941e501	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	518e4c9a6a38dfd7afc54b6a7c5de3da	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b4fcbc714ea460615318f4baa4bc347a
diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e
index 61fcc854558d..99c843416b91 100644
--- a/metadata/md5-cache/sci-biology/fasta-36.3.5e
+++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e
@@ -9,5 +9,5 @@ LICENSE=fasta
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=7beae559e9562f9b68a7eb31e1429651
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=43c2cf221a4fd397bebdbe11749a1707
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11
index 9120be699408..52e004f80a01 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.11
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz
-_eclasses_=cmake	314a813be2f09820e8978cdee941e501	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	518e4c9a6a38dfd7afc54b6a7c5de3da	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=4a94b8db43f0aadb5ece67757ccbe635
diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
index 3bbc0fc9c5e1..683dbffcd990 100644
--- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
+++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=sci-biology/libgtextutils virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sci-biology/libgtextutils virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing
 EAPI=6
 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit
@@ -8,5 +8,5 @@ LICENSE=AGPL-3
 RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot
 SLOT=0
 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=c3bb0edd6b01a31019cf5fd59e22122a
diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.6.13 b/metadata/md5-cache/sci-biology/foldingathome-7.6.13
index 000c9be38a15..eddd8f1ba32a 100644
--- a/metadata/md5-cache/sci-biology/foldingathome-7.6.13
+++ b/metadata/md5-cache/sci-biology/foldingathome-7.6.13
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 || ( dev-libs/openssl-compat:1.0.0 =dev-libs/openssl-1.0*
 RESTRICT=mirror bindist strip
 SLOT=0
 SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.6/fahclient_7.6.13-64bit-release.tar.bz2
-_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	systemd	74b223e42834adf09a2d21fe5fe13741	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	user	b0a0d4ca9e3f79c38f8f4143b8d5a2d8	user-info	a2abd4e2f4c3b9b06d64bf1329359a02
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	systemd	fdf0d765c3f11f91fe54f8def9a8c0e6	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	user	26d8ce6329c43cbac965617f1c0627e2	user-info	a2abd4e2f4c3b9b06d64bf1329359a02
 _md5_=35efc85acab21d56c5bb97f30da7e0f8
diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4
index fad0e77719e5..81633aed7e19 100644
--- a/metadata/md5-cache/sci-biology/gatk-2.4
+++ b/metadata/md5-cache/sci-biology/gatk-2.4
@@ -1,7 +1,7 @@
 DEFINED_PHASES=compile configure install preinst prepare setup unpack
-DEPEND=>=virtual/jdk-1.6 >=dev-java/java-config-2.2.0-r3 >=dev-java/ant-core-1.8.2:0 >=dev-java/javatoolkit-0.3.0-r2
+DEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 >=dev-java/ant-core-1.8.2:0 >=dev-java/javatoolkit-0.3.0-r2
 DESCRIPTION=The Genome Analysis Toolkit
-EAPI=5
+EAPI=7
 HOMEPAGE=http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit
 IUSE=elibc_FreeBSD elibc_FreeBSD
 KEYWORDS=~amd64
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3
 SLOT=0
 SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	fb9e1462d72ecaf7c91ae1d169606d9f	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	378e4cda228ea0231a0ac283cb2ad25c	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=8afea474ed6c1f4ad5ac6d6a18c49542
+_eclasses_=java-ant-2	51fb0a4707d58382310390ad47ab0ab0	java-pkg-2	45c44ec10db6affb3ebee1ac72039888	java-utils-2	2440f41421207d084e5e3f1fb001b34e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd
+_md5_=55a95a39304acaad19356cd3f050b4a9
diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1
index d4efd75ecd4d..8ca10620737a 100644
--- a/metadata/md5-cache/sci-biology/gibbs-3.1
+++ b/metadata/md5-cache/sci-biology/gibbs-3.1
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install postinst prepare
 DEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 )
 DESCRIPTION=Identify motifs, conserved regions, in DNA or protein sequences
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 )
 SLOT=0
 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=8d48efee68d1063803fccbc4c73a0f5d
diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 b/metadata/md5-cache/sci-biology/glimmer-3.02-r3
deleted file mode 100644
index 2f0fd3f973fd..000000000000
--- a/metadata/md5-cache/sci-biology/glimmer-3.02-r3
+++ /dev/null
