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authorV3n3RiX <venerix@redcorelinux.org>2021-05-07 01:33:16 +0100
committerV3n3RiX <venerix@redcorelinux.org>2021-05-07 01:33:16 +0100
commitc8fd0d84af0bfd1949542adc2cbb735b1d28f9ed (patch)
tree3ee550255947da075650f1a551dcc278f9a1b7f8 /sci-biology/diya
parenta978c074e4272bb901fbe4a10de0a7b2af574f17 (diff)
gentoo resync : 07.05.2021
Diffstat (limited to 'sci-biology/diya')
-rw-r--r--sci-biology/diya/Manifest3
-rw-r--r--sci-biology/diya/diya-1.0_rc4.ebuild42
-rw-r--r--sci-biology/diya/metadata.xml11
3 files changed, 0 insertions, 56 deletions
diff --git a/sci-biology/diya/Manifest b/sci-biology/diya/Manifest
deleted file mode 100644
index 4ad379641896..000000000000
--- a/sci-biology/diya/Manifest
+++ /dev/null
@@ -1,3 +0,0 @@
-DIST diya-1.0-rc4.tar.gz 386706 BLAKE2B 9d000892c3da9ec307a8e089056611bc9cd566ac2dea046601506215c1a5c5fb67621324d2d9e1de94ee4e00129325448e3a1a8aa417e5d8c07f564a77e287d6 SHA512 64a00cb7f07200882d0b97f58e6b7f26d08ab0eab43834c3d19ab08f61080f8edb4a63833095e876c72c087324d39b2c4334ed1d3aa0280b7efb6a7ab3e08007
-EBUILD diya-1.0_rc4.ebuild 1217 BLAKE2B 014c091e406c0bf0b9a6544abdada049fd29914e72645cbeea820ee152d1eb5edf4137d35e79fd70e0e1ffdb542af78999a80138ec12b49a687764d25aa3a137 SHA512 b375b2561d04f7c74db215f5dc61d7f3dba395e2bc025b392c2d5201938a8f49481698a1d863d9b3f4a8094e6a2244afed21e088f2893f7dc2d51df88cb2c8ca
-MISC metadata.xml 345 BLAKE2B 3f4217699268536e4a5ca038d3fda29296606f96b3bccdfce05fbde987c98f572603555bab4036274dd6a76745692db7f669a36764a80cd2ee1d851ee5221970 SHA512 e7ea850a7f00eddfaeca18fa71baafd495191919211aa4d5a2439e48e57a09a1e383b27b1f1bccd8b2533bc5028bd1ead4ab763a514ed6dda96ca3ff625d2657
diff --git a/sci-biology/diya/diya-1.0_rc4.ebuild b/sci-biology/diya/diya-1.0_rc4.ebuild
deleted file mode 100644
index ae923b60da8d..000000000000
--- a/sci-biology/diya/diya-1.0_rc4.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="5"
-
-inherit perl-module
-
-DESCRIPTION="Do It Yourself Annotation, tools & libraries for sequence assembly & annotation"
-HOMEPAGE="http://gmod.org/wiki/Diya"
-SRC_URI="mirror://sourceforge/diyg/files/diya/diya-1.0/diya-${PV/_/-}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE="-minimal"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="sci-biology/bioperl
- dev-perl/Data-Utilities
- dev-perl/XML-Simple"
-RDEPEND="${DEPEND}
- !minimal? (
- sci-biology/mummer
- sci-biology/glimmer
- sci-biology/trnascan-se
- sci-biology/infernal )"
-
-# see ftp://ftp.ncbi.nih.gov/blast/ to check if blast and blast+ are different from ncbi-tools and ncbi-tools++
-# * rfamscan.pl v0.1 (http://www.sanger.ac.uk/Users/sgj/code/)
-# * UniRef50 (http://www.ebi.ac.uk/uniref/)
-# * Protein Clusters (ftp://ftp.ncbi.nih.gov/genomes/Bacteria/CLUSTERS/)
-# The file cddid_all.tbl can be found at ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/.
-
-S="${WORKDIR}/diya-${PV/_/-}"
-
-SRC_TEST=do
-
-src_install() {
- mydoc="INSTALL README docs/diya.html"
- perl-module_src_install
- insinto /usr/share/${PN}
- doins -r diya.conf docs examples scripts
-}
diff --git a/sci-biology/diya/metadata.xml b/sci-biology/diya/metadata.xml
deleted file mode 100644
index 37bde911b940..000000000000
--- a/sci-biology/diya/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">diyg</remote-id>
- </upstream>
-</pkgmetadata>