diff options
author | V3n3RiX <venerix@koprulu.sector> | 2024-04-27 23:59:43 +0100 |
---|---|---|
committer | V3n3RiX <venerix@koprulu.sector> | 2024-04-27 23:59:43 +0100 |
commit | 413421048cc2b0df9a218f0ab3cb151846809eb5 (patch) | |
tree | 3fd887035aa0f5b65d7f147ab77caa98c44c148d /metadata/md5-cache/sci-biology | |
parent | 3e42d1577189af123b773dc0f11e5419035308c8 (diff) |
gentoo auto-resync : 27:04:2024 - 23:59:42
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r-- | metadata/md5-cache/sci-biology/HTSeq-2.0.2 | 17 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/HTSeq-9999 | 16 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/Manifest.gz | bin | 22514 -> 22181 bytes | |||
-rw-r--r-- | metadata/md5-cache/sci-biology/maq-0.7.1-r4 (renamed from metadata/md5-cache/sci-biology/maq-0.7.1-r3) | 4 | ||||
-rw-r--r-- | metadata/md5-cache/sci-biology/maqview-0.2.5-r5 (renamed from metadata/md5-cache/sci-biology/maqview-0.2.5-r4) | 4 |
5 files changed, 4 insertions, 37 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2 deleted file mode 100644 index cf3a53ad25b9..000000000000 --- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 +++ /dev/null @@ -1,17 +0,0 @@ -BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.4.4[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-69.0.3[python_targets_python3_10(-)?,python_targets_python3_11(-)?] -DEFINED_PHASES=compile configure install prepare test -DEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) -DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files -EAPI=8 -HOMEPAGE=https://htseq.readthedocs.io/ -INHERIT=distutils-r1 flag-o-matic -IUSE=test python_targets_python3_10 python_targets_python3_11 -KEYWORDS=~amd64 -LICENSE=GPL-3+ -RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) -REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) -RESTRICT=!test? ( test ) -SLOT=0 -SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz -_eclasses_=distutils-r1 a9e13d91cb9541a054827cb1d957a660 flag-o-matic 288c54efeb5e2aa70775e39032695ad4 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 8a28fa6d3e3bc96ff8a7eff2badbe71f python-utils-r1 a1229a86bd0db058e474a2d7d9191cca toolchain-funcs e56c7649b804f051623c8bc1a1c44084 -_md5_=29d76005d4f5d0a05fc0182fba12f7f5 diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999 deleted file mode 100644 index bf65536cac3f..000000000000 --- a/metadata/md5-cache/sci-biology/HTSeq-9999 +++ /dev/null @@ -1,16 +0,0 @@ -BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.4.4[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-69.0.3[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl] -DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) -DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files -EAPI=8 -HOMEPAGE=https://htseq.readthedocs.io/ -INHERIT=distutils-r1 flag-o-matic git-r3 -IUSE=test python_targets_python3_10 python_targets_python3_11 -LICENSE=GPL-3+ -PROPERTIES=live -RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) -REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 ) -RESTRICT=!test? ( test ) -SLOT=0 -_eclasses_=distutils-r1 a9e13d91cb9541a054827cb1d957a660 flag-o-matic 288c54efeb5e2aa70775e39032695ad4 git-r3 fbb2889c81f3a05910c1524db69425c1 multibuild d67e78a235f541871c7dfe4cf7931489 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing 30ead54fa2e2b5f9cd4e612ffc34d0fe ninja-utils 2df4e452cea39a9ec8fb543ce059f8d6 out-of-source-utils 1a9007554652a6e627edbccb3c25a439 python-r1 8a28fa6d3e3bc96ff8a7eff2badbe71f python-utils-r1 a1229a86bd0db058e474a2d7d9191cca toolchain-funcs e56c7649b804f051623c8bc1a1c44084 -_md5_=29d76005d4f5d0a05fc0182fba12f7f5 diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz Binary files differindex 53e33c9fb27e..83d281742849 100644 --- a/metadata/md5-cache/sci-biology/Manifest.gz +++ b/metadata/md5-cache/sci-biology/Manifest.gz diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r3 b/metadata/md5-cache/sci-biology/maq-0.7.1-r4 index 0a07df4412f4..cb7cfca3b4f4 100644 --- a/metadata/md5-cache/sci-biology/maq-0.7.1-r3 +++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r4 @@ -3,7 +3,7 @@ DEFINED_PHASES=install prepare DEPEND=sys-libs/zlib DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes EAPI=8 -HOMEPAGE=http://maq.sourceforge.net/ +HOMEPAGE=https://maq.sourceforge.net/ INHERIT=autotools KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=GPL-3 @@ -11,4 +11,4 @@ RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz _eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 -_md5_=063e8f4add19e5b685018dfb11be0196 +_md5_=6e45ccc697f8a411f0b0283eb0019d32 diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r4 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 index 3981958c41df..7f4338b3947b 100644 --- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r4 +++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 @@ -3,7 +3,7 @@ DEFINED_PHASES=prepare DEPEND=media-libs/freeglut sys-libs/zlib DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler EAPI=8 -HOMEPAGE=http://maq.sourceforge.net/ +HOMEPAGE=https://maq.sourceforge.net/ INHERIT=autotools KEYWORDS=~amd64 ~x86 LICENSE=GPL-3 @@ -11,4 +11,4 @@ RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq SLOT=0 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz _eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 -_md5_=ce6e22a8dca500f24263e27d73b9eda4 +_md5_=eb464e54d79a241ceaa0c79e8bdae8ae |