@@ -1,11 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DESCRIPTION=An HMM-based microbial gene finding system from TIGR
-EAPI=5
-HOMEPAGE=https://ccb.jhu.edu/software/glimmer/index.shtml
-KEYWORDS=amd64 x86
-LICENSE=Artistic
-RDEPEND=app-shells/tcsh
-SLOT=0
-SRC_URI=http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=94600a4de5a2dc02bc6652d958a2a034
diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02b b/metadata/md5-cache/sci-biology/glimmer-3.02b
index d2188e7f1bfa..5f9578bcb422 100644
--- a/metadata/md5-cache/sci-biology/glimmer-3.02b
+++ b/metadata/md5-cache/sci-biology/glimmer-3.02b
@@ -1,11 +1,11 @@
 DEFINED_PHASES=compile install prepare
 DESCRIPTION=An HMM-based microbial gene finding system from TIGR
-EAPI=5
+EAPI=7
 HOMEPAGE=https://ccb.jhu.edu/software/glimmer/index.shtml
 KEYWORDS=~amd64 ~x86
 LICENSE=Artistic
 RDEPEND=app-shells/tcsh sci-biology/elph
 SLOT=0
 SRC_URI=https://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=6916d92c69198563f19b744f1e57dddc
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_md5_=f30d3e570cfa5c3e8efb2a7c44bc15e7
diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1
index 1759e96eddae..16137c17b329 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.05-r1
+++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=A subset seed design tool for DNA sequence alignment
 EAPI=6
 HOMEPAGE=http://bioinfo.lifl.fr/yass/iedera.php
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=ce77e1e27bd52fed2fd2af52744d6288
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.43.1 b/metadata/md5-cache/sci-biology/kallisto-0.43.1
index cd53eb8ee259..3ee5daa22be5 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.43.1
+++ b/metadata/md5-cache/sci-biology/kallisto-0.43.1
@@ -8,5 +8,5 @@ LICENSE=BSD
 RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
 SLOT=0
 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz -> kallisto-0.43.1.tar.gz
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	12008d68ebfd61f49a377c49f83558a8	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/kallisto-9999 b/metadata/md5-cache/sci-biology/kallisto-9999
index f180ec0ad793..fde4a593018e 100644
--- a/metadata/md5-cache/sci-biology/kallisto-9999
+++ b/metadata/md5-cache/sci-biology/kallisto-9999
@@ -7,5 +7,5 @@ LICENSE=BSD
 PROPERTIES=live
 RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
 SLOT=0
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	12008d68ebfd61f49a377c49f83558a8	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	git-r3	b8e8c92aa5fe8df7187e466138eb4e52	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
index 90b02886dc68..ffca6e2d9f1a 100644
--- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
+++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Gordon Text utils Library
 EAPI=6
 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit/
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=AGPL-3
 SLOT=0/0
 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=867c9b9e4eee26ad2a76ff6ff0594f52
diff --git a/metadata/md5-cache/sci-biology/mafft-7.305 b/metadata/md5-cache/sci-biology/mafft-7.305
index 69675d3ec212..2c132f6dff1c 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.305
+++ b/metadata/md5-cache/sci-biology/mafft-7.305
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
 LICENSE=BSD
 SLOT=0
 SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=0f3bc4071e292477254a6b10ab15b328
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
index 513a0de900e2..1bb996faf347 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=install prepare
-DEPEND=sys-libs/zlib >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes
 EAPI=6
 HOMEPAGE=http://maq.sourceforge.net/
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=39ffb0025210075a8d7d7f6f81f8da56
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
index fd08d6c7b67a..a1d425ee1ffa 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=media-libs/freeglut sys-libs/zlib >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=media-libs/freeglut sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler
 EAPI=6
 HOMEPAGE=http://maq.sourceforge.net/
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=dee50558d10e75ff9e96f4c3f177c55f
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index 9f01be324da0..e516606f3ace 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure prepare
 DESCRIPTION=A Markov Cluster Algorithm implementation
 EAPI=7
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=9779366f51f2fea08274072a9a019159
diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2
index bcc09eead024..94088245b98d 100644
--- a/metadata/md5-cache/sci-biology/mira-4.0.2
+++ b/metadata/md5-cache/sci-biology/mira-4.0.2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install postinst prepare
-DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/boost[threads] dev-util/google-perftools sys-devel/flex app-editors/vim-core dev-libs/expat sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina
 EAPI=6
 HOMEPAGE=http://www.chevreux.org/projects_mira.html
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dev-libs/boost[threads] dev-util/google-perftools
 SLOT=0
 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=fda11f1c5cd244c9f03806334b1eda1c
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=43c171b4d4fe8641b5d27f17ad50b957
diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30
index b01979abf222..32121d3cbdbc 100644
--- a/metadata/md5-cache/sci-biology/mosaik-2.2.30
+++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=630686b35f8a549c580c5fd0e2cb02fc
diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
index 95b2d188049f..2adc4359fd67 100644
--- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
+++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
@@ -1,7 +1,8 @@
-DEFINED_PHASES=compile install prepare setup
-DEPEND=sci-biology/uchime mpi? ( virtual/mpi ) app-arch/unzip virtual/fortran
+BDEPEND=app-arch/unzip
+DEFINED_PHASES=compile configure install setup
+DEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran
 DESCRIPTION=A suite of algorithms for ecological bioinformatics
-EAPI=5
+EAPI=7
 HOMEPAGE=https://www.mothur.org/
 IUSE=mpi +readline
 KEYWORDS=amd64 x86
@@ -9,5 +10,5 @@ LICENSE=GPL-3
 RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran
 SLOT=0
 SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip
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-_md5_=17f8b3c73710bbb746fc4cbfcf78b85d
+_eclasses_=edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	fortran-2	b4796813ccda91c9c0d3463fc90aa969	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=2a931ea6d0536a0cb3441d235f5d2d6b
diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
index 4372ed565481..339e03800d98 100644
--- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
+++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=sys-libs/ncurses:0= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0= )
 SLOT=0
 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=a944448f568e57bb9f221cd1f437ab09
+_eclasses_=epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_md5_=c97a54ea522e76af98a9b4e7e29e79cc
diff --git a/metadata/md5-cache/sci-biology/mummer-3.23 b/metadata/md5-cache/sci-biology/mummer-3.23
index a7044ae86afe..3e87421ee71e 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.23
+++ b/metadata/md5-cache/sci-biology/mummer-3.23
@@ -8,5 +8,5 @@ LICENSE=Artistic
 RDEPEND=app-shells/tcsh dev-lang/perl
 SLOT=0
 SRC_URI=mirror://sourceforge/mummer/MUMmer3.23.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=c256f298b416306c1be7005e7877f7b9
diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
index 98bb95c7ec26..94e4b219fdf9 100644
--- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
+++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile install prepare setup
-DEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt )
+DEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt ) virtual/pkgconfig
 DESCRIPTION=Development toolkit and applications for computational biology, including BLAST
 EAPI=5
 HOMEPAGE=https://www.ncbi.nlm.nih.gov/
@@ -9,5 +9,5 @@ LICENSE=public-domain
 RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt )
 SLOT=0
 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	prefix	de7d8e2b10085ed5ff09ad70e4753e5c	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=8bcc533f96e3c3fe8bf6e5b090a4dacd
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	prefix	de7d8e2b10085ed5ff09ad70e4753e5c	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=f4fd3d16b0f57ddd5ddff7eb3342f37e
diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
index c1799cdc1c98..acc29aa9b6e2 100644
--- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
+++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
@@ -1,4 +1,4 @@
-BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=xml? ( dev-libs/libxml2 )
 DESCRIPTION=Tools for processing phylogenetic trees
@@ -10,5 +10,5 @@ LICENSE=BSD
 RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw
 SLOT=0
 SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=fac40fe86b457a75883a5eb465ce18d8
diff --git a/metadata/md5-cache/sci-biology/phylip-3.698 b/metadata/md5-cache/sci-biology/phylip-3.698
index e264d51db1dd..be5cbe1016d9 100644
--- a/metadata/md5-cache/sci-biology/phylip-3.698
+++ b/metadata/md5-cache/sci-biology/phylip-3.698
@@ -9,5 +9,5 @@ LICENSE=BSD-2
 RDEPEND=x11-libs/libXaw !dev-lang/elixir
 SLOT=0
 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.698.zip
