diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-05-07 01:33:16 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-05-07 01:33:16 +0100 |
| commit | c8fd0d84af0bfd1949542adc2cbb735b1d28f9ed (patch) | |
| tree | 3ee550255947da075650f1a551dcc278f9a1b7f8 /sci-biology/gatk | |
| parent | a978c074e4272bb901fbe4a10de0a7b2af574f17 (diff) | |
gentoo resync : 07.05.2021
Diffstat (limited to 'sci-biology/gatk')
| -rw-r--r-- | sci-biology/gatk/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/gatk/gatk-2.4.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/gatk/metadata.xml | 11 |
3 files changed, 0 insertions, 46 deletions
diff --git a/sci-biology/gatk/Manifest b/sci-biology/gatk/Manifest deleted file mode 100644 index df7ae7e85fe8..000000000000 --- a/sci-biology/gatk/Manifest +++ /dev/null @@ -1,3 +0,0 @@ -DIST gatk-2.4.tar.gz 9106774 BLAKE2B a9ac1602091a2f0902c2841942f8dd739562ef6ebbd35894fa445e6a28d748f3c645936914acbdafc8fa59330149ee5ef0738657d8e78d5cf4af5bd26e37ab6b SHA512 9050fc2024d0b3c9a6b5617787831c0496276bcd7318a872f6c1128c31fc31c6f59429a1b189e5c2cc740909b42d846b5e041f8626b03af3a80442294db34ace -EBUILD gatk-2.4.ebuild 845 BLAKE2B 49efa9285196e9028f6b25976c019d93b48013ab2a049faa8173d6c0204033c1247eb12303bd08bff8393c50b9b6aee49997546c49a37e2970b41aa529961b68 SHA512 2eacd0d6c4351071e42b87a35e5930502d85dff08c7a67dd5403690ab99d402fc9755464ce7055c5ed69752c27d0304cbd1fc3747a80e73d115e034ceccde2a9 -MISC metadata.xml 349 BLAKE2B 277c979d19162d54c5a762e24fcc90d6fc043e5ddd315824b1ccc2376354db4169690933e9d9ebedaf8589636066bf5b32a646ca28892615e8626d7a8d3c43ac SHA512 1605fb041826c7197edcd3658343ed3ac50aea7dfa53262700b9f9e1a45ee81df501e55bf1e8417201f0f2709b6b6e29bb6e5036b7c187846b4dec5e89903f54 diff --git a/sci-biology/gatk/gatk-2.4.ebuild b/sci-biology/gatk/gatk-2.4.ebuild deleted file mode 100644 index bab228e77f5f..000000000000 --- a/sci-biology/gatk/gatk-2.4.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -EANT_BUILD_TARGET="dist" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" - -inherit java-pkg-2 java-ant-2 vcs-snapshot - -DESCRIPTION="The Genome Analysis Toolkit" -HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" -SRC_URI="https://github.com/broadgsa/gatk/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=">=virtual/jre-1.6" -DEPEND="${RDEPEND}" - -src_prepare() { - java-pkg-2_src_prepare - sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die -} - -src_install() { - java-pkg_dojar dist/*.jar - java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar - java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar -} diff --git a/sci-biology/gatk/metadata.xml b/sci-biology/gatk/metadata.xml deleted file mode 100644 index 8c1bb65774cc..000000000000 --- a/sci-biology/gatk/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">broadgsa/gatk</remote-id> - </upstream> -</pkgmetadata> |