reinit the tree, so we can have metadata

5 files changed, 78 insertions, 0 deletions

diff --git a/sci-biology/iedera/Manifest b/sci-biology/iedera/Manifest
new file mode 100644
index 000000000000..56570db211dc
--- /dev/null
+++ b/sci-biology/iedera/Manifest
@@ -0,0 +1,8 @@
+AUX iedera-1.05-fix-buildsystem.patch 385 SHA256 82fb560b09df498b8484bdda7324a03b5f79745f778d7c2a7d5fb3d2992b0489 SHA512 7f20d78fce1ab3a9d30290675a6893a73e2935a8842e8ac8a3d4268a0ccd2a3f165ac0201b6bb13978621230f0042460e704f706d6b3e3ee9457d6a4b6417741 WHIRLPOOL 443e91d68c294ca0e457635b5a1ee1238f5424cbd1992cbb05e0313919f7ff8f89f87d25569f49d8238077b6139a3f2e24b069d001a52d780e1bfab4b415cddc
+DIST iedera-1.04.tar.gz 123847 SHA256 39d60b052f40476aebead981020f53e6b801293c3f13c4aea3f65a230027f39b SHA512 7dcbc078d7c7f84c12736573bf5708ef1aaeefcd52af24ed379535069cfb498c17dd166dc84504db7edc19ab628f0af43d0f2744e37b5565234820631784e126 WHIRLPOOL 2011116719764140c7a59fcda244154f014d03bcdd11cad3ea968c866959cf6551b388ea458ede20f4de0b0ab7b2bdaf021b94d8fc219e3c324a8022aed7a8e1
+DIST iedera-1.05.tar.gz 129163 SHA256 35df4aad16cfda4a029f6bdbd4ec2777020d4eb6b44a2d3ac0077fae79f5e3ff SHA512 60d35227d5479fea693e8a3c0e629aae9e21f3c7e2be7b2f10aaddcade70cc6525fa18dea1851f73d6c1aadbb5e8776dd4a146b1a81ecfe8c910729a2300066f WHIRLPOOL 39b248a4f5fd6fce0ef52a4427f081cb5f276176be9cad9243b4b1a4f942d5539b0dd7198e96c8b69245c628ca3b4132ad5013a196632eaf20b66b0513af0738
+EBUILD iedera-1.04.ebuild 433 SHA256 33936e50cf24a63d2af556db804cfed19a7b2e3cfe08874e08349da8aa1ff216 SHA512 c21467718e39ab4599dbe3ee12aa14f3a4ad012084292d0dca191083ce4de26d1e4f61a3902d71377cd76de170a1302a38d54c5354417fb3d78d9afa63163c70 WHIRLPOOL 08ccfc4e1f119d4598e05f1a9041d8ef38f21e0819f4325711507363ea1b8f19418bbaf2f440f9271f86b2fa38d5a197ad1f53ecbda0cc873521957df394b741
+EBUILD iedera-1.05-r1.ebuild 490 SHA256 92a512dbe09869046e390526532f7b606e9a75053d163203b07396492db3ff75 SHA512 2d30e9a6a88e085fc1acad0d5b56eb3bf590f26208b56dc195dec84bf7c946cc5d9ae0d36c147b43b812f16c71ddccdb11db28e2c1263ee46be6dd5659ef8754 WHIRLPOOL 44d3914ddd850195b8831378bbdf7683e3c9a5ca0c1e2ff31eb1a76e521b1eaa683e1204db88a29479ac1aa2b55438ed93c533f5afe46f541bc21c1e8b03030d
+MISC ChangeLog 2900 SHA256 850c409dfe865ab8c2a568e974b9f7546c7a853b3f37151f2ffa19028853f777 SHA512 7f4768d4b4a7375f0b2dfc5ac760346a9c0c77ee12c7d0a1be4e6983ecd3a2a5cbdc96054fd689c4ba6c2068aacae99d2815842faf89f7303384f4ec3f408815 WHIRLPOOL 3e52270007bd954185f345e6493abadee3b3f1a263482c386ea8a12c0872d58f50dd656d42fa56c241a5ef46ae329eb77125829c2bfe289f15a35996386ed128
