gentoo resync : 30.09.2020

1 files changed, 39 insertions, 0 deletions

diff --git a/sci-biology/bwa/bwa-0.7.17.ebuild b/sci-biology/bwa/bwa-0.7.17.ebuild
new file mode 100644
index 000000000000..3da06fd74f92
--- /dev/null
+++ b/sci-biology/bwa/bwa-0.7.17.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit toolchain-funcs
+
+DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
+HOMEPAGE="https://github.com/lh3/bwa/"
+SRC_URI="https://github.com/lh3/bwa/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~x64-macos"
+
+DEPEND="sys-libs/zlib"
+RDEPEND="
+	${DEPEND}
+	dev-lang/perl"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-0.7.17-Makefile.patch
+	"${FILESDIR}"/${PN}-0.7.17-gcc-10.patch
+)
+DOCS=( NEWS.md README-alt.md README.md )
+
+src_configure() {
+	tc-export CC AR
+}
+
+src_install() {
+	dobin bwa
+
+	exeinto /usr/libexec/${PN}
+	doexe qualfa2fq.pl xa2multi.pl
+
+	einstalldocs
+	doman bwa.1
+}