-_eclasses_=edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=b3a777c086ea4a6cd489efcb5bde7b66
diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103
index 8f5e8ffe7de2..bf20157c0722 100644
--- a/metadata/md5-cache/sci-biology/picard-1.103
+++ b/metadata/md5-cache/sci-biology/picard-1.103
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons
 RESTRICT=!test? ( test ) !test? ( test )
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	fb9e1462d72ecaf7c91ae1d169606d9f	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	378e4cda228ea0231a0ac283cb2ad25c	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	51fb0a4707d58382310390ad47ab0ab0	java-pkg-2	45c44ec10db6affb3ebee1ac72039888	java-utils-2	2440f41421207d084e5e3f1fb001b34e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=09627e6bb74ee9997324bde01a56bcbd
diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514
index 90cfdf7347f5..02a035cee24d 100644
--- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514
+++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack
 SLOT=0
 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=570249dc23feeff7b47b3e81df358196
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_md5_=84c4fdcaa7feed7785c42d566070ab94
diff --git a/metadata/md5-cache/sci-biology/probcons-1.12-r1 b/metadata/md5-cache/sci-biology/probcons-1.12-r1
index 0fa6b81e67db..d52d8714d5ff 100644
--- a/metadata/md5-cache/sci-biology/probcons-1.12-r1
+++ b/metadata/md5-cache/sci-biology/probcons-1.12-r1
@@ -1,11 +1,11 @@
-DEFINED_PHASES=compile install postinst prepare
+DEFINED_PHASES=compile install postinst
 DESCRIPTION=Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences
-EAPI=5
+EAPI=7
 HOMEPAGE=http://probcons.stanford.edu/
 KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 RDEPEND=!sci-geosciences/gmt sci-visualization/gnuplot
 SLOT=0
 SRC_URI=http://probcons.stanford.edu/probcons_v1_12.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=19a24bd3c543d599d5b3392e66b7022e
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_md5_=0f60285a7f7c2929aed4404425c3fc40
diff --git a/metadata/md5-cache/sci-biology/psipred-3.5 b/metadata/md5-cache/sci-biology/psipred-3.5
index 0de9bcbab399..2309e9b70023 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.5
+++ b/metadata/md5-cache/sci-biology/psipred-3.5
@@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh sci-biology/ncbi-tools sci-biology/update-blastdb
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.5.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	prefix	de7d8e2b10085ed5ff09ad70e4753e5c	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=44623bcd0b50824824056739420b4873
+_eclasses_=epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	multilib	d410501a125f99ffb560b0c523cd3d1e	prefix	de7d8e2b10085ed5ff09ad70e4753e5c	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	versionator	d3fb3ba33acc3bbbdc4d7970227c100d
+_md5_=2d88f4808280c081fe9c75555b6d5c9e
diff --git a/metadata/md5-cache/sci-biology/pysam-0.16.0.1 b/metadata/md5-cache/sci-biology/pysam-0.16.0.1
index d1b8aba0dc1a..bbb3e2b8e04d 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.16.0.1
+++ b/metadata/md5-cache/sci-biology/pysam-0.16.0.1
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_7 python_targets_python3_8 python_targe
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.16.0.1.tar.gz -> pysam-0.16.0.1.tar.gz
-_eclasses_=distutils-r1	16579e06f8839831bd5c03455bb87e3f	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	6d099888c5b4dd4868c26508df307e95	python-utils-r1	2dc8e06a3429719b43e9140f7292a425	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=distutils-r1	d8655e1387589a2e1930339b1627d5c1	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	26e4ad0a4190b14f70973dc253e86535	python-utils-r1	3ea803de86891185c7b1db2c0b5bc8c8	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=24cbd77fb49bf7dfa36311bf5973256d
diff --git a/metadata/md5-cache/sci-biology/raxml-7.2.6 b/metadata/md5-cache/sci-biology/raxml-7.2.6
index 48dccc26328f..d77da207383c 100644
--- a/metadata/md5-cache/sci-biology/raxml-7.2.6
+++ b/metadata/md5-cache/sci-biology/raxml-7.2.6
@@ -1,6 +1,6 @@
-DEFINED_PHASES=compile install prepare
+DEFINED_PHASES=compile configure install
 DESCRIPTION=Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees
-EAPI=5
+EAPI=7
 HOMEPAGE=http://wwwkramer.in.tum.de/exelixis/software.html
 IUSE=cpu_flags_x86_sse3 +threads
 KEYWORDS=~amd64 ~x86
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 REQUIRED_USE=cpu_flags_x86_sse3
 SLOT=0
 SRC_URI=http://wwwkramer.in.tum.de/exelixis/software/RAxML-7.2.6.tar.bz2
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=f2b8e0b4e5701d9b20bcbf9151c9b868
+_eclasses_=edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=14b77d8b019468c10a65f1358be0d8ae
