diff options
| author | V3n3RiX <venerix@koprulu.sector> | 2022-07-09 15:43:36 +0100 |
|---|---|---|
| committer | V3n3RiX <venerix@koprulu.sector> | 2022-07-09 15:43:36 +0100 |
| commit | 2719f73b6813d11d13a9650cdd2ab8ec6e69385d (patch) | |
| tree | 8c816148bcbd22757d892089c989ae614eae4f5a /sci-biology/phred | |
| parent | 0f558761aa2dee1017b4751e4017205e015a9560 (diff) | |
gentoo resync : 09.07.2022
Diffstat (limited to 'sci-biology/phred')
| -rw-r--r-- | sci-biology/phred/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/phred/phred-071220-r2.ebuild (renamed from sci-biology/phred/phred-071220-r1.ebuild) | 24 |
2 files changed, 11 insertions, 15 deletions
diff --git a/sci-biology/phred/Manifest b/sci-biology/phred/Manifest index 161f89dffb9d..7fc9ef8e7c6a 100644 --- a/sci-biology/phred/Manifest +++ b/sci-biology/phred/Manifest @@ -1,5 +1,5 @@ AUX phred-071220-fix-build-system.patch 1981 BLAKE2B 0c9ae75ecf54eadd1d6cd3cfeed5d2f949f234b77d4f329133e2c176207410e93a35341c43636c5b2f742a2ee2d20825cf79bb65d5dac43ba28fc07f7c6bb69b SHA512 7647f6f6e9a1ae51cbf1aa3e39b337288e22fc26a95fdd88f92ce43fc6c0ef6ff59ec26919d14dfefff70be48e4a5604ddefef98bddf5d1d14d1e656665c878d AUX phred-071220-fix-qa.patch 787 BLAKE2B 79f687dc1e51dd51e9f97886e0ada9b515d7e4255dff0ec3e81dccb2103ba8b4bee691c8a5b9a321cbdde5576fe8d80dbadafdb740c2cdee81fe9748255084ab SHA512 27811a834358d0e1bf8281882e0420e0eb6bd9586871c8c72a4de79badc9539ea8e9258b9c3a3bf8ca1d3f6924d61abce2dcc0c0ed3b64e5fa53d4548109f5bc DIST phred-dist-071220.b-acd.tar.gz 357767 BLAKE2B ae1180f54eaa3631a4e32c2ffe388b35745302e3d014c8fa893119e7e488d4bb4316f7ee0588cd12db5cbbc23033f689f4a0a487cdc7fe42e8c7a67ceb3c43ae SHA512 0a6b0a733e6dcc0495eaab720b75f8e5815df494d0a773b8b8336d5208321c2ba475921084835a769367ec51aed156585ab97346a510100d4337e3215ec75276 -EBUILD phred-071220-r1.ebuild 978 BLAKE2B c2262024808c5f0fe203ff301964ae0b546de279199cdc1ed9c7ab3ee89e5d68f6285e4726bb9a28f8e22091c177918103dc06cde7501e7ce2b4ee5b78f313c6 SHA512 f66790ce585e4747c4db2eab8cb4c2be63da903510d64bb395ec74173a8b150524ed7ae1149ccd78876dfafb59bbcf2572cbff3bd5b4cab8642112b26a151482 +EBUILD phred-071220-r2.ebuild 942 BLAKE2B 0036b7fbe0891c0a153713fb7a17a12aff626a50ecd1609d6bde5e4788eca5e9d9a13aade9c43e22edcb3796ca4b9ef427e258eded270db7dec532f202986a63 SHA512 beec976e7dfdac8b7f539b680a6240b9a8489d8f35e23f831816be1df356cedf28f0c21109eb605a6e81827aa69298d0b18e3e2bea129ee9d552bb100240246f MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de diff --git a/sci-biology/phred/phred-071220-r1.ebuild b/sci-biology/phred/phred-071220-r2.ebuild index bf7a0c7338cb..9d7ff9a1f6c8 100644 --- a/sci-biology/phred/phred-071220-r1.ebuild +++ b/sci-biology/phred/phred-071220-r2.ebuild @@ -1,28 +1,23 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=8 inherit toolchain-funcs DESCRIPTION="A base caller for Sanger DNA sequencing" HOMEPAGE="http://phrap.org/phredphrapconsed.html" SRC_URI="phred-dist-071220.b-acd.tar.gz" +S="${WORKDIR}" LICENSE="phrap" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="" -RDEPEND="" - -S="${WORKDIR}" - RESTRICT="fetch" + PATCHES=( - "${FILESDIR}/${PN}-071220-fix-build-system.patch" - "${FILESDIR}/${PN}-071220-fix-qa.patch" + "${FILESDIR}"/${PN}-071220-fix-build-system.patch + "${FILESDIR}"/${PN}-071220-fix-qa.patch ) pkg_nofetch() { @@ -39,11 +34,12 @@ src_compile() { src_install() { dobin phred daev - insinto /usr/share/${PN} + insinto /usr/share/phred doins phredpar.dat - echo "PHRED_PARAMETER_FILE=${EPREFIX}/usr/share/${PN}/phredpar.dat" > 99phred || die - doenvd 99phred + newenvd - 99phred <<- EOF + PHRED_PARAMETER_FILE="${EPREFIX}/usr/share/phred/phredpar.dat" + EOF newdoc DAEV.DOC DAEV.DOC.txt newdoc PHRED.DOC PHRED.DOC.txt |