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authorV3n3RiX <venerix@koprulu.sector>2023-06-09 21:49:23 +0100
committerV3n3RiX <venerix@koprulu.sector>2023-06-09 21:49:23 +0100
commitb8cc45d2d4557cadf73e3411149ffb57ebd8c09b (patch)
tree36e9e50b71907f13105d2d76cda896f2097f8201 /metadata/md5-cache/sci-biology
parent60010a4cd6d7c12aaa62f00b5e8a158ed24efba6 (diff)
gentoo auto-resync : 09:06:2023 - 21:49:23
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/Manifest.gzbin21226 -> 21243 bytes
-rw-r--r--metadata/md5-cache/sci-biology/augustus-2.5.54
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-1.6.9-r14
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r24
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r14
-rw-r--r--metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r14
-rw-r--r--metadata/md5-cache/sci-biology/biosql-1.0.1-r24
-rw-r--r--metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r14
-rw-r--r--metadata/md5-cache/sci-biology/clustalw-1.83-r44
-rw-r--r--metadata/md5-cache/sci-biology/clustalw-2.1-r24
-rw-r--r--metadata/md5-cache/sci-biology/clustalx-2.1-r34
-rw-r--r--metadata/md5-cache/sci-biology/eugene-4.1d-r14
-rw-r--r--metadata/md5-cache/sci-biology/finchtv-1.3.1-r34
-rw-r--r--metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r14
-rw-r--r--metadata/md5-cache/sci-biology/infernal-1.0.2-r14
-rw-r--r--metadata/md5-cache/sci-biology/mothur-1.27.0-r14
-rw-r--r--metadata/md5-cache/sci-biology/muscle-3.8.314
-rw-r--r--metadata/md5-cache/sci-biology/pals-1.0-r24
-rw-r--r--metadata/md5-cache/sci-biology/phyml-2.4.5-r44
-rw-r--r--metadata/md5-cache/sci-biology/piler-1.0-r24
-rw-r--r--metadata/md5-cache/sci-biology/pilercr-1.0-r24
-rw-r--r--metadata/md5-cache/sci-biology/probcons-1.12-r14
-rw-r--r--metadata/md5-cache/sci-biology/sibsim4-0.204
-rw-r--r--metadata/md5-cache/sci-biology/stride-20011129-r14
-rw-r--r--metadata/md5-cache/sci-biology/tree-puzzle-5.24
-rw-r--r--metadata/md5-cache/sci-biology/treeviewx-0.5.1-r34
-rw-r--r--metadata/md5-cache/sci-biology/trf-4.04-r24
-rw-r--r--metadata/md5-cache/sci-biology/uchime-4.2.40-r14
28 files changed, 54 insertions, 54 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 495ada946e09..75d0675574b9 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-biology/augustus-2.5.5 b/metadata/md5-cache/sci-biology/augustus-2.5.5
index f5bde831abdf..9bf60fcfd547 100644
--- a/metadata/md5-cache/sci-biology/augustus-2.5.5
+++ b/metadata/md5-cache/sci-biology/augustus-2.5.5
@@ -4,9 +4,9 @@ EAPI=7
HOMEPAGE=http://augustus.gobics.de/
INHERIT=toolchain-funcs
IUSE=examples
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=Artistic
SLOT=0
SRC_URI=http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=80962b244c7531e320f35904727b5bd5
+_md5_=4c500e601e76f119e63d2dc13321648c
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1
index fb50cdef3c04..42d74bbb228a 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9-r1
@@ -6,7 +6,7 @@ EAPI=8
HOMEPAGE=http://www.bioperl.org/
INHERIT=perl-module
IUSE=minimal graphviz sqlite +db +network +run test
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=|| ( Artistic GPL-1+ )
PDEPEND=db? ( >=sci-biology/bioperl-db-1.6.9 ) network? ( >=sci-biology/bioperl-network-1.6.9 ) run? ( >=sci-biology/bioperl-run-1.6.9 )
RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Array-Compare dev-perl/YAML dev-perl/Bio-ASN1-EntrezGene dev-perl/Clone dev-perl/Convert-Binary-C dev-perl/Data-Stag dev-perl/GD dev-perl/Graph >=dev-perl/HTML-Parser-3.60 dev-perl/List-MoreUtils dev-perl/Math-Random dev-perl/PostScript dev-perl/Set-Scalar dev-perl/SOAP-Lite dev-perl/Sort-Naturally dev-perl/Spreadsheet-ParseExcel >=virtual/perl-Storable-2.05 >=dev-perl/SVG-2.26 >=dev-perl/SVG-Graph-0.01 dev-perl/URI >=dev-perl/XML-DOM-XPath-0.13 dev-perl/XML-Parser >=dev-perl/XML-SAX-0.15 dev-perl/XML-Simple dev-perl/XML-Twig >=dev-perl/XML-Writer-0.4 dev-perl/XML-DOM dev-perl/XML-XPath ) graphviz? ( dev-perl/GraphViz ) sqlite? ( dev-perl/DBD-SQLite ) dev-lang/perl:=
