diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2025-02-14 00:13:14 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2025-02-14 00:13:14 +0000 |
| commit | 4fda045f90a4e301329bddb766e2e12a0b4401de (patch) | |
| tree | 1d486767bfd9de15d6c11d341408385eb7f7debe /sci-biology/augustus | |
| parent | 965058196f44550f3bc491dd85064071e085b776 (diff) | |
gentoo auto-resync : 14:02:2025 - 00:13:14
Diffstat (limited to 'sci-biology/augustus')
| -rw-r--r-- | sci-biology/augustus/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/augustus/augustus-3.5.0.ebuild | 1 | ||||
| -rw-r--r-- | sci-biology/augustus/files/augustus-3.5.0-fix-gcc15.patch | 20 |
3 files changed, 23 insertions, 1 deletions
diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest index 0a483257cf09..626acbeebece 100644 --- a/sci-biology/augustus/Manifest +++ b/sci-biology/augustus/Manifest @@ -1,9 +1,10 @@ AUX augustus-2.5.5-sane-build.patch 5271 BLAKE2B 1ba799aa4d9611087f1455f334dc35616979267bb546aa2ab16f6c8d3d528af84373da482840b455d4d0f0374af24cc3010f6925d4a93c0eb7abe524544fd408 SHA512 5afe12b51b8ce27ef32e8e66dd72be451022757228b4c86dec938b26870885bee06712438a22801a42944d2def8ae8bf4a2d7fdb82e12455c145abcd6f0c4aa1 AUX augustus-3.4.0-missing-cstdint.patch 1102 BLAKE2B af80ef05823b7318db3c9b3440d8634dbbc532e57614ce51ac2be8950a7ee1f72984c3e2fdbc57b9328f84cf639b45625d974b176963deee2e13bb9c94389b16 SHA512 380da23de6489b9e27c83c2d87b3175f4cad1c301e5458c8eb8c6bc1e93a4ece467223408322c581cd5b50d03526f46a10d3a5ab8dea96eb47b06694798402fc +AUX augustus-3.5.0-fix-gcc15.patch 680 BLAKE2B 700bc66f8abd2ecb9c5fa22ca353180a7bf24ba7e5d4b33598aeed75921c2d9d74f4bb8027bcadb54b182576dc24b8c5ec4f5c6691bf4341dcf5e0c5703f328f SHA512 301d4173befd5c55a523c6defdf3161db8759828ab1b993f7ed3d25e3a4e82b840c448ffbb4ae2990e6ce2e01a5849093f9ad6a417bd00f16ea18e2f78e9934b DIST augustus-3.4.0.tar.gz 221652100 BLAKE2B dfc8c98107f5a955f688f3d2976ca936faf2ef7004095f6b9d7c1902a36ca5d3c9aef59cab1b82b56cd5c2abc7b67195c5030111ed68557d53128814b1bf6bab SHA512 ca1df1016589f55527a883429edd5024cbc32c1b32036c81f9df5e0967a7d194f5b7a82109e924f380627427d9731caa478e63cad8cd804c01521aed76d8c4a6 DIST augustus-3.5.0.tar.gz 225918930 BLAKE2B 26e934f3d3f50d183fb0ee7874352c5ac9af9877eaa40a9a6195ae79cfd9a78a321bd9261e8bd3435b1d4984589d0bdd4e0821ba6600c717d6afd95f511702de SHA512 0869e54b3126b3ab2f6fb2c28ff07b779265a139968e5277352f5230d3c317415324ca61dce4a0cd6c3f1fb5399447ae815bec7732a285ce652cf44e6cd23e5d DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f EBUILD augustus-2.5.5.ebuild 911 BLAKE2B 92c56fcf261b64393440c92e0f01b9dae018e082b4addb5759cbfc807183944059775a8482fafcba5c3dc3fc4ca7568c93bd4be546b65a0bc446028a537c71f6 SHA512 