gentoo resync : 01.01.2018

3 files changed, 0 insertions, 86 deletions

diff --git a/sci-biology/fasta/Manifest b/sci-biology/fasta/Manifest
index e674eb25c94b..90848bfe1f68 100644
--- a/sci-biology/fasta/Manifest
+++ b/sci-biology/fasta/Manifest
@@ -1,7 +1,4 @@
-AUX 35.4.10-ldflags.patch 1036 BLAKE2B 5e614e62a99f4ba5808ad33a082c4eb1fb4feb1b7031f69e42a833fdff05c91cf1197a8a838eb347f2c31c59c68536fbae9dad07293d3bd80bdde8f6263a90a5 SHA512 8136536c7f9887920a045dbcd04fa9d01dc0a3b22ed0a1771df715e288d6c889d87b0a6d0f52c947b54185f6a5e92fe902316b502074200a13820cac9dfa6594
 AUX fasta-36.3.5e-ldflags.patch 2781 BLAKE2B e6d4e0984b4dadfc9d38504ab215d769084edc6c79cfe641b6b3fba8264a40add1665027295ec4afa19d26277036bfe1a5103ecdf72ef91a1139542ac8272954 SHA512 5424bb8385def72ff75701c2da153f697520cbec82f36cbed8de0e98f93d399de660e79da7700ab0ff688fd5388cf9f42a30ccc4359335ae02042bf8cbb3aae7
-DIST fasta-35.4.10.tar.gz 618971 BLAKE2B cbc413c13f7d5151add9886eb0fbe1d55d9b1847f406ff8fe614e729c6c3ab155711b6c38a2085eabd3f27506562a98ca8d9f1409525f27fe091b30f3a1e840d SHA512 f04268f0eea59cd40985c86597ab68bef40ee28e6ca914a7182c0edfe943ec8fb2a860558f422f210a4c03f3c34f36c677bd3971bc240cb87695826c755f5a47
 DIST fasta-36.3.5e.tar.gz 943763 BLAKE2B 6234d0aee76af6614e6d25ebcfbdfae080db5bc5adf611aeb6edc53ed7c6cb6cef257bf852ed39bc286527cec4175c251765ce23ea5ff39d12ff8947dba97ac6 SHA512 ddfcae36dadd7e2ed5c8c8c0bda2eed077e9f6cd55e4ebf507690671af156358e9da4e7cb1406d2b8713c326c54a9d829fc25e668b16dfa6df48d18e3a009812
-EBUILD fasta-35.4.10.ebuild 1352 BLAKE2B df91cc22840301e1c0182ce7deb116ddeb468074050e9ce84f1e80ac1456de323aedc54d671616fa789eba71da321be86c58fa8007e0a205a0c6d8f83c17eb35 SHA512 eba62f3358ef8553e61be08759202b941df00d7862901899cafe5fe4d76d1dcd8dcb25d0410720393db8263e3b9bfd5d9c627ca09b726c1a66b14a4200fc60fa
 EBUILD fasta-36.3.5e.ebuild 1625 BLAKE2B 20dd1cc003b8ae7a1cabbbcfa06f6968d6486f86751d08d791dca74e4365358f456f88a398b98e65a4bfa85d7220c6e64e91998d57c2b0c4d422c7d3533cb20d SHA512 618aa434a8271332dc1042c731d6f19d99f08eb90cc156af3b855d8df9664d5efa62a40a043c031205a03e768cf8251d246e4e7b14d7ca14deb47678399e5797
 MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/fasta/fasta-35.4.10.ebuild b/sci-biology/fasta/fasta-35.4.10.ebuild
deleted file mode 100644
index 8cad4d2a8b08..000000000000
--- a/sci-biology/fasta/fasta-35.4.10.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="2"
-
-inherit eutils flag-o-matic toolchain-funcs
-
-DESCRIPTION="FASTA is a DNA and Protein sequence alignment software package"
-HOMEPAGE="http://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml"
-SRC_URI="http://faculty.virginia.edu/wrpearson/${PN}/${PN}3/${P}.tar.gz"
-
-LICENSE="fasta"
-SLOT="0"
-KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
-IUSE="debug cpu_flags_x86_sse2 test"
-
-DEPEND="test? ( app-shells/tcsh )"
-RDEPEND=""
-
-src_prepare() {
-	CC_ALT=
-	CFLAGS_ALT=
-	ALT=
-
-	use debug && append-flags -DDEBUG
-
-	if [[ $(tc-getCC) == *icc* ]]; then
-		CC_ALT=icc
-		ALT="${ALT}_icc"
-	else
-		CC_ALT=$(tc-getCC)
-		use x86 && ALT="32"
-		use amd64 && ALT="64"
-	fi
-
-	if use cpu_flags_x86_sse2 ; then
-		ALT="${ALT}_sse2"
-		append-flags -msse2
-		[[ $(tc-getCC) == *icc* ]] || append-flags -ffast-math
-	fi
-
-	export CC_ALT="${CC_ALT}"
-	export ALT="${ALT}"
-
-	epatch "${FILESDIR}"/${PV}-ldflags.patch
-}
-
-src_compile() {
-	cd src
-	emake -f ../make/Makefile.linux${ALT} CC="${CC_ALT} ${CFLAGS}" HFLAGS="${LDFLAGS} -o" all || die
-}
-
-src_install() {
-	dobin bin/* || die
-	doman doc/{prss3.1,fasta35.1,pvcomp.1,fasts3.1,fastf3.1,ps_lav.1,map_db.1} || die
-	dodoc  FASTA_LIST README doc/{README.versions,readme*,fasta*,changes*} || die
-}
diff --git a/sci-biology/fasta/files/35.4.10-ldflags.patch b/sci-biology/fasta/files/35.4.10-ldflags.patch
deleted file mode 100644
index c3b7a9b56904..000000000000
--- a/sci-biology/fasta/files/35.4.10-ldflags.patch
+++ /dev/null
@@ -1,26 +0,0 @@
-diff --git a/make/Makefile.pcom b/make/Makefile.pcom
-index a808667..405be95 100644
---- a/make/Makefile.pcom
-+++ b/make/Makefile.pcom
-@@ -274,16 +274,16 @@ print_pssm : print_pssm.c getseq.c karlin.c apam.c
- 	$(CC) -o print_pssm $(CFLAGS) print_pssm.c getseq.c karlin.c apam.c $(LIB_M)
- 
- map_db : map_db.c uascii.h ncbl2_head.h
--	$(CC) $(CFLAGS) -o $(BIN)/map_db map_db.c
-+	$(CC) $(CFLAGS) $(HFLAGS) $(BIN)/map_db map_db.c
- 
- list_db : list_db.c
--	$(CC) $(CFLAGS) -o $(BIN)/list_db list_db.c
-+	$(CC) $(CFLAGS) $(HFLAGS) $(BIN)/list_db list_db.c
- 
- lav2ps : lav2plt.o lavplt_ps.o
--	$(CC) -DUNIX -o $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/lav2ps lav2plt.o lavplt_ps.o -lm
- 
- lav2svg : lav2plt.o lavplt_svg.o
--	$(CC) -DUNIX -o $(BIN)/lav2svg  lav2plt.o lavplt_svg.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/lav2svg  lav2plt.o lavplt_svg.o -lm
- 
- res_stats : res_stats.o scale_se.o
--	$(CC) -DUNIX -o $(BIN)/res_stats res_stats.o scale_se.o -lm
-+	$(CC) -DUNIX $(HFLAGS) $(BIN)/res_stats res_stats.o scale_se.o -lm