@@ -15,4 +15,4 @@ RESTRICT=!test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 perl-functions c3fca037246e877693badea0df3b0ef8 perl-module 8c55459fea879ccdec282839a3b22f78 readme.gentoo-r1 204091a2cde6179cd9d3db26d09412d3 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=e2bc1ba3ce7d3071e3bfff1ff59b93fa
+_md5_=275c67756e8440c392c02c29c75e1388
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r2 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r2
index 5675378138a7..e0534ee66438 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r2
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9-r2
@@ -6,11 +6,11 @@ EAPI=8
HOMEPAGE=http://www.bioperl.org/
INHERIT=perl-module
IUSE=test test
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=|| ( Artistic GPL-1+ )
RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/biosql dev-lang/perl:=
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 perl-functions c3fca037246e877693badea0df3b0ef8 perl-module 8c55459fea879ccdec282839a3b22f78 readme.gentoo-r1 204091a2cde6179cd9d3db26d09412d3 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=ec0bd67d52c316d61cf5adb758afcf04
+_md5_=56259564f94ae015e0cdd27bc2db8b21
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1
index 8d35c5405547..840a3b824f87 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9-r1
@@ -6,11 +6,11 @@ EAPI=8
HOMEPAGE=http://www.bioperl.org/
INHERIT=perl-module
IUSE=test
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=|| ( Artistic GPL-1+ )
RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 perl-functions c3fca037246e877693badea0df3b0ef8 perl-module 8c55459fea879ccdec282839a3b22f78 readme.gentoo-r1 204091a2cde6179cd9d3db26d09412d3 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=062cfc681671741bdf0ce203cd9f0854
+_md5_=6c074e2b53c3e7242c6ed1e352537670
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1
index d6b625656774..38e93d65b951 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9-r1
@@ -6,11 +6,11 @@ EAPI=8
HOMEPAGE=http://www.bioperl.org/
INHERIT=perl-module
IUSE=minimal test test
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=|| ( Artistic GPL-1+ )
RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl/XML-Twig dev-perl/IO-String dev-perl/IPC-Run dev-perl/File-Sort ) dev-lang/perl:=
RESTRICT=test !test? ( test )
SLOT=0
SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 perl-functions c3fca037246e877693badea0df3b0ef8 perl-module 8c55459fea879ccdec282839a3b22f78 readme.gentoo-r1 204091a2cde6179cd9d3db26d09412d3 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=89a50a53d48e4dddb7f36a35c0407fdb
+_md5_=517668f69988f82c6a81d26d36633342
diff --git a/metadata/md5-cache/sci-biology/biosql-1.0.1-r2 b/metadata/md5-cache/sci-biology/biosql-1.0.1-r2
index 2db325d864b6..3cb02e1ff37b 100644
--- a/metadata/md5-cache/sci-biology/biosql-1.0.1-r2
+++ b/metadata/md5-cache/sci-biology/biosql-1.0.1-r2
@@ -4,9 +4,9 @@ DESCRIPTION=A generic bioinformatics relational database model
EAPI=8
HOMEPAGE=https://biosql.org/
IUSE=mysql postgres
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=LGPL-3
RDEPEND=mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) dev-lang/perl
SLOT=0
SRC_URI=https://biosql.org/DIST/biosql-1.0.1.tar.bz2
-_md5_=17f139bd8463877fe11118d9b9cc16e2
+_md5_=cc4726c8c2ff5b7c796abd2a154af22a
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
index e69c94df9fd2..1f9de70fb4e5 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
@@ -5,10 +5,10 @@ DESCRIPTION=Scalable multiple alignment of protein sequences
EAPI=8
HOMEPAGE=http://www.clustal.org/omega/
INHERIT=autotools
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=GPL-2
RDEPEND=dev-libs/argtable
SLOT=0
SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
_eclasses_=autotools 6ae9a4347149b19a112caa1182d03bde gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 9d3a9a889a6fa62ae794f817c156491b multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=1fe31c7bf68a0e3d5cd862d476a40e5b
+_md5_=e2928c88a8676586ff3c5e4a7f534608
diff --git a/metadata/md5-cache/sci-biology/clustalw-1.83-r4 b/metadata/md5-cache/sci-biology/clustalw-1.83-r4
index 5162a5cfb354..6c70b4b926e8 100644
--- a/metadata/md5-cache/sci-biology/clustalw-1.83-r4
+++ b/metadata/md5-cache/sci-biology/clustalw-1.83-r4
@@ -3,9 +3,9 @@ DESCRIPTION=General purpose multiple alignment program for DNA and proteins
EAPI=8
HOMEPAGE=http://www.embl-heidelberg.de/~seqanal/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 ~ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos
+KEYWORDS=amd64 ~ppc ppc64 sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos
LICENSE=clustalw
SLOT=1
SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/clustalw1.83.UNIX.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=23aaae23f03e4fab6b2db5e41d8328e4
+_md5_=48325a27354b2683cb1b693a641b7ab7
diff --git a/metadata/md5-cache/sci-biology/clustalw-2.1-r2 b/metadata/md5-cache/sci-biology/clustalw-2.1-r2
index 53c95dfd69b1..292b56715d8b 100644
--- a/metadata/md5-cache/sci-biology/clustalw-2.1-r2
+++ b/metadata/md5-cache/sci-biology/clustalw-2.1-r2
@@ -2,8 +2,8 @@ DEFINED_PHASES=install
DESCRIPTION=General purpose multiple alignment program for DNA and proteins
EAPI=8
HOMEPAGE=http://www.clustal.org/
-KEYWORDS=amd64 ~ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~ppc-macos
+KEYWORDS=amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos
LICENSE=GPL-3 LGPL-3
SLOT=2
SRC_URI=http://www.clustal.org/download/current/clustalw-2.1.tar.gz
-_md5_=2eca1e9c94ccbb0f35ccc59c88a4ff03
+_md5_=f31e34b6f62eb36c64c11cb4ad763a55
diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r3 b/metadata/md5-cache/sci-biology/clustalx-2.1-r3
index 2bf2f4609b14..0ed50c7ddbae 100644
--- a/metadata/md5-cache/sci-biology/clustalx-2.1-r3
+++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r3
@@ -4,10 +4,10 @@ DESCRIPTION=Graphical interface for the ClustalW multiple alignment program
EAPI=7
HOMEPAGE=https://www.ebi.ac.uk/Tools/msa/clustalw2/
INHERIT=desktop qmake-utils
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=GPL-3 LGPL-3
RDEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5 >=sci-biology/clustalw-2.1
SLOT=0
SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz https://dev.gentoo.org/~jlec/distfiles/clustalx.png.xz
_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d multilib c19072c3cd7ac5cb21de013f7e9832e0 qmake-utils 59420c906278d16deaaa629f9d115707 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=3f60f1952758458fc3cd4e2789a942f5
+_md5_=26ebb7c606a394252d2be9f3c156984f
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d-r1 b/metadata/md5-cache/sci-biology/eugene-4.1d-r1
index fffdf9eb43db..04763a13995b 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d-r1
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d-r1
@@ -5,11 +5,11 @@ DESCRIPTION=Prokaryotic and Eukaryotic gene predictor
EAPI=8
HOMEPAGE=http://eugene.toulouse.inra.fr/
INHERIT=autotools
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=Artistic
RDEPEND=media-libs/gd[png] media-libs/libpng:=
RESTRICT=test
SLOT=0
SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
_eclasses_=autotools 6ae9a4347149b19a112caa1182d03bde gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 9d3a9a889a6fa62ae794f817c156491b multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=8b37e07736e31e675410189d0ff61791
+_md5_=88a096386941104cea7615974ecef526
diff --git a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
index df5d67ae2b12..fddda237a67f 100644
