diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2022-10-23 21:50:52 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2022-10-23 21:50:52 +0100 |
| commit | ba3d6ddada23eaa04f85228bee3438ab479b4442 (patch) | |
| tree | 87c61faa67018943d552f24d91f0aeaece2b771e /sci-biology/eugene | |
| parent | 2e6d363c5e87569efc23848513e71f2233b7e9d9 (diff) | |
gentoo auto-resync : 23:10:2022 - 21:50:51
Diffstat (limited to 'sci-biology/eugene')
| -rw-r--r-- | sci-biology/eugene/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/eugene/eugene-4.1d-r1.ebuild | 1 | ||||
| -rw-r--r-- | sci-biology/eugene/files/eugene-4.1d-clang16.patch | 22 |
3 files changed, 25 insertions, 1 deletions
diff --git a/sci-biology/eugene/Manifest b/sci-biology/eugene/Manifest index 78dd82270c34..21120d84e544 100644 --- a/sci-biology/eugene/Manifest +++ b/sci-biology/eugene/Manifest @@ -2,8 +2,9 @@ AUX eugene-3.6-overflow.patch 252 BLAKE2B 83b82992d734996b2878028329642ec015a53f AUX eugene-3.6-plugins.patch 1843 BLAKE2B 8bf8f09a43ec35838058094188973f985f69992e7f273b5c40f71abf39b498ec9bad1f8c8db9f0b1f5ec77796abefbf150afa9dc3a6764d33d16c3bdc175f87d SHA512 66d9191656821ec958804462aec83885560dfa35f075e1b012401d9ee4b86368b83005353d0093af0b95dc313b1fee6995f981504737242820125c5ead20ae9c AUX eugene-4.1-format-security.patch 609 BLAKE2B 1571c5c3af87e5ea49fa1f5b5ce19487c1493aa85e8f7782645874abf62c9e5d09e2e8c4c6aa2c5f44aedba257859d0245fcbbd28ae57d24dae118c562561a3a SHA512 f4eedd5b70309d4b8eedce8f3a4f79b65e595d407e88fd79e7f4f2f8c98880432366124b7f0a34c9032c9a498a1db607b0cac20304e84ec01f736589924ff362 AUX eugene-4.1d-Wformat.patch 2719 BLAKE2B 6dbdcb4e9946d0245eeeca1ff23b5d52ff3b37a64cbd88838229836323959325c7f54c9b00dec0abc02c218c4761ddef00def7f111c41df628af6d06f2147a6e SHA512 b235c11791caea63109009b858cde7ec179166640f009bf58caf33a8502345360efb71208a330572d7f870c468810bb9ab54db3e2af187a0d2baba7e12c6ff96 +AUX eugene-4.1d-clang16.patch 638 BLAKE2B 31ba74851ef79712e2583775c1cefc80035d4dc02b1f81992b3f341f53d7e0685ac550c8f26200734bb1492b600e4a1cd76ed7737688d3a161f2524ab316233c SHA512 0e94106908d97d568aae6575ad7e49408ed46b489cd5ed29eb1a646f6af8f450d9d7b79355b7335b0db97783bc26059fdbf6fb690ef37214ff6ce5590a86c728 AUX eugene-4.1d-fix-c++14.patch 635 BLAKE2B d6e72bd7e4b80f21ebbc78cfc5f791fa23b0c22cd3414a5ecaaf50c54e1789625901bd0f9a5357f523de5dbca02d75229557d8a032f2e7cdd345e7dae3dbe19d SHA512 8ff6a8a2ee4b70b14d0fa9984c057307fe5b7d22e8a26969d82fb1ab7ee30a90cb3520ea8d3e16a59f09dfc46a3310cb43c621fabb31a39216209a4c3523e718 AUX eugene-4.1d-portable-getopt.patch 1433 BLAKE2B 