a54cc943fa343179edb7d21c9cd841672d6abc548e5a2c6b56c054b85bd64684dc7bf145110c6eb51788d600a37bfcad60e8f4d8c982aa92213ee75ed95cc963 EBUILD augustus-3.4.0-r3.ebuild 1098 BLAKE2B f8fd13b91ffeb4f5c2bae0ce51473275ad61a9ad25c548ce4f564dfea6462dfd7c83be9fb6395908a8b226472d7f0e29430910552da2f70e0d6ece8258ac794e SHA512 94507d41aeb7a64f046f7c76f9feb86b95db082c34b099a9470d17200540997a58ef1b445083c2ba486bf3c6267ecf56f80c90174c099bc095c60cfa5ac98cf8 -EBUILD augustus-3.5.0.ebuild 1794 BLAKE2B f850df5e8d1b48323f26541350f6a23c09c916a2136c41a377ea3ea40a7aede9d28732b45cd2219eb8373ec74695495dafefbef52ca7e8c831d16b3bf3259c5c SHA512 9c6f7ca416a30dbf4424d539a8fdfbb78c2d8ac715955515079978d55457001e5cfd366c384dfdd7718f723fd87f693dd978c8abacb2212ae39df3c8feedd082 +EBUILD augustus-3.5.0.ebuild 1840 BLAKE2B 1a01a22fb375bcc89ec16ed5edb37a9f79886d8d033bcff7c8f24e475020d74f804c3817dca72c0698c910fb855db2f63e8e861c8b6f4dc62c82d19053e8747f SHA512 7c294154540c512ab13661e9dbcf50f09dc318ff9a8b3a52eb6e3ce8017968985c282efc7ead7450b47769afad36e5a293d7c98705df0ac0c786bc13e3dfa738 MISC metadata.xml 360 BLAKE2B a2a37a6ac8535c7c1e48711fe6f330bddc6057a445afb33bced10e3137255bbe647d85a1c300af4cc802c2fdaa4a6d4ee169e82778ba4437e60824daf2485633 SHA512 7f3cc43067ed98c6fee8302eff2855b3594c2adc3e81d72c27aa20bd9e4477401607a4424e93368a3e501bcb90a44106bebdffd2ca0069e94b3b5d3e5fc2156e diff --git a/sci-biology/augustus/augustus-3.5.0.ebuild b/sci-biology/augustus/augustus-3.5.0.ebuild index 01f8dbc42621..86b618fa12ca 100644 --- a/sci-biology/augustus/augustus-3.5.0.ebuild +++ b/sci-biology/augustus/augustus-3.5.0.ebuild @@ -44,6 +44,7 @@ BDEPEND=" PATCHES=( "${FILESDIR}"/augustus-3.4.0-missing-cstdint.patch + "${FILESDIR}"/augustus-3.5.0-fix-gcc15.patch ) pkg_setup() { diff --git a/sci-biology/augustus/files/augustus-3.5.0-fix-gcc15.patch b/sci-biology/augustus/files/augustus-3.5.0-fix-gcc15.patch new file mode 100644 index 000000000000..4c5916ad402f --- /dev/null +++ b/sci-biology/augustus/files/augustus-3.5.0-fix-gcc15.patch @@ -0,0 +1,20 @@ +https://bugs.gentoo.org/949617 +https://github.com/Gaius-Augustus/Augustus/pull/431 + +From b7cbe782e840c82da1eeb2aae7a1a757ecef9fb0 Mon Sep 17 00:00:00 2001 +From: Alfred Wingate <parona@protonmail.com> +Date: Tue, 11 Feb 2025 14:57:23 +0200 +Subject: [PATCH] filterBam: include missing header for gcc15 + +Bug: https://bugs.gentoo.org/949617 +Signed-off-by: Alfred Wingate <parona@protonmail.com> +--- a/auxprogs/filterBam/src/headers/bamaccess.hh ++++ b/auxprogs/filterBam/src/headers/bamaccess.hh +@@ -7,6 +7,7 @@ + #include <iostream> + #include <vector> + #include <memory> ++#include <cstdint> + + class BamAlignmentRecord; + typedef std::shared_ptr<BamAlignmentRecord> BamAlignmentRecord_; |