diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
| commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
| tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-biology/diya | |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-biology/diya')
| -rw-r--r-- | sci-biology/diya/Manifest | 5 | ||||
| -rw-r--r-- | sci-biology/diya/diya-1.0_rc4.ebuild | 42 | ||||
| -rw-r--r-- | sci-biology/diya/metadata.xml | 11 |
3 files changed, 58 insertions, 0 deletions
diff --git a/sci-biology/diya/Manifest b/sci-biology/diya/Manifest new file mode 100644 index 000000000000..db33b6914d41 --- /dev/null +++ b/sci-biology/diya/Manifest @@ -0,0 +1,5 @@ +DIST diya-1.0-rc4.tar.gz 386706 SHA256 13f7dd4dd7f96143948587884954e337552d7491347c2c174e786824880590c7 SHA512 64a00cb7f07200882d0b97f58e6b7f26d08ab0eab43834c3d19ab08f61080f8edb4a63833095e876c72c087324d39b2c4334ed1d3aa0280b7efb6a7ab3e08007 WHIRLPOOL 3efaf61a7e4129f1d3766b768dbe188df1c41d3158f431280022f17a8899db63b4db9a9774e48b49807e211ce58f28d588ebbd3037c8af5967b72e8e18539ffa +EBUILD diya-1.0_rc4.ebuild 1217 SHA256 f28d4d1ba5ba5ac39499d7f80bf0caeb62b523a9ef08032518b8aaf96f7ef67e SHA512 b375b2561d04f7c74db215f5dc61d7f3dba395e2bc025b392c2d5201938a8f49481698a1d863d9b3f4a8094e6a2244afed21e088f2893f7dc2d51df88cb2c8ca WHIRLPOOL 40c2719cab47ee3a849d5abe5a268c85ab13b4170664d9680d3994c0dbf3d4fd30d290f80e06f28e696b538e99436cf88308b6b240b6d09f6225c288915f4530 +MISC ChangeLog 2425 SHA256 8b54243c2df9c3362f08b5782d3da481b5f90053929e3295bfc16b622820cfdb SHA512 563be1d116756c7d8045d74c2b0a7735b49fb99d59506a9e3f54fe726184a038da459a217e21070a2bd5bf9a1f1aff837aeafa64c71dba1c2d7f7607dbc1c287 WHIRLPOOL 8ab829049ada06b71e72a8235f6710c723fd95e607dd6e6210809de7a1406943926240920c1c37cbe692726f1731064ba862e4dbd021f943520cf2106ac811b8 +MISC ChangeLog-2015 589 SHA256 4a47d8a2e72f6a813afd872cccb1d18759a877121aadd30a2cee1fc3862cbb25 SHA512 4e8e6dff796f223c9413bac3af000aa10661534027bf0b9f138c0639753b5fb6a44f7caf9765b7129956953f0a7fcbe6d9ef313d5d8bc42bc51b692706cc4f94 WHIRLPOOL 84f18afb0e09994b8ed8bb7412be0c266cdd54037b58bdd54c13cd0a14b33fe1ae33b695c5622ed00e0008b7f7b04ef2f60583692381c904dde6fcf6c2fc648f +MISC metadata.xml 345 SHA256 b42d0688d640c57997ac54e7036a98160c0a6b97d319288384bf516af91d0a3a SHA512 e7ea850a7f00eddfaeca18fa71baafd495191919211aa4d5a2439e48e57a09a1e383b27b1f1bccd8b2533bc5028bd1ead4ab763a514ed6dda96ca3ff625d2657 WHIRLPOOL 4cfe990e8c4ce350aa5fa1c03b8b43f8631af7283c263c0f0ea413fb8015ab1a43e9cb481d039c0a09fa33d6a3d06a3c40ac22f73256e5f932d27e2e91c15f71 diff --git a/sci-biology/diya/diya-1.0_rc4.ebuild b/sci-biology/diya/diya-1.0_rc4.ebuild new file mode 100644 index 000000000000..ae923b60da8d --- /dev/null +++ b/sci-biology/diya/diya-1.0_rc4.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI="5" + +inherit perl-module + +DESCRIPTION="Do It Yourself Annotation, tools & libraries for sequence assembly & annotation" +HOMEPAGE="http://gmod.org/wiki/Diya" +SRC_URI="mirror://sourceforge/diyg/files/diya/diya-1.0/diya-${PV/_/-}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +IUSE="-minimal" +KEYWORDS="~amd64 ~x86" + +DEPEND="sci-biology/bioperl + dev-perl/Data-Utilities + dev-perl/XML-Simple" +RDEPEND="${DEPEND} + !minimal? ( + sci-biology/mummer + sci-biology/glimmer + sci-biology/trnascan-se + sci-biology/infernal )" + +# see ftp://ftp.ncbi.nih.gov/blast/ to check if blast and blast+ are different from ncbi-tools and ncbi-tools++ +# * rfamscan.pl v0.1 (http://www.sanger.ac.uk/Users/sgj/code/) +# * UniRef50 (http://www.ebi.ac.uk/uniref/) +# * Protein Clusters (ftp://ftp.ncbi.nih.gov/genomes/Bacteria/CLUSTERS/) +# The file cddid_all.tbl can be found at ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/. + +S="${WORKDIR}/diya-${PV/_/-}" + +SRC_TEST=do + +src_install() { + mydoc="INSTALL README docs/diya.html" + perl-module_src_install + insinto /usr/share/${PN} + doins -r diya.conf docs examples scripts +} diff --git a/sci-biology/diya/metadata.xml b/sci-biology/diya/metadata.xml new file mode 100644 index 000000000000..37bde911b940 --- /dev/null +++ b/sci-biology/diya/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="sourceforge">diyg</remote-id> + </upstream> +</pkgmetadata> |