+MISC ChangeLog-2015 500 SHA256 007f5acb86071e6c89a78219a805f31e9ca87c833158e7ca58fe681ce15ee21a SHA512 2cf1330e0cc7e53acb2755cec56130d1386138aff00ecd68a8d11d5d0c484273ea8916fb7202ecf993b93ce7479888ced5a4800741119885e3c2c522e66faad8 WHIRLPOOL fda49a802218ea518f5ae8d22e3e26018b92d15a437521d096199986957c7ebc4e5cb765a54c91ed9839965e115d1ef8dc871a891269e992acefe37cd8a513a2
+MISC metadata.xml 267 SHA256 b3535fccca0fc8511c1245214c1a7c105447b35f21093bda132991874ce82d48 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 WHIRLPOOL d841a2f928c50434f2e8c65f583ea3aa2d04e5cebd664b1531ab5373260f735219131991000bbb2b21aa3add05dcdce29548b78eac8d8c0eced6dc5505b64e13
diff --git a/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
new file mode 100644
index 000000000000..f232d7de162b
--- /dev/null
+++ b/sci-biology/iedera/files/iedera-1.05-fix-buildsystem.patch
@@ -0,0 +1,16 @@
+iedera sets default flags that override user {C,CXX,LD}FLAGS
+
+--- iedera-1.05/configure.ac
++++ iedera-1.05/configure.ac
+@@ -4,11 +4,5 @@
+ AC_PROG_INSTALL
+ AC_PROG_CXX
+ AC_HEADER_STDC
+-CFLAGS="$CFLAGS $UNAME_DEFS -O3 -pipe -funroll-loops -Wall"
+-CXXFLAGS="$CFLAGS"
+-LDFLAGS="$LDFLAGS -lm"
+-AC_SUBST(CFLAGS)
+-AC_SUBST(CXXFLAGS)
+-AC_SUBST(LDFLAGS)
+ AC_CONFIG_FILES([Makefile])
+ AC_OUTPUT
diff --git a/sci-biology/iedera/iedera-1.04.ebuild b/sci-biology/iedera/iedera-1.04.ebuild
new file mode 100644
index 000000000000..6be6fa802c94
--- /dev/null
+++ b/sci-biology/iedera/iedera-1.04.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI="2"
+
+DESCRIPTION="A subset seed design tool for DNA sequence alignment"
+HOMEPAGE="http://bioinfo.lifl.fr/yass/iedera.php"
+SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND=""
+
+src_install() {
+	einstall || die
+	dodoc AUTHORS README NEWS
+}
diff --git a/sci-biology/iedera/iedera-1.05-r1.ebuild b/sci-biology/iedera/iedera-1.05-r1.ebuild
new file mode 100644
index 000000000000..115b5495f617
--- /dev/null
+++ b/sci-biology/iedera/iedera-1.05-r1.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit autotools
+
+DESCRIPTION="A subset seed design tool for DNA sequence alignment"
+HOMEPAGE="http://bioinfo.lifl.fr/yass/iedera.php"
+SRC_URI="http://bioinfo.lifl.fr/yass/files/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+PATCHES=(
+	"${FILESDIR}/${P}-fix-buildsystem.patch"
+)
+
+src_prepare() {
+	mv configure.{in,ac} || die
+	default
+	eautoreconf
+}
diff --git a/sci-biology/iedera/metadata.xml b/sci-biology/iedera/metadata.xml
new file mode 100644
index 000000000000..959160fe46b1
--- /dev/null
+++ b/sci-biology/iedera/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-biology@gentoo.org</email>
+    <name>Gentoo Biology Project</name>
+  </maintainer>
+</pkgmetadata>