8de256a490936a6c893c055917919a7cfc6a510675b4c12021d7cedb8a6cdf4aa73fb60d6ae4186b1df7abb784da09a9dc440464d8cbd90ac5d9ea758262391e SHA512 6a365eed393a27c080ec6f0eaa288a88e7909daa657637cb819aeb3e908934f8f228bd1026205402bc180e54c4ffe56be5ff5eedc95d3817b65da08774c9496c DIST eugene-4.1d.tar.gz 7473965 BLAKE2B 537ba871b701a5c199791809f76ea883ff77fe768e27a69b95186ef82ab32cab9b5761405a9fadfeea9f58fe88cadce83bba4b1fa6cba5f4ede2347a516d1df0 SHA512 dab37930e211b3783954f6e4a762450760201b77e0b4214f16724516d9be583d0a7ec44a2f510e73f4370e9c2dc67a425456a057fdba8f51cb72386e16a26ef5 -EBUILD eugene-4.1d-r1.ebuild 950 BLAKE2B 33eeae7972f006763a905f06542482714564d8b46d05485886f9441520a3ec9e39620a583ec66d097bc2a26b62ccf953fcc2699075426b8b855541c0af26fd48 SHA512 95ef458f3af2b1ab478d239ebb83cf64105c3b9128e06e72642d0e559ef405beb7e6b2b494320a7a866a108498715408ee693111a0b3ebd5e02297c156811cd0 +EBUILD eugene-4.1d-r1.ebuild 990 BLAKE2B 3c00ecefa82adfd64bc57cc9f8ad89e09cb29a2bec5a4552b64bd7477173f56a4bdca24f2dc2001385bf45800f4c865ea7095f8b7e181c528fa4dbee26e11e40 SHA512 a6ba26dd315a52f65a2e7a501ad515caa6fa499ef560d4c5b2b94586a146c6b84852fdbe8f6fc662088b2a72597a9b45e7a7a20cbeca0ccc742033d25f181e7d MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/eugene/eugene-4.1d-r1.ebuild b/sci-biology/eugene/eugene-4.1d-r1.ebuild index b1d9f409c096..40fb83ffc058 100644 --- a/sci-biology/eugene/eugene-4.1d-r1.ebuild +++ b/sci-biology/eugene/eugene-4.1d-r1.ebuild @@ -27,6 +27,7 @@ PATCHES=( "${FILESDIR}"/${PN}-4.1d-fix-c++14.patch "${FILESDIR}"/${PN}-4.1d-Wformat.patch "${FILESDIR}"/${PN}-4.1d-portable-getopt.patch + "${FILESDIR}"/${PN}-4.1d-clang16.patch ) src_prepare() { diff --git a/sci-biology/eugene/files/eugene-4.1d-clang16.patch b/sci-biology/eugene/files/eugene-4.1d-clang16.patch new file mode 100644 index 000000000000..21a3ec0a8b62 --- /dev/null +++ b/sci-biology/eugene/files/eugene-4.1d-clang16.patch @@ -0,0 +1,22 @@ +--- a/src/GDIF/gdIF.c ++++ b/src/GDIF/gdIF.c +@@ -228,7 +228,7 @@ + ToY(phase, pos), (unsigned char *)st, Col[col]); + } + +-void ClosePNG() ++void ClosePNG(void) + { + int i; + +--- a/src/SensorPlugins/0_SensorTk/markov.cc ++++ b/src/SensorPlugins/0_SensorTk/markov.cc +@@ -790,7 +790,7 @@ + // cumule les valeurs des cases des codons synonymes et renvoie le total. + template<class CHAINE, typename T> T TabChaine<CHAINE,T> :: cumuleVAL (int indice) const + { +- char* codegenetique=CODEGENETIQUE; ++ const char* codegenetique=CODEGENETIQUE; + T cumul=0; + for (int i=0 ; i<64 ; i++) { + if ( codegenetique[i] == codegenetique[indice] ) |