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authorV3n3RiX <venerix@koprulu.sector>2023-04-06 23:28:41 +0100
committerV3n3RiX <venerix@koprulu.sector>2023-04-06 23:28:41 +0100
commit91f19a3f41e80c4ab434a07636edb90912ef7556 (patch)
tree94510a6b3336b3129759452bf1811330e591c0c0 /sci-biology/bcftools
parent3d1ec36f5f52760f2431b79c71dd9b7aaefbc9ee (diff)
gentoo auto-resync : 06:04:2023 - 23:28:41
Diffstat (limited to 'sci-biology/bcftools')
-rw-r--r--sci-biology/bcftools/Manifest2
-rw-r--r--sci-biology/bcftools/bcftools-1.16.ebuild42
2 files changed, 0 insertions, 44 deletions
diff --git a/sci-biology/bcftools/Manifest b/sci-biology/bcftools/Manifest
index 5e78fe941f36..e67ac75194fe 100644
--- a/sci-biology/bcftools/Manifest
+++ b/sci-biology/bcftools/Manifest
@@ -1,5 +1,3 @@
-DIST bcftools-1.16.tar.bz2 7325862 BLAKE2B 0e1240448d4efb352d3d0cd83decd286f7544fff3676f0a5cca51dec9c445c47c37ac24a3317aa7b41182c576e7e57dba460fc98aca069dc2f8fe0625c0b0f06 SHA512 998d5ac941f73798c35dd1db7ac7aba9067f275bd3055728aabfd8edd9f40484130df1fb57621d1a762a57b28ffcac358570915c341d420ae6f12bd17f7651a3
DIST bcftools-1.17.tar.bz2 7538043 BLAKE2B 82f65d53ebea0527ff000329f158ebdb1d603e04841a096cf8ca0434e7a5694ab43da7959ee10e9cb29328bf82301c03200e1203578a74e2e1118856b2641502 SHA512 39ae44a682e626a5261900e9412170a269e460b559d6607db697e6a12b1e512ffb3bdeb3486413e19b8adca26a8ccbb2bd4af24459decb74592c54473d2c6a68
-EBUILD bcftools-1.16.ebuild 900 BLAKE2B 98f04325ca039867010c25c5ebff64725de637960c1980cce0faee7b8514d187ca3a309a3db79bb809ebcb9938869884c89b54f232fcf826aa34b38c5dde9c6e SHA512 82bb9a379019f0d9f9c601fad06d4041e5b890cb21618cc37f37f5f6ce0c3d5d9cd1d6223a19b8a53303e8ab3ce4046a21fbd3b7b18fd45243d57226d040ffc4
EBUILD bcftools-1.17.ebuild 900 BLAKE2B 98f04325ca039867010c25c5ebff64725de637960c1980cce0faee7b8514d187ca3a309a3db79bb809ebcb9938869884c89b54f232fcf826aa34b38c5dde9c6e SHA512 82bb9a379019f0d9f9c601fad06d4041e5b890cb21618cc37f37f5f6ce0c3d5d9cd1d6223a19b8a53303e8ab3ce4046a21fbd3b7b18fd45243d57226d040ffc4
MISC metadata.xml 344 BLAKE2B 37f8e82e8a5a9ad572580a7e5ae6daa6911d672f17b8526f81b236cbc2e50a32c4cd2566aaed9f5feee016d7e2de7db2a40b60616e86c3e8cae307d60cebc70e SHA512 0160c9606089d610613d71dc0aa9c9c5e5266483fdc9c407b6e0ed911eac8f8b32ffaf5a49bbb427393c8240e9868df51f0fc68b2f45467f65d9b3d54b0ddde1
diff --git a/sci-biology/bcftools/bcftools-1.16.ebuild b/sci-biology/bcftools/bcftools-1.16.ebuild
deleted file mode 100644
index 6adee705bb46..000000000000
--- a/sci-biology/bcftools/bcftools-1.16.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{9..11} )
-
-inherit python-single-r1
-
-DESCRIPTION="Utilities for variant calling and manipulating VCF and BCF files"
-HOMEPAGE="http://www.htslib.org"
-SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- dev-lang/perl
- $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]')
- =sci-libs/htslib-$(ver_cut 1-2)*:=
- sys-libs/zlib
- ${PYTHON_DEPS}"
-DEPEND="${RDEPEND}"
-BDEPEND="${PYTHON_DEPS}"
-
-src_prepare() {
- default
-
- python_fix_shebang misc/{gff2gff,guess-ploidy,plot-roh}.py
-
- # remove bundled htslib
- rm -r htslib-* || die
-}
-
-src_configure() {
- econf \
- --disable-bcftools-plugins \
- --disable-libgsl \
- --with-htslib=system
-}