diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-04-28 20:21:43 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-04-28 20:21:43 +0100 |
| commit | 40aaaa64e86ba6710bbeb31c4615a6ce80e75e11 (patch) | |
| tree | 758c221bad35c9288d0bd6df9c7dfc226728e52c /sci-biology/mothur | |
| parent | 8d5dbd847cbc704a6a06405856e94b461011afe3 (diff) | |
gentoo resync : 28.04.2021
Diffstat (limited to 'sci-biology/mothur')
| -rw-r--r-- | sci-biology/mothur/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/mothur/mothur-1.27.0-r1.ebuild | 35 |
2 files changed, 18 insertions, 19 deletions
diff --git a/sci-biology/mothur/Manifest b/sci-biology/mothur/Manifest index a28de67ee118..e673f0859e3c 100644 --- a/sci-biology/mothur/Manifest +++ b/sci-biology/mothur/Manifest @@ -1,5 +1,5 @@ AUX mothur-1.27.0-makefile.patch 1196 BLAKE2B dbe053a5f5629eadae57bd09545ef46106741204050d0c888532388fe0b7f8f2fe4d5f311163e95812d0d828aae2228a2f72b7f0c861f5a3d42a41e17b6ba4f3 SHA512 8a78ddbc926d4e116deed440fda8431ccbca3299ac182fc84850259187dc130cc43fb6f23845d055d998293fa43f94cbe35930242c5f6aa049f8275ad3e42adf AUX mothur-1.27.0-overflows.patch 4894 BLAKE2B a9de0276a9ccbb5e86d6cf208f86414ea8c0befdf80807e05b40bee0c6f685cb40a608005e69eb3f77b85990424a36cde14971044cb6a1136a50d85078eb9f1f SHA512 aa392b2060cecc38006a7ac50aaa8e4249a020029234ac2abdc33441b12a09faabb0335144ff4d888e55a1da1838a45347981f49f6658f3546a54a30b5e2133a DIST mothur-1.27.0.zip 7095054 BLAKE2B 96a6410d36f64ff50591955aa22bfddf6217c7568022c8c7f70ab70c65d57af2217477de56b6f9ceaf11237cdc5380bd354cf6564002357546539585d0f58221 SHA512 81821ca95d4ce3f0d1e6aa920c4fe3fddd70f716157312ed0590c1c4ad728e6786bfe79f6badddcfb060ed5d1996cc1b5062c320a59209fef35f68e687ba3dd5 -EBUILD mothur-1.27.0-r1.ebuild 883 BLAKE2B dbdda281b6c7a79e4c3202add586f038011502e1c5bf7cc386a4a5c5f90b1926fb16fa3202d6266db77ef5350bad0f56722adb69f1ac7faa50a73a1ae0f5f558 SHA512 c0d22ad5dbe6290f6aed0d055f2ad57b8b25bb33fcb1166c154e604d7337a367beb23f9acc61487ed969e6698ca6f115f8c8d36dc14863a36d08e3f8dd08cf1d +EBUILD mothur-1.27.0-r1.ebuild 845 BLAKE2B 52cc28dcfd3df857f51b9c430c1ec5f658562e922f1394f0d79cba4fd6cd33161cb5639e0d7ca95c6b5daeffebe376baa5c2df0c5db6e8c6382fda40a215060d SHA512 6fa585f94e0caf8cbe40a2673d4e5eb49c6c8c9e5cbc279deef1b525d1674ce986068a08a994fecc079b5cee2301cd92fb395d884c4e23c98afe7587a49cabeb MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/mothur/mothur-1.27.0-r1.ebuild b/sci-biology/mothur/mothur-1.27.0-r1.ebuild index 9e9bf2160310..12b628475aac 100644 --- a/sci-biology/mothur/mothur-1.27.0-r1.ebuild +++ b/sci-biology/mothur/mothur-1.27.0-r1.ebuild @@ -1,43 +1,42 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit eutils flag-o-matic fortran-2 toolchain-funcs +inherit flag-o-matic fortran-2 toolchain-funcs DESCRIPTION="A suite of algorithms for ecological bioinformatics" HOMEPAGE="https://www.mothur.org/" SRC_URI="https://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip" +S="${WORKDIR}/${PN^}.source" LICENSE="GPL-3" SLOT="0" -IUSE="mpi +readline" KEYWORDS="amd64 x86" +IUSE="mpi +readline" RDEPEND=" sci-biology/uchime mpi? ( virtual/mpi )" -DEPEND="${RDEPEND} - app-arch/unzip" +DEPEND="${RDEPEND}" +BDEPEND="app-arch/unzip" -S=${WORKDIR}/Mothur.source +PATCHES=( + "${FILESDIR}"/${P}-makefile.patch + "${FILESDIR}"/${P}-overflows.patch +) -pkg_setup() { - fortran-2_pkg_setup - use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX) +src_configure() { + use mpi && export CXX=mpicxx || tc-export CXX use amd64 && append-cppflags -DBIT_VERSION } -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-makefile.patch \ - "${FILESDIR}"/${P}-overflows.patch -} - src_compile() { - emake USEMPI=$(usex mpi) USEREADLINE=$(usex readline) + emake \ + USEMPI=$(usex mpi) \ + USEREADLINE=$(usex readline) } src_install() { - dobin ${PN} + dobin mothur } |