diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
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committer | V3n3RiX <venerix@redcorelinux.org> | 2017-10-09 18:53:29 +0100 |
commit | 4f2d7949f03e1c198bc888f2d05f421d35c57e21 (patch) | |
tree | ba5f07bf3f9d22d82e54a462313f5d244036c768 /sci-biology/embassy-meme |
reinit the tree, so we can have metadata
Diffstat (limited to 'sci-biology/embassy-meme')
-rw-r--r-- | sci-biology/embassy-meme/Manifest | 6 | ||||
-rw-r--r-- | sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild | 17 | ||||
-rw-r--r-- | sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch | 100 | ||||
-rw-r--r-- | sci-biology/embassy-meme/metadata.xml | 11 |
4 files changed, 134 insertions, 0 deletions
diff --git a/sci-biology/embassy-meme/Manifest b/sci-biology/embassy-meme/Manifest new file mode 100644 index 000000000000..5021cd8b5caa --- /dev/null +++ b/sci-biology/embassy-meme/Manifest @@ -0,0 +1,6 @@ +AUX embassy-meme-4.7.650_fix-build-system.patch 2860 SHA256 928eb90afbc7b70f69fd4bb7f1090bbd4ea2bd3d7a286b56c947dd481156b5b6 SHA512 c44b219c75e67d17fcfd56145ae3709053bda38b8690141d1e9b846e4e4a9cab135f0dc9c5399e4712cf030ad562dd075f45c393e78157a2c1b92d80903b3d1c WHIRLPOOL 4e93c672ee6026ee7b2e2ff6c8771a375049629f5e24e2e6cf9afa72cced5fc62d21f49c161fb5ffe55f0637ffe14baf78df15c1c95e0a42d3495a1619365141 +DIST embassy-meme-4.7.660.tar.gz 622448 SHA256 a9ce0af5f8e05d82cf7678c9781041520bb9889a5706e38480940003ef2a9e8f SHA512 0536531b198aac09a9fe6c17cf1c60c766789c94a7f83f743a90aaa65061c95534bf398c53611a34549b7ec1a4928fdc45fe0d2553f25f85eeda41f90c2e8c6f WHIRLPOOL 041fec3789c86375edb64b34a0190484cda6a59aab564c5deee19930a8cec0455ed9689d726cb647cca30e7c3c59f728aff5546ab8ad491aed4f331e76497b51 +EBUILD embassy-meme-4.7.660.ebuild 381 SHA256 a89b8707e8bb0bf2f7d291d9223c97553b15ee50dd8cde2932bbcab0afface8b SHA512 b31045a88106d64ddbdd91cb85d06328b99b57eb490aa9f74f9cbf2464e3ed6485ca5e54ebd8146df8aacf0d44ee8f6f1d68cbb7a9e9dd3f2f46d637e2a8404b WHIRLPOOL dc87425fad3902502e290f228885500a6cba050a235a54f4831d138609a3d3c72fdd65e26e7b830bed4e146fbfc0317a5ace53f448f3c7718133fd0fae4a487f +MISC ChangeLog 3427 SHA256 bda42da0f155e2b202a1ac73eb0c3201d0721f1bb00ea253971ef2bf3fc2a4b3 SHA512 04340e39cd3f9676a9cac7b9137a1b62b83dfd1f9e5dc6cbfc01a5dde8d061c05ae242151b60364b5639254a6a4fd8b689ca822dd2659d9927600caaaa049b42 WHIRLPOOL db9cf3c9002291ec6679c0c9a2e05dba1ac5f883faecb4380b673874723bdb6e34f0c608db65a62cb0a1ad6fa460c9cf2dadd2f79ca2f765acceb95a224178f7 +MISC ChangeLog-2015 750 SHA256 dd4f3a12304e509ea4abd9caa5a5e1b68b2bc1df56b9c3cd26233de0531fea4a SHA512 0b079723cd9c0a825cae54d654e4ccc7f051242ec7eb399de0265e2ce43960b57d7854825535a2300a0b96ac70d735b6d23fe086a13192108b14addd4f3605c0 WHIRLPOOL af77519eb83320b982ed520d1d2b7a81edf88d4971a731c8964bca1080c2c4a9b4202a1f16addd68bca4893699a08b4419bc504fb34a4e0552d809646f272bd9 +MISC metadata.xml 347 SHA256 52f98c83739517e0c387d292abce08592cc91f49f0ca6961830adce541004cb2 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e WHIRLPOOL 1e331531e26a30418ce16d219ba8f2869d88279d42b5a2808e371276f18a56bcdd6b044f01f2a2c8489f1976293095f3a4c14e6c6672e7e7534438e4993b144b diff --git a/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild b/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild new file mode 100644 index 000000000000..8752e78d8fc9 --- /dev/null +++ b/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild @@ -0,0 +1,17 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +EBO_DESCRIPTION="MEME - Multiple Em for Motif Elicitation" + +EBO_EAUTORECONF=1 + +inherit emboss-r2 + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +RDEPEND="sci-biology/meme" + +S="${WORKDIR}/MEME-4.7.650" +PATCHES=( "${FILESDIR}"/${PN}-4.7.650_fix-build-system.patch ) diff --git a/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch b/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch new file mode 100644 index 000000000000..56f5814e1efa --- /dev/null +++ b/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch @@ -0,0 +1,100 @@ + configure.ac | 49 +++++++------------------------------------------ + src/Makefile.am | 6 ++---- + 2 files changed, 9 insertions(+), 46 deletions(-) + +diff --git a/configure.ac b/configure.ac +index 391989f..d921f25 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -635,33 +635,6 @@ AS_CASE([${host_os}], + + + +-dnl PCRE library definitions - see the MAJOR and MINOR values +-dnl to see which version's configure.in these lines come from +- +-dnl Provide the current PCRE version information. Do not use numbers +-dnl with leading zeros for the minor version, as they end up in a C +-dnl macro, and may be treated as octal constants. Stick to single +-dnl digits for minor numbers less than 10. There are unlikely to be +-dnl that many releases anyway. +- +-PCRE_MAJOR="7" +-PCRE_MINOR="9" +-PCRE_DATE="11-Apr-2009" +-PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}" +- +-dnl Default values for miscellaneous macros +- +-POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10" +- +-dnl Provide versioning information for libtool shared libraries that +-dnl are built by default on Unix systems. +- +-PCRE_LIB_VERSION="0:1:0" +-PCRE_POSIXLIB_VERSION="0:0:0" +- +- +- +- + dnl FIXME: This does no longer seem required with Autoconf 2.67? + dnl Intel MacOSX 10.6 puts X11 in a non-standard place + dnl AS_IF([test "x${with_x}" != "xno"], +@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL + + + +-dnl "Export" these variables for PCRE +- +-AC_SUBST([HAVE_MEMMOVE]) +-AC_SUBST([HAVE_STRERROR]) +-AC_SUBST([PCRE_MAJOR]) +-AC_SUBST([PCRE_MINOR]) +-AC_SUBST([PCRE_DATE]) +-AC_SUBST([PCRE_VERSION]) +-AC_SUBST([PCRE_LIB_VERSION]) +-AC_SUBST([PCRE_POSIXLIB_VERSION]) +-AC_SUBST([POSIX_MALLOC_THRESHOLD]) +- +- +- +- + dnl Test if --enable-localforce given + locallink="no" + embprefix="/usr/local" +@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs], + AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) + + ++AS_IF([test "x${enable_systemlibs}" = "xyes"], ++[ ++dnl using system libraries ++ PKG_CHECK_MODULES([PLPLOT], [plplotd], ++ [],[PKG_CHECK_MODULES([PLPLOT], [plplot])] ++ ) ++]) + + + # Enable the purify tool: --enable-purify, sets CC and LIBTOOL +diff --git a/src/Makefile.am b/src/Makefile.am +index 1600399..9f28162 100644 +--- a/src/Makefile.am ++++ b/src/Makefile.am +@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \ + -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ + -I../../../ajax/acd -I../../../plplot + else +-AM_CPPFLAGS = -I${embprefix}/include -I${embprefix}/include/eplplot \ +- $(NLINCLUDES) \ +- -I${embprefix}/include/epcre ++AM_CPPFLAGS = -I${embprefix}/include $(NLINCLUDES) $(PLPLOT_CFLAGS) + endif + + if ISSHARED +@@ -60,5 +58,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ + $(XLIB) + else + LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ +- -lajax -lepcre $(NLADD) -leplplot $(XLIB) ++ -lajax $(NLADD) $(XLIB) + endif diff --git a/sci-biology/embassy-meme/metadata.xml b/sci-biology/embassy-meme/metadata.xml new file mode 100644 index 000000000000..d1b9a7602ec2 --- /dev/null +++ b/sci-biology/embassy-meme/metadata.xml @@ -0,0 +1,11 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> + <upstream> + <remote-id type="sourceforge">emboss</remote-id> + </upstream> +</pkgmetadata> |