--- a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
+++ b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
@@ -3,9 +3,9 @@ DESCRIPTION=Graphical viewer for chromatogram files
EAPI=7
HOMEPAGE=http://www.geospiza.com/finchtv/
INHERIT=desktop
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
+KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=finchtv
SLOT=0
SRC_URI=http://www.geospiza.com/finchtv/download/programs/linux/finchtv_1_3_1.tar.gz
_eclasses_=desktop 021728fdc1b03b36357dbc89489e0f0d
-_md5_=26ca9e399e95eecb3e72d2d0092706d3
+_md5_=aa1653d409addfdbdeee78e05f3496f5
diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
index c33b45898eff..7fc0b8e6d573 100644
--- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
+++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
@@ -3,9 +3,9 @@ DESCRIPTION=A eukaryotic gene finding system from TIGR
EAPI=7
HOMEPAGE=http://www.cbcb.umd.edu/software/GlimmerHMM/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=Artistic
SLOT=0
SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.1.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=9fc33629a982f35b93c18da772894fdd
+_md5_=7e23482cbed8382298f1fb42831ae018
diff --git a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
index 2fc3fb12ac69..bd51ccd7a7a6 100644
--- a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
+++ b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
@@ -5,10 +5,10 @@ EAPI=7
HOMEPAGE=http://infernal.janelia.org/
INHERIT=toolchain-funcs
IUSE=mpi
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=GPL-3
RDEPEND=mpi? ( virtual/mpi )
SLOT=0
SRC_URI=ftp://selab.janelia.org/pub/software/infernal/infernal-1.0.2.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=a3b1f788e8f5b38e41b3a9e38f91fe88
+_md5_=ed6542a9fbe6d76d42075ee482329775
diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
index 0545894407bd..c101821ad3f3 100644
--- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
+++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
@@ -6,10 +6,10 @@ EAPI=7
HOMEPAGE=https://www.mothur.org/
INHERIT=flag-o-matic fortran-2 toolchain-funcs
IUSE=mpi +readline
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=GPL-3
RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran
SLOT=0
SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip
_eclasses_=edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 16483e58fadb0d47b4528f0aa7e171f6 fortran-2 40c4450f1c4ecb2ee694d96e1958d4ea multilib c19072c3cd7ac5cb21de013f7e9832e0 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e wrapper 4a1902f969e5718126434fc35f3a0d9c
-_md5_=2a931ea6d0536a0cb3441d235f5d2d6b
+_md5_=4d1c6c16f8757994256f73d5be45cb8f
diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31
index 43904742ced5..cf3e8608a3fc 100644
--- a/metadata/md5-cache/sci-biology/muscle-3.8.31
+++ b/metadata/md5-cache/sci-biology/muscle-3.8.31
@@ -3,10 +3,10 @@ DESCRIPTION=Multiple sequence comparison by log-expectation
EAPI=7
HOMEPAGE=https://www.drive5.com/muscle/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 ~ppc x86
+KEYWORDS=amd64 ~ppc ~x86
LICENSE=public-domain
RDEPEND=!sci-libs/libmuscle
SLOT=0
SRC_URI=https://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=373aea64d7c96030dbc1a9c4404f3985
+_md5_=62859cbc1404e079f9f85e83527914cf
diff --git a/metadata/md5-cache/sci-biology/pals-1.0-r2 b/metadata/md5-cache/sci-biology/pals-1.0-r2
index fc03f678d4f1..be05e8cd377a 100644
--- a/metadata/md5-cache/sci-biology/pals-1.0-r2
+++ b/metadata/md5-cache/sci-biology/pals-1.0-r2
@@ -3,9 +3,9 @@ DESCRIPTION=Pairwise Aligner for Long Sequences
EAPI=8
HOMEPAGE=https://www.drive5.com/pals/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=public-domain
SLOT=0
SRC_URI=https://www.drive5.com/pals/pals_source.tar.gz -> pals-1.0.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=03270366228400ac56642b59fb067532
