gentoo resync : 25.11.2020

2 files changed, 24 insertions, 23 deletions

diff --git a/sci-biology/embassy-emnu/Manifest b/sci-biology/embassy-emnu/Manifest
index fd37224607b6..abf651b02922 100644
--- a/sci-biology/embassy-emnu/Manifest
+++ b/sci-biology/embassy-emnu/Manifest
@@ -1,4 +1,4 @@
-AUX embassy-emnu-1.05.650_fix-build-system.patch 4072 BLAKE2B d256a82e214b8900eaab252e6695c4120eabb8379a59cfffe6a8b70e5decaf681af42ed9de3f9f74215a1a7f21e11367763aa705d7495eca41ab3fea1483e056 SHA512 644c4f0930a157ae9121354b49ddeb756b25d823d25733405fcc500d2080067f013443ba43a1512c6940fc4fd19cfe38c336dd0c58237354bad580cf9ba68b2e
+AUX embassy-emnu-1.05.650_fix-build-system.patch 3844 BLAKE2B b77be3d3917db4cdfcfce201089595a80b970575f77dffbc366c77ae27010b9a78582b035728008b20ae11b0c7c18b7b20a5fdfcd59b840f85f54a1db2fc5496 SHA512 1836ba79762f62f9e27a770a35b89ae5f2821c4d23dc93b1ab3505404105280256f1c43287471385a5be71659fbe614f5f7f97d78a4743b3b1b90b303a25f674
 DIST embassy-emnu-1.05.660.tar.gz 425595 BLAKE2B ed6ab4a0572ac4b57cf0f0b75a3894b1f950f7f373a7c6797ea0c34ba1b0d0e044f2c6951aec7c084340c6b207aa4c8b386055e92ceb9fc83c920fc70e83e665 SHA512 0cb0dafd53c4fd410409430dc12353989d2c226191acace26e81b457602b6b6c60f8eb1d0d9b36ea90b2420010c1a3e887a2458e8487008a36775961e378d0dd
 EBUILD embassy-emnu-1.05.660.ebuild 470 BLAKE2B 4a5fb352f30c729ded48ba438d978ff7ba85ee419eb1dbe94df07f34dd2b6fa50527615678c166cd627090bb2b15bd88d6d8ffd3d66e16006714d9a175444dec SHA512 ec9df242ed5a421fdbc45b59c1a9a9a3cfe540bde2ea010a29ac56e758d26fa0f1a1c850de644e82486a574850b0702d7d87adebfd851cd40076e17596c88f05
 MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e
diff --git a/sci-biology/embassy-emnu/files/embassy-emnu-1.05.650_fix-build-system.patch b/sci-biology/embassy-emnu/files/embassy-emnu-1.05.650_fix-build-system.patch
index 4e14bac1704a..ecd7f928da3a 100644
--- a/sci-biology/embassy-emnu/files/embassy-emnu-1.05.650_fix-build-system.patch
+++ b/sci-biology/embassy-emnu/files/embassy-emnu-1.05.650_fix-build-system.patch
@@ -1,13 +1,6 @@
- configure.ac           | 67 +++++++++++---------------------------------------
- emboss_acd/Makefile.am |  2 +-
- src/Makefile.am        |  7 +++---
- 3 files changed, 18 insertions(+), 58 deletions(-)
-
-diff --git a/configure.ac b/configure.ac
-index 7482ade..b815bdb 100644
 --- a/configure.ac
 +++ b/configure.ac
-@@ -635,33 +635,6 @@ AS_CASE([${host_os}],
+@@ -635,33 +635,6 @@
  
  
  
@@ -41,7 +34,7 @@ index 7482ade..b815bdb 100644
  dnl FIXME: This does no longer seem required with Autoconf 2.67?
  dnl Intel MacOSX 10.6 puts X11 in a non-standard place
  dnl AS_IF([test "x${with_x}" != "xno"],
-@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL
+@@ -737,21 +710,6 @@
  
  
  
@@ -63,7 +56,7 @@ index 7482ade..b815bdb 100644
  dnl Test if --enable-localforce given
  locallink="no"
  embprefix="/usr/local"
-@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs],
+@@ -874,6 +832,13 @@
  AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
  
  
@@ -77,23 +70,24 @@ index 7482ade..b815bdb 100644
  
  
  # Enable the purify tool: --enable-purify, sets CC and LIBTOOL
-@@ -899,20 +864,16 @@ dnl fi
+@@ -899,20 +864,16 @@
  
  
  dnl emnu and mse only: uses curses
 -dnl Test if --with-curses is given
 -AC_ARG_WITH([curses],
 -[AS_HELP_STRING([--with-curses], [curses (or ncurses)])])
-+dnl Test if --enable-curses is given
-+AC_ARG_ENABLE([curses],
-+[AS_HELP_STRING([--enable-curses], [curses])])
- 
+-
 -AC_MSG_CHECKING([for curses])
 -
 -AS_IF([test "${with_curses}"],
 -[
 -  CPPFLAGS="$CPPFLAGS -I${with_curses}/include -I${with_curses}/include/ncurses"
 -  LDFLAGS="$LDFLAGS -L${with_curses}/lib"
++dnl Test if --enable-curses is given
++AC_ARG_ENABLE([curses],
++[AS_HELP_STRING([--enable-curses], [curses])])
++
 +AS_IF([test "x$enable_curses" = "xyes"], [
 +  PKG_CHECK_MODULES([NCURSES], [ncurses])
 +  PKG_CHECK_MODULES([FORM], [form])
@@ -105,8 +99,6 @@ index 7482ade..b815bdb 100644
  
  
  
-diff --git a/emboss_acd/Makefile.am b/emboss_acd/Makefile.am
-index e1c1878..e253c95 100644
 --- a/emboss_acd/Makefile.am
 +++ b/emboss_acd/Makefile.am
 @@ -1,3 +1,3 @@
@@ -114,11 +106,9 @@ index e1c1878..e253c95 100644
 -pkgdata_DATA = *.acd
 +pkgdata_DATA = $(srcdir)/*.acd
  pkgdatadir=$(prefix)/share/EMBOSS/acd
-diff --git a/src/Makefile.am b/src/Makefile.am
-index b295079..330c76f 100644
 --- a/src/Makefile.am
 +++ b/src/Makefile.am
-@@ -17,9 +17,8 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \
+@@ -17,9 +17,8 @@
  	-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
  	-I../../../ajax/acd -I../../../plplot
  else
@@ -130,10 +120,21 @@ index b295079..330c76f 100644
  endif
  
  if ISSHARED
-@@ -57,5 +56,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
+@@ -34,7 +33,7 @@
+ -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre \
+  $(NLAIXLIBS) -leplplot
+ else
+-AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \
++AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -lnucleus -lacd \
+ -lajaxdb -lensembl -lajaxg -lajax -lepcre $(NLAIXLIBS) -leplplot
+ endif
+ endif
+@@ -56,6 +55,6 @@
+ 	../../../ajax/pcre/libepcre.la \
  	../../../plplot/libeplplot.la -lmenu -lform $(XLIB)
  else
- LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
+-LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
 -        -lajax -lepcre $(NLADD) -leplplot -lmenu -lform $(XLIB)
++LDADD = -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
 +        -lajax $(NLADD) $(NCURSES_LIBS) $(FORM_LIBS) $(MENU_LIBS) $(XLIB)
  endif