diff options
| author | V3n3RiX <venerix@redcorelinux.org> | 2021-01-22 20:28:19 +0000 |
|---|---|---|
| committer | V3n3RiX <venerix@redcorelinux.org> | 2021-01-22 20:28:19 +0000 |
| commit | abaa75b10f899ada8dd05b23cc03205064394bc6 (patch) | |
| tree | eca3dd248b73b92013cba00a0fcc1edf2696e19a /sci-biology/psipred | |
| parent | 24fd814c326e282c4321965c31f341dad77e270d (diff) | |
gentoo resync : 22.01.2021
Diffstat (limited to 'sci-biology/psipred')
| -rw-r--r-- | sci-biology/psipred/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/psipred/psipred-3.4.ebuild | 56 |
2 files changed, 0 insertions, 58 deletions
diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest index fa6d7469eacc..f55dab11c9d8 100644 --- a/sci-biology/psipred/Manifest +++ b/sci-biology/psipred/Manifest @@ -1,9 +1,7 @@ AUX 3.1-Makefile.patch 1103 BLAKE2B ba9c5a7f60d62d66d1cd5a5e9b0a68ffe5c99124d02eae1924ffe92ecb2d24d7224e5bd0b37db3cf17da4f39d3c8b6b53e04466da8976e71910b9dcea9bc59ab SHA512 6e0daf4478b5b992ed1647bf653320b18cd2582ca69ebe761654bd4bd9c9c46b7de183ae84a28582cb5543603362eb7eb6c306ff562c3ec18c292d89480fd127 AUX 3.1-path.patch 1128 BLAKE2B ea445427fe2ff574028b3d82ae353da5a1dfe3f5c7fade419287f6dc2e819471b4ec007dfee7cf71a1c958082a8dfa83acd5046208e0a7b16c07d90cdd68073f SHA512 e6201669db910f074bb13d1b781416d8d99300f328147cccd7755d5d6595b25aa45353f6da6566f225a067e94ab8ee41ea89bfd75cf2cdf2c076481707acf88c AUX 3.2-fgets.patch 427 BLAKE2B dba911ef9d28c230e38d326336fa7adfae31ffafd225d525968f58b1013df2f5812b0c678f37576714c7bfa396c7378b2e1201f8c6b2bea844c2e042eea7c0ec SHA512 a8a59a765057e20b9c606b8e4d76b5657a9a06150247b426d939805547148ddc8a1cb4282e04bcdcd756bfa6df7bebffcc77b84f62c86be2f643069d2ff913bb -DIST psipred3.4.tar.gz 1102416 BLAKE2B 9797f4181357bb26455253370aca39857c39a2c4bcd521b10a139784e6fd5dc9e14b76c11d99989ac33c3a01fb62807957f9969daa5ac9d928b0b4e83e943743 SHA512 1bc7ac41a213766139324540ba6952538f2890749ecf217d771b4ce59e25231857d38c237ea573674f11a82300750e9a3ff628ec0156864863a9528a144cd919 DIST psipred3.5.tar.gz 1101579 BLAKE2B 2fd86841cbc4bb86045b51f8283550832df8356ee88a6ef2c85281b5810debb23ac53652ddc5ffc9bd6f8e9e7248ce39ccee23400ff8fb49cd05b877d730b553 SHA512 a7b3f7d149f6a29cf0b48bdb900f6983d42af01132d8b54a7be88994d09fcf27dbe57115d41ec9654da6daf6898d5986d08fbdcefa3a4c81af0d358500cd40c2 DIST tdbdata.tar.gz 40241247 BLAKE2B c85a2fde9b29a14e1da27be1a7ea5fe1704f72b66cd79514dd50a3a0d2d8aab9341f7d5075f6d1896cefa54ca83948387b902b38780181777dc505a9a15b4aab SHA512 f96d7ffbb77e129251e27f62b7f099d944bacd14935e03fc52c9f0b262cce1ad477ad43520a93b407951fb8f5dd3ba2e27ff6b5ae8a637ec03bc02f8c7c3990c -EBUILD psipred-3.4.ebuild 1215 BLAKE2B da6e40d6c96916d638aec4343a06be76705d0b0b729ab4332613e998539044780b76b94bdde12ebb01059ba1f5763c070dea0d13f2f1d934e1c3db1aaa4d2dab SHA512 8299f0b758e7192418794fcfaae2d81cc6b4f95dc0507b75b5aeac31c60318c9bfd7d0e9a307f23f163887ebe3af986b2c654d19e27bbf7d4111e56e46a1b649 EBUILD psipred-3.5.ebuild 1215 BLAKE2B da6e40d6c96916d638aec4343a06be76705d0b0b729ab4332613e998539044780b76b94bdde12ebb01059ba1f5763c070dea0d13f2f1d934e1c3db1aaa4d2dab SHA512 8299f0b758e7192418794fcfaae2d81cc6b4f95dc0507b75b5aeac31c60318c9bfd7d0e9a307f23f163887ebe3af986b2c654d19e27bbf7d4111e56e46a1b649 MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403 diff --git a/sci-biology/psipred/psipred-3.4.ebuild b/sci-biology/psipred/psipred-3.4.ebuild deleted file mode 100644 index 1fe4c6dced52..000000000000 --- a/sci-biology/psipred/psipred-3.4.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils prefix toolchain-funcs versionator - -#MY_P="${PN}$(delete_all_version_separators)" -MY_P="${PN}${PV}" - -DESCRIPTION="Protein Secondary Structure Prediction" -HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" -SRC_URI=" - http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz - test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )" - -LICENSE="psipred" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="test" -RESTRICT="!test? ( test )" - -RDEPEND=" - app-shells/tcsh - sci-biology/ncbi-tools - sci-biology/update-blastdb" -DEPEND="" - -S="${WORKDIR}"/${PN} - -src_prepare() { - rm -f bin/* - epatch \ - "${FILESDIR}"/3.1-Makefile.patch \ - "${FILESDIR}"/3.1-path.patch \ - "${FILESDIR}"/3.2-fgets.patch - eprefixify runpsipred* - emake -C src clean -} - -src_compile() { - emake -C src CC=$(tc-getCC) -} - -src_install() { - emake -C src DESTDIR="${D}" install - dobin runpsipred* bin/* BLAST+/runpsipred* - insinto /usr/share/${PN} - doins -r data - dodoc README -} - -pkg_postinst() { - elog "Please use the update_blastdb.pl in order to" - elog "maintain your own local blastdb" -} |