diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2020-01-15 15:51:32 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2020-01-15 15:51:32 +0000 |
| commit | 21435953e16cda318a82334ddbadb3b5c36d9ea7 (patch) | |
| tree | e1810a4b135afce04b34862ef0fab2bfaeb8aeca /sci-biology/gatk | |
| parent | 7bc9c63c9da678a7e6fceb095d56c634afd22c56 (diff) | |
gentoo resync : 15.01.2020
Diffstat (limited to 'sci-biology/gatk')
| -rw-r--r-- | sci-biology/gatk/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/gatk/gatk-9999.ebuild | 40 |
2 files changed, 0 insertions, 41 deletions
diff --git a/sci-biology/gatk/Manifest b/sci-biology/gatk/Manifest index 42b57038dfc3..b616ea3de733 100644 --- a/sci-biology/gatk/Manifest +++ b/sci-biology/gatk/Manifest @@ -1,4 +1,3 @@ DIST gatk-2.4.tar.gz 9106774 BLAKE2B a9ac1602091a2f0902c2841942f8dd739562ef6ebbd35894fa445e6a28d748f3c645936914acbdafc8fa59330149ee5ef0738657d8e78d5cf4af5bd26e37ab6b SHA512 9050fc2024d0b3c9a6b5617787831c0496276bcd7318a872f6c1128c31fc31c6f59429a1b189e5c2cc740909b42d846b5e041f8626b03af3a80442294db34ace EBUILD gatk-2.4.ebuild 914 BLAKE2B a289d4f4ed48d1b522ae6928dd0535991a18f9d3396d15856bf231923fb8b596e95e662d7a719195563f6caed0c014c96a800dd4f3cebf88a18122cd9d67e6f6 SHA512 a1a6fc27407bbc13247e866ed2dbc34428009091bf85e73776b5a47a95f8daca976060ecf092c4a68fee8afc1068f10aebc743e879b837b8ce0cf8ee461f6b6d -EBUILD gatk-9999.ebuild 899 BLAKE2B aaafb718d986716b9e9e27175da83869bcad23c0443c258d3109d82b2c171e658c481347c1362c52f97713da959e8eeb36b6ccd6316e1bbff7fd102810c40db5 SHA512 1bffd684f48d50a84d4c0c55f6ed8ac10bfe7ca93d35ec32d282922ad8f1bdcee5aee284c4202cb547b9a332c3aaf32b4ebf5f4488b83856a9ac11f67f8b36a2 MISC metadata.xml 349 BLAKE2B 277c979d19162d54c5a762e24fcc90d6fc043e5ddd315824b1ccc2376354db4169690933e9d9ebedaf8589636066bf5b32a646ca28892615e8626d7a8d3c43ac SHA512 1605fb041826c7197edcd3658343ed3ac50aea7dfa53262700b9f9e1a45ee81df501e55bf1e8417201f0f2709b6b6e29bb6e5036b7c187846b4dec5e89903f54 diff --git a/sci-biology/gatk/gatk-9999.ebuild b/sci-biology/gatk/gatk-9999.ebuild deleted file mode 100644 index fee2670ad219..000000000000 --- a/sci-biology/gatk/gatk-9999.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -EANT_BUILD_TARGET="dist" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" - -inherit git-2 java-pkg-2 java-ant-2 - -DESCRIPTION="The Genome Analysis Toolkit" -HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" -SRC_URI="" -EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" - -LICENSE="MIT" -SLOT="0" -IUSE="" -KEYWORDS="" - -COMMON_DEPS="" -DEPEND=" - >=virtual/jdk-1.6 - dev-vcs/git - ${COMMON_DEPS}" -RDEPEND=" - >=virtual/jre-1.6 - ${COMMON_DEPS}" - -src_prepare() { - sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die - java-pkg-2_src_prepare -} - -src_install() { - java-pkg_dojar dist/*.jar - java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar - java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar -} |