diff --git a/metadata/md5-cache/sci-biology/repeatmasker-libraries-20120418 b/metadata/md5-cache/sci-biology/repeatmasker-libraries-20120418
index a1dfb6bb2bee..0dd1ccd3f778 100644
--- a/metadata/md5-cache/sci-biology/repeatmasker-libraries-20120418
+++ b/metadata/md5-cache/sci-biology/repeatmasker-libraries-20120418
@@ -1,10 +1,10 @@
 DEFINED_PHASES=install nofetch
 DESCRIPTION=A special version of RepBase used by RepeatMasker
-EAPI=5
+EAPI=7
 HOMEPAGE=http://repeatmasker.org/
 KEYWORDS=~amd64 ~x86
 LICENSE=all-rights-reserved
 RESTRICT=fetch
 SLOT=0
 SRC_URI=repeatmaskerlibraries-20120418.tar.gz
-_md5_=58d2bc25a79cc7136e64f302004caa16
+_md5_=e6c77d1df625fce2b312351e310cfae8
diff --git a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
index a4bd22db413c..51ba3ad37b1a 100644
--- a/metadata/md5-cache/sci-biology/rmblast-1.2-r1
+++ b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
@@ -8,5 +8,5 @@ LICENSE=OSL-2.1
 RDEPEND=dev-libs/boost
 SLOT=0
 SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz https://dev.gentoo.org/~mgorny/dist/rmblast-1.2-gcc47.patch.bz2
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=1283e94bf3a231a794a498d2769aaa7d
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=2f7831c50cdca352d9a7b340a8bee159
diff --git a/metadata/md5-cache/sci-biology/samtools-1.10 b/metadata/md5-cache/sci-biology/samtools-1.10
index fb63078bf880..3964008c0138 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.10
+++ b/metadata/md5-cache/sci-biology/samtools-1.10
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DEFINED_PHASES=compile configure install prepare test
 DEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:0=[unicode] sys-libs/zlib:=
 DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:0=[unicode] sys-libs/zlib:=
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.10.tar.bz2
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
 _md5_=67d56fa48d3a475403ad1a726690e370
diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
index ee69a5d36d4a..a99f7bf0116c 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
@@ -11,5 +11,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seq
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz
-_eclasses_=cmake	314a813be2f09820e8978cdee941e501	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	518e4c9a6a38dfd7afc54b6a7c5de3da	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	multibuild	6b3d5ee849dafe6cdfd7b859c211fb01	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=8796fa7c1594d16d8a9b96920de5cf2b
diff --git a/metadata/md5-cache/sci-biology/sibsim4-0.20 b/metadata/md5-cache/sci-biology/sibsim4-0.20
index 04cf8499c56d..82b4af5ab964 100644
--- a/metadata/md5-cache/sci-biology/sibsim4-0.20
+++ b/metadata/md5-cache/sci-biology/sibsim4-0.20
@@ -1,10 +1,10 @@
-DEFINED_PHASES=install prepare
+DEFINED_PHASES=configure install
 DESCRIPTION=A rewrite and improvement upon sim4, a DNA-mRNA aligner
-EAPI=5
+EAPI=7
 HOMEPAGE=http://sibsim4.sourceforge.net/
 KEYWORDS=amd64 x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/sibsim4/SIBsim4-0.20.tar.gz
 _eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
-_md5_=84a29c8972011ec4b86f3c8235a7b5d2
+_md5_=da65f25e1cebcf8c22efbffb6b2b5c95
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index d5b76402ff7c..2b21f73281a5 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -1,12 +1,13 @@
-DEFINED_PHASES=prepare
-DEPEND=x11-libs/wxGTK:3.0[X] >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEFINED_PHASES=configure prepare
+DEPEND=x11-libs/wxGTK:3.0[X]
 DESCRIPTION=A phylogenetic tree viewer
-EAPI=5
+EAPI=7
 HOMEPAGE=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
 KEYWORDS=amd64 x86
 LICENSE=GPL-2
 RDEPEND=x11-libs/wxGTK:3.0[X]
 SLOT=0
 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	wxwidgets	407be90c398e52298054aff2093912a3
-_md5_=ce129f3e61a849cfd3654e5a9fa4b17a
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	wxwidgets	407be90c398e52298054aff2093912a3
+_md5_=a65777d44ca1562d5714ec2fa4c04a02
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index 1d891eff3909..5ca1d2bba708 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 SLOT=0
 SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz
-_eclasses_=cmake	314a813be2f09820e8978cdee941e501	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	518e4c9a6a38dfd7afc54b6a7c5de3da	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=854887494464770d2ebd028de122105d
diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
index 1fe4a839ba18..760548d2f6fb 100644
--- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
+++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/openssl:0= media-libs/libpng:0= !<sci-biology/ucsc-genome-brows
