diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-03-12 21:55:15 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-03-12 21:55:15 +0000 |
| commit | 7218e1b46bceac05841e90472501742d905fb3fc (patch) | |
| tree | 56fae051db521b8fce8014cbc8b11484885b14b3 /sci-biology/emboss | |
| parent | 6d691ad5b6239929063441bbd14c489e92e7396e (diff) | |
gentoo resync : 12.03.2021
Diffstat (limited to 'sci-biology/emboss')
| -rw-r--r-- | sci-biology/emboss/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/emboss/emboss-6.6.0-r1.ebuild | 17 |
2 files changed, 9 insertions, 10 deletions
diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest index acc4eca43239..d3d3d46bb05a 100644 --- a/sci-biology/emboss/Manifest +++ b/sci-biology/emboss/Manifest @@ -4,5 +4,5 @@ AUX emboss-6.6.0_fix-build-system.patch 12599 BLAKE2B dbe6a94a801b0f46df0e7490c7 AUX emboss-6.6.0_plplot-declarations.patch 1562 BLAKE2B f6c19e6cb7c2eb8110a3841ed566d81411e75a6898cdfbb8ce4754a69291f78a069a44fbc5027430611ee83ca5a7abe1e536a59bedd01e30227c5762622614bd SHA512 fc27b7c1d518b5cdacf1964d56219c6574f43d18dc324e41b9dcdfd1afef17a784f2b209b62c366fb902ba57a50f438a1b328eb2118ee9463ce82b36039bc0bb AUX emboss-6.6.0_qa-implicit-declarations.patch 1324 BLAKE2B 42da02b30fa201e24091df762386a88ad76709d192dab95c82cf578126ef9973ba1e927711ac5dd3eee1cfac22a2d29fc75045ce72322cbd7faaa6d50564319e SHA512 15c303fe48a438f50f1c9a0efd7e8fcbcb4102151fc182feb8e0d74c47c3435385a1e44436cebd3c2017c97dd89b82832258748f28f3740e511a92b088f539fb DIST EMBOSS-6.6.0.tar.gz 117962028 BLAKE2B 91bf3c680290bd975d2ddb5251089d7f75f8a44a26e1247e93d2c9cf2f23e6b89c4218022ba1af0c940136ff56782f40d2c4604dc756b400ae23f223da7f3cca SHA512 2d28a03381f7dc98d205aa50202fbbac02ad218fc775d86579d310296be124403623484b1907154d915f15cd32a9f8cf16ecfaa6c4a28b362e24dc8e6380b75a -EBUILD emboss-6.6.0-r1.ebuild 1648 BLAKE2B 0cc2a8c446fbdb13cf5426e1a12b2585d6cd779059a1237e8aa2936e395b608c88eb02d0a591cf708344691a8d83f70e19c046c4f979897913c5abb40b7dba26 SHA512 3ff85cc699f9ccfaf68d8335b8631a7f976ad69e82a8bd0be70123fb61ab90c50250691c1e507b2ba891a07b5e6693612209d44780afe35ceef4e2c431f9d265 +EBUILD emboss-6.6.0-r1.ebuild 1631 BLAKE2B 561dcc9b1dcf2cfe71e6c42e1770d8dfee2a25df7bb86da22d9fe934a118f974f2294f444c0047cd28794d9f94356a201a050c878c2185df20e0a7bea59d819c SHA512 27c4c445c27c3915fac4b35e997ae549c86669b8998c5086af7b533fc69366e118dbb4a8f833e79bd4b8f783af7e2424e398f4b898b002725c42780e24b66bf8 MISC metadata.xml 1096 BLAKE2B 704b6e7e0e9cb07a4cb184813ede8d7410d6612b2c8626838383a383dbd44f85b7f1dbcc988634f22d06ad76fbac927b4fd8a8836191be702c4f99a26343c6ac SHA512 4964b7e46d9fc16fcc44aaf83d0bb21a5ae860300764ca50e25f51ee0affc55fd863027747eb8e0eeca3578eefecbe23cba5ce68d518960e1721047cbefa9a3d diff --git a/sci-biology/emboss/emboss-6.6.0-r1.ebuild b/sci-biology/emboss/emboss-6.6.0-r1.ebuild index 2aa5aa9bc5c9..1c74ded5e22f 100644 --- a/sci-biology/emboss/emboss-6.6.0-r1.ebuild +++ b/sci-biology/emboss/emboss-6.6.0-r1.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 EBO_EAUTORECONF=1 @@ -9,10 +9,11 @@ inherit emboss-r2 readme.gentoo-r1 DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package" SRC_URI="ftp://emboss.open-bio.org/pub/${PN^^}/${P^^}.tar.gz" +S="${WORKDIR}/${P^^}" +LICENSE+=" Apache-2.0 GPL-3+ CC-BY-3.0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="minimal" -LICENSE+=" Apache-2.0 GPL-3+ CC-BY-3.0" RDEPEND=" !games-action/xbomber @@ -27,8 +28,6 @@ PDEPEND=" sci-biology/rebase )" -S="${WORKDIR}/${P^^}" - PATCHES=( "${FILESDIR}"/${P}_fix-build-system.patch "${FILESDIR}"/${P}_FORTIFY_SOURCE-fix.patch @@ -42,20 +41,20 @@ src_install() { readme.gentoo_create_doc # Install env file for setting libplplot and acd files path. - cat > 22emboss <<- EOF || die + newenvd - 22emboss <<- EOF || die # ACD files location EMBOSS_ACDROOT="${EPREFIX}/usr/share/EMBOSS/acd" EMBOSS_DATA="${EPREFIX}/usr/share/EMBOSS/data" EOF - doenvd 22emboss # Remove useless dummy files - find "${ED%/}"/usr/share/EMBOSS -name dummyfile -delete || die "Failed to remove dummy files" + find "${ED}"/usr/share/EMBOSS -name dummyfile -delete \ + || die "Failed to remove dummy files" # Move the provided codon files to a different directory. This will avoid # user confusion and file collisions on case-insensitive file systems (see # bug #115446). This change is documented in "README.gentoo". - mv "${ED%/}"/usr/share/EMBOSS/data/CODONS{,.orig} \ + mv "${ED}"/usr/share/EMBOSS/data/CODONS{,.orig} \ || die "Failed to move CODON directory" } |