+_md5_=eacca1433c8023d7321f6b8d4fc4b6d4
diff --git a/metadata/md5-cache/sci-biology/phyml-2.4.5-r4 b/metadata/md5-cache/sci-biology/phyml-2.4.5-r4
index c3f6718e4806..e976ca445806 100644
--- a/metadata/md5-cache/sci-biology/phyml-2.4.5-r4
+++ b/metadata/md5-cache/sci-biology/phyml-2.4.5-r4
@@ -3,9 +3,9 @@ DESCRIPTION=Estimation of large phylogenies by maximum likelihood
EAPI=8
HOMEPAGE=http://atgc.lirmm.fr/phyml/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 ~ppc x86
+KEYWORDS=amd64 ~ppc ~x86
LICENSE=GPL-2
SLOT=0
SRC_URI=http://www.lirmm.fr/~guindon/phyml_v2.4.5.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=d7f38a7c0005dca5f3da1d1fbd9780ae
+_md5_=07b5d0c4fa7ccf9c50fb8bba0dca57c7
diff --git a/metadata/md5-cache/sci-biology/piler-1.0-r2 b/metadata/md5-cache/sci-biology/piler-1.0-r2
index 86197b2927f4..263b42a55fa2 100644
--- a/metadata/md5-cache/sci-biology/piler-1.0-r2
+++ b/metadata/md5-cache/sci-biology/piler-1.0-r2
@@ -3,10 +3,10 @@ DESCRIPTION=Analysis of repetitive DNA found in genome sequences
EAPI=8
HOMEPAGE=http://www.drive5.com/piler/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=public-domain
RDEPEND=|| ( sci-biology/muscle sci-libs/libmuscle ) sci-biology/pals
SLOT=0
SRC_URI=http://www.drive5.com/piler/piler_source.tar.gz -> piler-1.0.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=5a8dffca1e2b80e93cf1efdff5fd3fd0
+_md5_=5fc094c7ed21adb9be841a3f8cf76801
diff --git a/metadata/md5-cache/sci-biology/pilercr-1.0-r2 b/metadata/md5-cache/sci-biology/pilercr-1.0-r2
index 4fcf9a664a1c..d96473d92e1d 100644
--- a/metadata/md5-cache/sci-biology/pilercr-1.0-r2
+++ b/metadata/md5-cache/sci-biology/pilercr-1.0-r2
@@ -3,9 +3,9 @@ DESCRIPTION=Analysis of Clustered Regularly Interspaced Short Palindromic Repeat
EAPI=8
HOMEPAGE=http://www.drive5.com/pilercr/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=public-domain
SLOT=0
SRC_URI=http://www.drive5.com/pilercr/pilercr1.06.tar.gz -> pilercr-1.0.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=d6fca147863ed9ae98f77d0b6f762060
+_md5_=00fbcbaccb202c9a3276728d356746a2
diff --git a/metadata/md5-cache/sci-biology/probcons-1.12-r1 b/metadata/md5-cache/sci-biology/probcons-1.12-r1
index 183834060c86..25b57d3329f5 100644
--- a/metadata/md5-cache/sci-biology/probcons-1.12-r1
+++ b/metadata/md5-cache/sci-biology/probcons-1.12-r1
@@ -3,10 +3,10 @@ DESCRIPTION=Probabilistic Consistency-based Multiple Alignment of Amino Acid Seq
EAPI=7
HOMEPAGE=http://probcons.stanford.edu/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
+KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=public-domain
RDEPEND=!sci-geosciences/gmt sci-visualization/gnuplot
SLOT=0
SRC_URI=http://probcons.stanford.edu/probcons_v1_12.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=0f60285a7f7c2929aed4404425c3fc40
+_md5_=a0d3d7d9a640d31e0ece26e564b37dda
diff --git a/metadata/md5-cache/sci-biology/sibsim4-0.20 b/metadata/md5-cache/sci-biology/sibsim4-0.20
index 860da10909ed..28d4a5edd590 100644
--- a/metadata/md5-cache/sci-biology/sibsim4-0.20
+++ b/metadata/md5-cache/sci-biology/sibsim4-0.20
@@ -3,9 +3,9 @@ DESCRIPTION=A rewrite and improvement upon sim4, a DNA-mRNA aligner
EAPI=7
HOMEPAGE=http://sibsim4.sourceforge.net/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=GPL-2
SLOT=0
SRC_URI=mirror://sourceforge/sibsim4/SIBsim4-0.20.tar.gz
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=da65f25e1cebcf8c22efbffb6b2b5c95
+_md5_=c9dc1d70a172b8258f2f0e4f3f7e967c
diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1
index 4ef4b0720593..afe8005ace55 100644
--- a/metadata/md5-cache/sci-biology/stride-20011129-r1
+++ b/metadata/md5-cache/sci-biology/stride-20011129-r1
@@ -3,10 +3,10 @@ DESCRIPTION=Protein secondary structure assignment from atomic coordinates
EAPI=7
HOMEPAGE=http://webclu.bio.wzw.tum.de/stride/
INHERIT=toolchain-funcs
-KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux
+KEYWORDS=amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
LICENSE=STRIDE
RESTRICT=mirror bindist
SLOT=0
SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz -> stride-20011129.tar.gz https://dev.gentoo.org/~pacho/stride/stride-20060723-update.patch.bz2
_eclasses_=multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=2503d6480cd2b0d2f44e2b3ffe5c4eb1
+_md5_=a98099ba2092ac37edaa2d1816ea88a1
diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2
index 9ab46123d3e2..76d7f6c49f8e 100644
--- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2
+++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2
@@ -6,11 +6,11 @@ EAPI=8
HOMEPAGE=http://www.tree-puzzle.de
INHERIT=autotools
IUSE=mpi
-KEYWORDS=~amd64 ~ppc x86 ~amd64-linux ~x86-linux ~ppc-macos
+KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos
LICENSE=GPL-2
RDEPEND=mpi? ( virtual/mpi )
RESTRICT=test
SLOT=0
SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz
_eclasses_=autotools 6ae9a4347149b19a112caa1182d03bde gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 9d3a9a889a6fa62ae794f817c156491b multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e
-_md5_=1ab88737aae8e6c93a46631cd7d1bdd9
+_md5_=5b3f19a3bd68515494075eab507798ef
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index 8c783b8a71d4..5c6539415eee 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -5,10 +5,10 @@ DESCRIPTION=A phylogenetic tree viewer
EAPI=7
HOMEPAGE=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
INHERIT=autotools wxwidgets
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=GPL-2
RDEPEND=x11-libs/wxGTK:3.0[X]
SLOT=0
SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
_eclasses_=autotools 6ae9a4347149b19a112caa1182d03bde edos2unix 33e347e171066657f91f8b0c72ec8773 eutils 8f942ebdcf04334697649d4a0bf65a32 flag-o-matic 16483e58fadb0d47b4528f0aa7e171f6 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 9d3a9a889a6fa62ae794f817c156491b multilib c19072c3cd7ac5cb21de013f7e9832e0 strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e wrapper 4a1902f969e5718126434fc35f3a0d9c wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5
-_md5_=c86f5cda4344605df8072acf1799776b
+_md5_=c7a6fb1f3ee6436d674328487c021a24
diff --git a/metadata/md5-cache/sci-biology/trf-4.04-r2 b/metadata/md5-cache/sci-biology/trf-4.04-r2
index 46eab303fe68..61f83fd36499 100644
--- a/metadata/md5-cache/sci-biology/trf-4.04-r2
+++ b/metadata/md5-cache/sci-biology/trf-4.04-r2
@@ -2,9 +2,9 @@ DEFINED_PHASES=install unpack
DESCRIPTION=Tandem Repeats Finder
EAPI=8
HOMEPAGE=https://tandem.bu.edu/trf/trf.html
-KEYWORDS=amd64 x86
+KEYWORDS=amd64 ~x86
LICENSE=trf
RESTRICT=mirror bindist
SLOT=0
SRC_URI=https://tandem.bu.edu/trf/downloads/trf404.linux
-_md5_=44fad2daec87377702c578544bf008e5
+_md5_=1839ce18db10bbc511a18e93309a3819
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1 b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1
index aee56481e6e2..d61afed00a5d 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40-r1
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40-r1
@@ -4,9 +4,9 @@ DESCRIPTION=Fast, accurate chimera detection
EAPI=8
HOMEPAGE=https://www.drive5.com/usearch/manual/uchime_algo.html
INHERIT=cmake
-KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
+KEYWORDS=amd64 ~x86 ~amd64-linux ~x86-linux
LICENSE=public-domain
SLOT=0
SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz
_eclasses_=cmake 7fb5980de96325cbab639f5b2187357c flag-o-matic 16483e58fadb0d47b4528f0aa7e171f6 multilib c19072c3cd7ac5cb21de013f7e9832e0 multiprocessing b4e253ab22cef7b1085e9b67c7a3b730 ninja-utils 76050953ad5b70d7e09a6ca55558db92 toolchain-funcs 14a8ae365191b518fad51caad7a08f3e xdg-utils baea6080dd821f5562d715887954c9d3
-_md5_=75e1e97ed1a0b22c90eebd09f4e46d59
+_md5_=d6d5b7ba215fd8eaf51d3847f4051df6