 REQUIRED_USE=server? ( mysql )
 SLOT=0
 SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	1d03df021d958f89f4cc78e289d0b116	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	990ad6a000cf18d1ef87117e8c7b0a54	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=5da647f678ee4911d61a873bbc61afd9
diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1
index 9ac008683ffc..7a0449066d2a 100644
--- a/metadata/md5-cache/sci-biology/unafold-3.8-r1
+++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1
@@ -9,5 +9,5 @@ LICENSE=unafold
 RDEPEND=media-libs/freeglut media-libs/gd virtual/opengl
 SLOT=0
 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2
-_eclasses_=edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=140380fdaf468f37ce9bb27d0026ec8e
diff --git a/metadata/md5-cache/sci-biology/update-blastdb-12.0.0 b/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
index 7d27a8c3b21b..f8389879cf7b 100644
--- a/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
+++ b/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
@@ -1,11 +1,10 @@
 DEFINED_PHASES=install
 DESCRIPTION=update_blastdb.pl for local blast db maintainance
-EAPI=5
+EAPI=7
 HOMEPAGE=http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 RDEPEND=dev-lang/perl !sci-biology/ncbi-tools++
 SLOT=0
 SRC_URI=ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/12_0_0/ncbi_cxx--12_0_0.tar.gz
-_eclasses_=estack	055c42df72f76a4f45ec92b35e83cd56	versionator	d3fb3ba33acc3bbbdc4d7970227c100d
-_md5_=bc882208706b78e231cbfd78c7b5799e
+_md5_=899b0a0aa3b8be8b9530aff68709f438
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14
index 16bf15b03d9b..39d0f9e93f4a 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.14
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare
-DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Tools for working with VCF (Variant Call Format) files
 EAPI=6
 HOMEPAGE=http://vcftools.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=LGPL-3
 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
 SLOT=0
 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=82adffd84f2a93745e683b498b79fbe8
diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10
index 0c7f1f1a92c9..4f5577e37bc6 100644
--- a/metadata/md5-cache/sci-biology/velvet-1.2.10
+++ b/metadata/md5-cache/sci-biology/velvet-1.2.10
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=420632435bf1efe77241192fff993a20
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	c0964e43ba712cb933da5f65b958fa88	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=b07b48444158719f00b415b6f8b8e6a1
diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
index d59d50a9ceaa..1142f49f5cbd 100644
--- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
+++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
@@ -9,5 +9,5 @@ LICENSE=BSD
 RDEPEND=~sci-biology/hmmer-2.3.2
 SLOT=0
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz https://dev.gentoo.org/~mgorny/dist/wise-2.4.0_alpha-patchset.tar.bz2
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=5089373e8fa38f080134e22ddf59264c
+_eclasses_=epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	versionator	d3fb3ba33acc3bbbdc4d7970227c100d
+_md5_=d5566134a062c60e1c2223a1b1283862
diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2
index 7e27fe10e309..edcb0908c6fe 100644
--- a/metadata/md5-cache/sci-biology/yass-1.14-r2
+++ b/metadata/md5-cache/sci-biology/yass-1.14-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare
-DEPEND=dmalloc? ( dev-libs/dmalloc ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dmalloc? ( dev-libs/dmalloc ) sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
 DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds
 EAPI=6
 HOMEPAGE=http://bioinfo.lifl.fr/yass/
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dmalloc? ( dev-libs/dmalloc )
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz
-_eclasses_=autotools	4ba6c345bf49883c84d5fa5c9bf40c0b	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	24921b57d6561d87cbef4916a296ada4
+_eclasses_=autotools	9e63f92c2a5d867fea55ecb160c7d354	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	9f813bb3c47cf2e60619a663b87c5f4e	estack	055c42df72f76a4f45ec92b35e83cd56	eutils	2d5b3f4b315094768576b6799e4f926e	gnuconfig	9f91b4b0c84e734a87492d4293f03de5	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	24921b57d6561d87cbef4916a296ada4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3
author	V3n3RiX <venerix@redcorelinux.org>	2021-04-28 20:21:43 +0100
committer	V3n3RiX <venerix@redcorelinux.org>	2021-04-28 20:21:43 +0100
commit	40aaaa64e86ba6710bbeb31c4615a6ce80e75e11 (patch)
tree	758c221bad35c9288d0bd6df9c7dfc226728e52c /metadata/md5-cache/sci-biology
parent	8d5dbd847cbc704a6a06405856e94b461011afe3 (diff)