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authorV3n3RiX <venerix@koprulu.sector>2024-03-22 13:00:52 +0000
committerV3n3RiX <venerix@koprulu.sector>2024-03-22 13:00:52 +0000
commita9715695537fe2582eaabd4a0d2cbe2322c01735 (patch)
tree4bca37e741d83c1d0ef189c2b3a1206301a8a0a4 /profiles
parent267b3b848468a603048b181330ee73cf0bd99c44 (diff)
gentoo auto-resync : 22:03:2024 - 13:00:51
Diffstat (limited to 'profiles')
-rw-r--r--profiles/Manifest.gzbin203222 -> 203222 bytes
-rw-r--r--profiles/arch/arm64/use.stable.mask4
-rw-r--r--profiles/package.mask7
-rw-r--r--profiles/use.local.desc3
4 files changed, 10 insertions, 4 deletions
diff --git a/profiles/Manifest.gz b/profiles/Manifest.gz
index 36cb176c3d08..8b0724047c07 100644
--- a/profiles/Manifest.gz
+++ b/profiles/Manifest.gz
Binary files differ
diff --git a/profiles/arch/arm64/use.stable.mask b/profiles/arch/arm64/use.stable.mask
index c88283580e06..fd6426126dec 100644
--- a/profiles/arch/arm64/use.stable.mask
+++ b/profiles/arch/arm64/use.stable.mask
@@ -4,10 +4,6 @@
# This file requires eapi 5 or later. New entries go on top.
# Please use the same syntax as in use.mask
-# Ionen Wolkens <ionen@gentoo.org> (2024-01-27)
-# Qt6 is not stable here yet
-qt6
-
# Mart Raudsepp <leio@gentoo.org> (2023-10-03)
# dev-util/sysprof-capture and dev-util/sysprof are not stable yet
sysprof
diff --git a/profiles/package.mask b/profiles/package.mask
index 05697c216b71..da1cc98203b8 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -33,6 +33,13 @@
#--- END OF EXAMPLES ---
+# Hans de Graaff <graaff@gentoo.org> (2024-03-22)
+# Broken with modern compilers, bug 884249. No longer maintained
+# upstream, last release 5 years ago. No reverse dependencies left. Use
+# dev-ruby/concurrent-ruby instead.
+# Removal on 2024-04-22.
+dev-ruby/atomic
+
# Rahil Bhimjiani <me@rahil.rocks> (2024-03-17)
# buildah-1.34.0 isn't getting security fixes from upstream
# https://github.com/containers/buildah/issues/5320
diff --git a/profiles/use.local.desc b/profiles/use.local.desc
index d7fa230be4b0..7c9ab278f5cc 100644
--- a/profiles/use.local.desc
+++ b/profiles/use.local.desc
@@ -7149,6 +7149,9 @@ sci-biology/clustalw-mpi:static-pairalign - Use static (as opposed to dynamic) s
sci-biology/exonerate:utils - Install the follow binaries: esd2esi, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds
sci-biology/fasttree:double-precision - use double precision instead of single-precision floating point (2x memroy required)
sci-biology/mcl:blast - Add support for NCBI BLAST data
+sci-biology/mothur:boost - Depend on dev-libs/boost for make.contigs to read .gz compressed files.
+sci-biology/mothur:gsl - Use sci-libs/gsl to support diversity estimates for estimiator.single.
+sci-biology/mothur:hdf5 - Support Biom format 2.0 for the biom.info command via sci-libs/hdf5.
sci-biology/newick-utils:xml - Uses dev-libs/libxml2 to handle ornaments
sci-biology/ucsc-genome-browser:server - Install genome browser Web application. If this flag is off, only libraries and utilities from the suite are installed.
sci-biology/yass:dmalloc - Enable debugging with the dmalloc library