diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-03-20 14:27:17 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-03-20 14:27:17 +0000 |
| commit | 5bb9ff1ee56d2b5e75e01a7f066d8b0cec84ec02 (patch) | |
| tree | 66e860a5099bcad013f1cf667255dc372a7c11b3 /sci-biology/embassy-hmmer | |
| parent | 7218e1b46bceac05841e90472501742d905fb3fc (diff) | |
gentoo resync : 20.03.2021
Diffstat (limited to 'sci-biology/embassy-hmmer')
3 files changed, 21 insertions, 18 deletions
diff --git a/sci-biology/embassy-hmmer/Manifest b/sci-biology/embassy-hmmer/Manifest index 9acbe42f919c..5d34609a139f 100644 --- a/sci-biology/embassy-hmmer/Manifest +++ b/sci-biology/embassy-hmmer/Manifest @@ -1,5 +1,5 @@ -AUX embassy-hmmer-2.3.2.650_fix-build-system.patch 2860 BLAKE2B cc3075caddedd8c50836b46943caaddecaedc517d93da7d9777f8c6dad97442f185f51e2c755173038c90dcb10097cc4b105ae812e54826552444d5b46374155 SHA512 f215e5c338aa1f0bf791de223f3ee9a13622f70e142c5ad4812dfe171f7d602aab750e1dfe4233324752adc645abf289e63d8981b8497787c785c07de64c7944 +AUX embassy-hmmer-2.3.2.650_fix-build-system.patch 2775 BLAKE2B 70ac87074b81a15a4f8641a9c98136b23ef8ad78c2ee17b3762a624366638023e147efaef478b1c79f5a5f1d09a882cb3fecb1eec4131307bc585b08855aae6b SHA512 b0ff185fecd52e5452d3257b2e5bd6f1268d84b491f529d66025534d9353f57ddecefa81a69ae3299ad687b1d3480964c4a1df609c2e77b0db1a511207ac49b6 AUX embassy-hmmer-2.3.2.660-slotted-hmmer2.patch 3392 BLAKE2B 56da7becf8da8195016cb98518a19fc34394d98400dca6bb499d43c57172ed76ec81d5a9216b4a1b5e67b33520431ce87ed1327db99f3f924a36d80ff8c9e0c3 SHA512 18d1595b7cd6091917f9657310b286d2f0d1f6a61c045840b1c551b66162142997b837cc50b47a3a5fa7efec4ffa78e5b9b52804e3c4d41efeed9b4edb6e5507 DIST embassy-hmmer-2.3.2.660.tar.gz 587775 BLAKE2B ae7f7c8722bb06d4e28333837b082045e48179a596026a76c2a42f7905c7ebc42f98dd4f36915e4603322bb6d976ac4fa4e8ce6246cdee025b39ecfcb250bd10 SHA512 eb2c037fec70f4113b9ab59cc4eca9a608e8d0971a7bcc4612d60b1e28556444dd3ecdea4ff7b8f8b34711ad9f655334857e7510e89060459c81994a3abcc02a -EBUILD embassy-hmmer-2.3.2.660.ebuild 501 BLAKE2B 3890181b25b9f6ca7793f05765f47723d6c040478af2f197f0ef9ebedd594d293224cf4878fd1e8a0850781252abc54537804116fcf625f38d35439e2cf8020d SHA512 bee21c5e7950f2f11be84c0287010630754681d840fc7393f9fc8e0c05fd14169e03f37a6d99bc4dfb28dae5b9f78a9f509a163cee6722796a3300b0cdab0651 +EBUILD embassy-hmmer-2.3.2.660.ebuild 498 BLAKE2B 7f319b02c38423cd0bcb6fa7f5833ec4c781c04ce52cf18db847406d5934ffb8957cb1a39e712fd3314bb78e08823b8442809c45b4c8b5d5e0c6e638451fadf7 SHA512 cff995afdb31de78ec2feb8e8b0fcc3f4e51f5214b3fd443c5b24a2f4a7dd3ac9e0a712f400734128bce52d7cc80b2fd71882716d7d1ed9007ccaa6a31710ee2 MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild index 4fa2defa1f7d..c22ff4141c2f 100644 --- a/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild +++ b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2.660.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 EBO_DESCRIPTION="HMMER wrapper - sequence analysis with profile HMMs" diff --git a/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch b/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch index 90c45632eada..303aacda46cd 100644 --- a/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch +++ b/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch @@ -1,12 +1,6 @@ - configure.ac | 49 +++++++------------------------------------------ - src/Makefile.am | 6 ++---- - 2 files changed, 9 insertions(+), 46 deletions(-) - -diff --git a/configure.ac b/configure.ac -index 037ca00..f539ab6 100644 --- a/configure.ac +++ b/configure.ac -@@ -635,33 +635,6 @@ AS_CASE([${host_os}], +@@ -635,33 +635,6 @@ @@ -40,7 +34,7 @@ index 037ca00..f539ab6 100644 dnl FIXME: This does no longer seem required with Autoconf 2.67? dnl Intel MacOSX 10.6 puts X11 in a non-standard place dnl AS_IF([test "x${with_x}" != "xno"], -@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL +@@ -737,21 +710,6 @@ @@ -62,7 +56,7 @@ index 037ca00..f539ab6 100644 dnl Test if --enable-localforce given locallink="no" embprefix="/usr/local" -@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs], +@@ -874,6 +832,13 @@ AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) @@ -76,11 +70,9 @@ index 037ca00..f539ab6 100644 # Enable the purify tool: --enable-purify, sets CC and LIBTOOL -diff --git a/src/Makefile.am b/src/Makefile.am -index dc789bc..5a8c38e 100644 --- a/src/Makefile.am +++ b/src/Makefile.am -@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \ +@@ -17,9 +17,7 @@ -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ -I../../../ajax/acd -I../../../plplot else @@ -91,10 +83,21 @@ index dc789bc..5a8c38e 100644 endif if ISSHARED -@@ -67,5 +65,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ +@@ -34,7 +32,7 @@ + -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre \ + $(NLAIXLIBS) -leplplot + else +-AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \ ++AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -lnucleus -lacd \ + -lajaxdb -lensembl -lajaxg -lajax -lepcre $(NLAIXLIBS) -leplplot + endif + endif +@@ -66,6 +64,6 @@ + ../../../plplot/libeplplot.la \ $(XLIB) else - LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ +-LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ - -lajax -lepcre $(NLADD) -leplplot $(XLIB) ++LDADD = -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ + -lajax $(NLADD) $(XLIB) endif |